Query gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 205 No_of_seqs 135 out of 5334 Neff 6.9 Searched_HMMs 33803 Date Wed Jun 1 17:58:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780570.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3lou_A Formyltetrahydrofolate 100.0 2.5E-41 1.4E-45 305.2 19.6 198 2-202 1-198 (199) 2 >1jkx_A GART;, phosphoribosylg 100.0 5.5E-41 1.4E-45 302.9 20.8 198 4-201 1-198 (212) 3 >2ywr_A Phosphoribosylglycinam 100.0 6.2E-41 1.4E-45 302.5 19.7 198 3-200 1-198 (216) 4 >3kcq_A Phosphoribosylglycinam 100.0 1.3E-40 4.2E-45 300.3 17.6 193 3-200 8-200 (215) 5 >1meo_A Phosophoribosylglycina 100.0 2.6E-40 7E-45 298.2 18.7 196 4-199 1-196 (209) 6 >3da8_A Probable 5'-phosphorib 100.0 1.3E-39 3.8E-44 293.4 18.2 198 3-202 12-209 (215) 7 >1fmt_A Methionyl-tRNA FMet fo 100.0 3.2E-37 9.5E-42 276.9 14.7 184 3-197 3-196 (204) 8 >2bw0_A 10-FTHFDH, 10-formylte 100.0 4.2E-37 1.3E-41 276.0 13.9 194 1-196 18-214 (232) 9 >1z7e_A Protein aRNA; rossmann 100.0 2.2E-36 6.4E-41 271.2 9.2 180 4-196 1-189 (207) 10 >2bln_A Protein YFBG; transfer 100.0 2.2E-36 6.4E-41 271.2 8.2 180 4-196 1-189 (207) 11 >1zgh_A Methionyl-tRNA formylt 100.0 5.5E-33 1.6E-37 247.7 6.4 178 4-197 8-185 (201) 12 >1f0k_A MURG, UDP-N-acetylgluc 94.9 0.11 3.3E-06 31.8 6.7 110 3-116 6-132 (196) 13 >3e9m_A Oxidoreductase, GFO/ID 94.1 0.16 4.8E-06 30.7 6.0 72 1-89 3-74 (181) 14 >3evn_A Oxidoreductase, GFO/ID 92.3 0.24 7.2E-06 29.4 4.7 73 1-90 3-75 (181) 15 >3db2_A Putative NADPH-depende 92.1 0.59 1.7E-05 26.8 6.5 72 1-90 3-74 (183) 16 >2o4u_X Dimeric dihydrodiol de 92.0 0.75 2.2E-05 26.1 7.0 72 2-89 1-73 (184) 17 >2pn1_A Carbamoylphosphate syn 91.8 0.26 7.8E-06 29.2 4.4 75 3-88 4-78 (104) 18 >3dzc_A UDP-N-acetylglucosamin 91.6 0.95 2.8E-05 25.4 7.1 115 1-117 23-148 (211) 19 >1q0q_A 1-deoxy-D-xylulose 5-p 91.0 0.57 1.7E-05 26.9 5.5 57 2-61 8-66 (133) 20 >3ezy_A Dehydrogenase; structu 90.1 1.2 3.5E-05 24.8 6.4 71 2-89 1-71 (173) 21 >3beo_A UDP-N-acetylglucosamin 89.9 1.6 4.6E-05 23.9 7.1 117 2-119 7-134 (211) 22 >3ec7_A Putative dehydrogenase 89.2 1.7 5.2E-05 23.5 7.9 72 3-89 23-94 (149) 23 >3euw_A MYO-inositol dehydroge 89.2 0.96 2.8E-05 25.3 5.4 84 2-103 3-86 (125) 24 >2fb9_A D-alanine:D-alanine li 89.2 0.88 2.6E-05 25.6 5.2 38 1-43 1-45 (88) 25 >1v4v_A UDP-N-acetylglucosamin 88.4 2 5.9E-05 23.2 6.9 160 2-168 4-183 (204) 26 >2i87_A D-alanine-D-alanine li 88.3 0.64 1.9E-05 26.6 4.0 42 1-44 1-49 (99) 27 >3grf_A Ornithine carbamoyltra 88.1 0.59 1.8E-05 26.8 3.8 101 3-121 4-132 (135) 28 >1e4e_A Vancomycin/teicoplanin 88.0 0.85 2.5E-05 25.7 4.5 40 1-42 1-47 (119) 29 >1ehi_A LMDDL2, D-alanine:D-la 87.5 1.1 3.2E-05 25.0 4.8 42 1-43 1-49 (153) 30 >3i12_A D-alanine-D-alanine li 86.5 1.2 3.7E-05 24.6 4.6 40 1-42 1-47 (110) 31 >3e18_A Oxidoreductase; dehydr 86.4 1.5 4.5E-05 24.0 5.0 74 1-93 3-76 (125) 32 >1mio_B Nitrogenase molybdenum 86.1 2.2 6.6E-05 22.8 5.8 82 3-95 3-89 (109) 33 >1xea_A Oxidoreductase, GFO/ID 85.8 2.7 8E-05 22.2 6.9 69 2-89 1-70 (184) 34 >2d13_A Hypothetical protein P 85.4 2.9 8.5E-05 22.1 7.7 81 1-88 2-96 (124) 35 >2vt3_A REX, redox-sensing tra 84.4 0.86 2.6E-05 25.7 3.0 81 5-90 2-92 (130) 36 >3bl5_A Queuosine biosynthesis 84.4 3.2 9.4E-05 21.8 8.3 58 1-63 1-66 (219) 37 >1ydw_A AX110P-like protein; s 84.3 3.2 9.4E-05 21.8 6.3 74 2-89 5-78 (191) 38 >2glx_A 1,5-anhydro-D-fructose 83.9 2.7 8E-05 22.2 5.4 71 4-91 1-71 (122) 39 >2i6u_A Otcase, ornithine carb 83.8 3.3 9.8E-05 21.6 7.0 101 3-121 3-126 (129) 40 >1pfk_A Phosphofructokinase; t 83.1 2.9 8.4E-05 22.1 5.2 106 2-113 1-126 (185) 41 >1nvm_B Acetaldehyde dehydroge 82.7 3.7 0.00011 21.3 7.2 77 1-89 1-78 (158) 42 >1kjq_A GART 2, phosphoribosyl 82.6 2.7 8E-05 22.2 4.9 92 4-113 12-103 (125) 43 >1zh8_A Oxidoreductase; TM0312 81.3 4.1 0.00012 21.0 7.2 75 1-91 16-91 (143) 44 >1jl3_A Arsenate reductase; al 81.0 2 6E-05 23.1 3.8 79 1-90 1-82 (139) 45 >3cea_A MYO-inositol 2-dehydro 80.6 4.3 0.00013 20.8 7.4 72 3-90 8-79 (132) 46 >3e5n_A D-alanine-D-alanine li 80.2 3 8.8E-05 22.0 4.5 40 1-42 20-66 (130) 47 >1js1_X Transcarbamylase; alph 79.1 2 6.1E-05 23.1 3.3 25 94-121 93-117 (120) 48 >2axq_A Saccharopine dehydroge 78.3 5.1 0.00015 20.4 5.8 75 1-89 21-95 (196) 49 >1f06_A MESO-diaminopimelate D 78.1 5.2 0.00015 20.3 6.6 38 1-41 1-38 (154) 50 >2oho_A Glutamate racemase; is 77.9 3 8.8E-05 22.0 3.9 99 2-119 11-113 (142) 51 >3hdj_A Probable ornithine cyc 77.7 5.3 0.00016 20.2 6.1 86 3-104 3-89 (170) 52 >1r0k_A 1-deoxy-D-xylulose 5-p 76.7 5.6 0.00017 20.0 7.1 59 1-60 1-60 (150) 53 >1g63_A Epidermin modifying en 76.1 4.5 0.00013 20.7 4.4 37 2-40 1-39 (181) 54 >1zuw_A Glutamate racemase 1; 75.7 4.7 0.00014 20.6 4.4 70 1-89 1-73 (160) 55 >2dwc_A PH0318, 433AA long hyp 74.7 6.3 0.00019 19.7 5.9 83 3-103 19-101 (108) 56 >2ef0_A Ornithine carbamoyltra 74.5 3.2 9.5E-05 21.7 3.3 26 94-121 91-116 (119) 57 >2nvw_A Galactose/lactose meta 73.6 6.7 0.0002 19.5 6.5 76 3-90 39-116 (260) 58 >1qgu_B Protein (nitrogenase m 73.2 6.8 0.0002 19.5 6.4 85 3-98 81-171 (240) 59 >3hno_A Pyrophosphate-dependen 72.9 6.9 0.00021 19.4 4.9 85 1-90 1-112 (211) 60 >2ho3_A Oxidoreductase, GFO/ID 72.7 7 0.00021 19.4 4.9 69 4-90 2-70 (123) 61 >1tlt_A Putative oxidoreductas 72.2 7.2 0.00021 19.3 6.0 53 1-57 3-56 (184) 62 >3btv_A Galactose/lactose meta 72.1 7.2 0.00021 19.3 5.6 76 2-89 19-96 (234) 63 >1mio_A Nitrogenase molybdenum 72.1 2.1 6.3E-05 23.0 1.9 81 4-95 97-177 (294) 64 >2p2s_A Putative oxidoreductas 71.9 7.3 0.00022 19.3 6.3 71 3-90 4-74 (127) 65 >3i23_A Oxidoreductase, GFO/ID 70.7 7.7 0.00023 19.1 7.4 71 3-91 2-74 (125) 66 >2q8n_A Glucose-6-phosphate is 70.5 5.8 0.00017 20.0 3.9 13 106-118 142-154 (170) 67 >2dt5_A AT-rich DNA-binding pr 70.5 2.2 6.6E-05 22.8 1.7 68 3-89 3-70 (111) 68 >1vb5_A Translation initiation 69.5 8.2 0.00024 18.9 9.2 58 3-62 108-169 (276) 69 >2c5s_A THII, probable thiamin 69.1 8.4 0.00025 18.9 5.0 56 3-62 5-68 (231) 70 >2czc_A Glyceraldehyde-3-phosp 69.0 8.4 0.00025 18.8 7.4 54 2-59 1-54 (174) 71 >2ph5_A Homospermidine synthas 68.5 2.3 6.9E-05 22.7 1.5 150 2-168 12-175 (214) 72 >1pvv_A Otcase, ornithine carb 67.9 8.3 0.00025 18.9 4.2 99 3-121 3-125 (128) 73 >2jfq_A Glutamate racemase; ce 67.8 8.9 0.00026 18.7 5.2 70 1-89 20-91 (174) 74 >1jf8_A Arsenate reductase; pt 66.5 7.4 0.00022 19.2 3.7 57 1-57 1-60 (131) 75 >2ixa_A Alpha-N-acetylgalactos 66.4 9.5 0.00028 18.5 7.4 80 1-90 18-99 (231) 76 >2yrx_A Phosphoribosylglycinam 66.3 7.7 0.00023 19.1 3.8 82 2-101 20-101 (379) 77 >3gd5_A Otcase, ornithine carb 66.2 9.5 0.00028 18.5 7.2 99 3-121 3-125 (128) 78 >1ebf_A Homoserine dehydrogena 66.0 7.4 0.00022 19.2 3.6 128 1-143 2-144 (166) 79 >3kd9_A Coenzyme A disulfide r 65.8 9.7 0.00029 18.4 4.3 36 1-41 1-38 (183) 80 >1vlv_A Otcase, ornithine carb 65.5 9.8 0.00029 18.4 5.4 101 3-121 3-127 (130) 81 >1p3y_1 MRSD protein; flavopro 65.1 9.4 0.00028 18.5 4.0 36 2-39 7-44 (194) 82 >3ego_A Probable 2-dehydropant 64.6 2.9 8.5E-05 22.1 1.3 31 2-38 1-32 (172) 83 >2z2v_A Hypothetical protein P 64.6 1.1 3.4E-05 24.8 -0.8 36 2-40 15-50 (365) 84 >1tvc_A Methane monooxygenase 63.8 11 0.00031 18.2 5.1 41 2-42 3-44 (137) 85 >2qcu_A Aerobic glycerol-3-pho 62.5 9.1 0.00027 18.6 3.6 51 1-58 1-61 (171) 86 >2pvp_A D-alanine-D-alanine li 62.5 11 0.00033 18.0 5.3 36 1-40 18-60 (139) 87 >1q15_A CARA; CMPR, (2S,5S)-5- 62.3 11 0.00033 18.0 5.4 56 3-63 2-63 (223) 88 >1zzg_A Glucose-6-phosphate is 62.1 11 0.00033 18.0 3.9 15 105-119 133-147 (162) 89 >2vxo_A GMP synthase [glutamin 61.3 12 0.00034 17.9 7.0 57 3-62 23-87 (229) 90 >1iow_A DD-ligase, DDLB, D-ALA 61.0 12 0.00035 17.8 4.9 33 2-36 1-40 (100) 91 >1e9y_B Urease beta subunit; h 60.9 12 0.00035 17.8 4.9 89 3-99 59-169 (379) 92 >1duv_G Octase-1, ornithine tr 60.7 12 0.00035 17.8 3.9 99 3-119 3-126 (126) 93 >2jjm_A Glycosyl transferase, 60.0 3.1 9.3E-05 21.8 0.8 132 2-135 14-161 (216) 94 >1m1n_A Nitrogenase molybdenum 59.6 12 0.00037 17.7 5.8 104 4-122 105-213 (248) 95 >3iwa_A FAD-dependent pyridine 59.3 13 0.00037 17.6 4.1 36 1-41 1-38 (209) 96 >3k32_A Uncharacterized protei 58.8 13 0.00038 17.6 7.0 56 3-63 6-67 (203) 97 >2dpl_A GMP synthetase, GMP sy 58.2 13 0.00039 17.5 4.7 56 3-62 20-84 (189) 98 >3fiu_A NH(3)-dependent NAD(+) 58.2 13 0.00039 17.5 6.5 57 2-63 28-92 (249) 99 >2q3e_A UDP-glucose 6-dehydrog 58.1 13 0.00039 17.5 4.3 51 1-57 2-54 (213) 100 >1geg_A Acetoin reductase; SDR 57.7 13 0.00039 17.5 5.2 87 1-93 1-91 (256) 101 >2pfs_A USP, universal stress 57.6 13 0.0004 17.5 3.9 89 1-93 4-120 (150) 102 >2hk9_A Shikimate dehydrogenas 57.4 13 0.0004 17.4 4.3 48 1-54 1-48 (115) 103 >2owr_A UDG, uracil-DNA glycos 57.3 2.6 7.6E-05 22.4 0.0 50 68-121 91-142 (171) 104 >2vsy_A XCC0866; transferase, 57.0 14 0.0004 17.4 6.4 114 3-142 7-129 (191) 105 >1pea_A Amidase operon; gene r 56.6 14 0.00041 17.3 5.9 74 18-93 3-82 (179) 106 >3gdo_A Uncharacterized oxidor 56.0 14 0.00042 17.3 6.0 70 2-90 4-73 (126) 107 >3ff1_A Glucose-6-phosphate is 55.6 13 0.00039 17.5 3.4 114 5-119 29-158 (173) 108 >1efv_A Electron transfer flav 54.7 13 0.00039 17.5 3.3 80 44-123 32-113 (132) 109 >2w37_A Ornithine carbamoyltra 54.1 15 0.00045 17.1 5.7 104 3-124 3-131 (159) 110 >3c7a_A Octopine dehydrogenase 53.4 16 0.00046 17.0 4.2 31 2-36 1-32 (204) 111 >2yv1_A Succinyl-COA ligase [A 53.2 12 0.00034 17.9 2.8 65 3-90 13-78 (128) 112 >1bg6_A N-(1-D-carboxylethyl)- 53.2 16 0.00046 17.0 5.0 31 1-36 1-33 (195) 113 >1xng_A NH(3)-dependent NAD(+) 53.1 16 0.00046 17.0 6.1 58 2-63 24-89 (132) 114 >2gzm_A Glutamate racemase; en 53.0 16 0.00047 17.0 4.9 69 2-89 2-72 (156) 115 >2q7x_A UPF0052 protein SP_156 52.7 16 0.00047 16.9 4.4 80 3-97 4-86 (210) 116 >1vjt_A Alpha-glucosidase; TM0 52.7 9.4 0.00028 18.5 2.3 39 1-39 9-50 (265) 117 >1h6d_A Precursor form of gluc 52.6 16 0.00047 16.9 7.2 76 2-90 82-158 (210) 118 >2ez9_A Pyruvate oxidase; TPP 51.6 17 0.00049 16.8 3.8 102 14-117 11-126 (229) 119 >2vvt_A Glutamate racemase; is 51.5 17 0.00049 16.8 4.5 68 3-89 24-93 (179) 120 >3c48_A Predicted glycosyltran 51.3 16 0.00047 17.0 3.3 111 3-115 20-157 (250) 121 >1vgw_A 4-diphosphocytidyl-2C- 51.1 17 0.0005 16.8 4.7 38 4-42 7-61 (231) 122 >3hft_A WBMS, polysaccharide d 50.6 9.4 0.00028 18.5 2.0 49 10-58 100-148 (257) 123 >1qv9_A F420-dependent methyle 50.5 3.5 0.0001 21.5 -0.2 32 30-61 64-99 (127) 124 >3f4l_A Putative oxidoreductas 50.3 17 0.00051 16.7 6.4 71 4-91 3-74 (125) 125 >1ps9_A 2,4-dienoyl-COA reduct 50.2 17 0.00051 16.7 4.9 124 1-143 10-135 (159) 126 >2ywb_A GMP synthase [glutamin 50.2 17 0.00051 16.7 7.1 57 2-63 20-84 (194) 127 >3dla_A Glutamine-dependent NA 49.5 18 0.00053 16.6 4.4 61 3-63 39-109 (231) 128 >3csu_A Protein (aspartate car 49.1 18 0.00053 16.6 9.1 98 3-118 3-119 (134) 129 >1gso_A Protein (glycinamide r 48.9 6.1 0.00018 19.8 0.8 81 4-100 3-83 (359) 130 >2i6g_A Putative methyltransfe 48.7 18 0.00054 16.5 4.2 79 4-99 33-113 (199) 131 >3hsk_A Aspartate-semialdehyde 48.6 18 0.00054 16.5 4.3 41 1-43 17-57 (190) 132 >3fef_A Putative glucosidase L 48.4 19 0.00055 16.5 4.6 35 1-36 3-39 (241) 133 >3fci_A UDG, uracil-DNA glycos 47.8 7.5 0.00022 19.2 1.1 53 68-121 142-197 (223) 134 >2gek_A Phosphatidylinositol m 47.6 14 0.0004 17.4 2.4 114 3-119 20-146 (237) 135 >3hn2_A 2-dehydropantoate 2-re 47.6 19 0.00056 16.4 5.1 30 2-36 1-31 (177) 136 >3a2k_A TRNA(Ile)-lysidine syn 47.5 19 0.00057 16.4 6.1 60 3-63 18-88 (215) 137 >3bio_A Oxidoreductase, GFO/ID 46.8 20 0.00058 16.3 5.4 38 1-41 6-44 (158) 138 >3eya_A Pyruvate dehydrogenase 46.6 20 0.00058 16.3 3.6 97 12-116 12-125 (180) 139 >3fni_A Putative diflavin flav 46.4 20 0.00059 16.3 4.3 16 1-16 2-18 (159) 140 >1ni5_A Putative cell cycle pr 45.8 20 0.0006 16.2 8.2 61 3-63 13-83 (234) 141 >1b7g_O Protein (glyceraldehyd 45.4 21 0.00061 16.2 7.8 54 4-61 2-55 (176) 142 >1wy5_A TILS, hypothetical UPF 45.3 21 0.00061 16.2 7.0 61 3-63 24-94 (217) 143 >1ddg_A Sulfite reductase (NAD 44.8 21 0.00062 16.1 3.6 39 3-41 5-44 (152) 144 >1gvh_A Flavohemoprotein; oxid 44.3 21 0.00063 16.1 4.0 39 3-41 6-45 (143) 145 >1obb_A Maltase, alpha-glucosi 44.1 21 0.00063 16.0 3.4 39 1-39 1-41 (371) 146 >3b3f_A Histone-arginine methy 44.1 21 0.00063 16.0 3.5 93 4-116 48-143 (149) 147 >1zq6_A Otcase, ornithine carb 43.7 11 0.00034 17.9 1.6 99 4-121 8-134 (137) 148 >2jfz_A Glutamate racemase; ce 43.5 22 0.00065 16.0 5.6 67 4-89 1-69 (139) 149 >2dwu_A Glutamate racemase; is 43.4 22 0.00065 16.0 4.7 68 3-89 7-76 (164) 150 >3hl0_A Maleylacetate reductas 43.3 22 0.00065 16.0 5.9 83 3-95 12-100 (159) 151 >1vkf_A Glycerol uptake operon 43.2 22 0.00065 15.9 6.7 93 4-105 32-149 (188) 152 >1o2d_A Alcohol dehydrogenase, 43.2 22 0.00066 15.9 6.7 81 12-95 25-111 (188) 153 >3hww_A 2-succinyl-5-enolpyruv 43.1 22 0.00066 15.9 3.4 10 156-165 191-200 (213) 154 >2zhx_A UDG, uracil-DNA glycos 43.1 11 0.00033 18.0 1.5 53 68-121 157-212 (238) 155 >1b73_A Glutamate racemase; is 43.0 22 0.00066 15.9 5.7 67 4-89 1-69 (135) 156 >3lop_A Substrate binding peri 42.9 22 0.00066 15.9 4.4 73 17-92 7-84 (162) 157 >3pfk_A Phosphofructokinase; t 42.6 23 0.00067 15.9 4.6 103 4-112 2-124 (186) 158 >2ejb_A Probable aromatic acid 42.3 23 0.00067 15.9 3.8 34 4-39 2-37 (189) 159 >1zxx_A 6-phosphofructokinase; 42.2 23 0.00068 15.8 5.0 101 4-110 2-122 (182) 160 >3fhl_A Putative oxidoreductas 42.1 23 0.00068 15.8 3.7 68 1-89 3-72 (126) 161 >1gpm_A GMP synthetase, XMP am 41.9 23 0.00068 15.8 5.4 57 2-62 22-87 (200) 162 >1m1n_B Nitrogenase molybdenum 41.9 23 0.00069 15.8 7.2 81 4-95 57-143 (215) 163 >4ubp_C Protein (urease (chain 41.2 24 0.0007 15.7 4.8 89 3-99 59-169 (379) 164 >3ist_A Glutamate racemase; st 40.7 24 0.00071 15.7 4.4 69 2-89 4-74 (157) 165 >1cf2_P Protein (glyceraldehyd 40.5 24 0.00072 15.7 7.1 52 4-59 2-53 (174) 166 >2uz1_A Benzaldehyde lyase; th 39.9 16 0.00047 16.9 1.8 11 48-58 140-150 (196) 167 >2i99_A MU-crystallin homolog; 39.9 25 0.00073 15.6 5.4 53 2-58 1-53 (160) 168 >2hmt_A YUAA protein; RCK, KTN 39.9 25 0.00073 15.6 5.7 74 1-89 4-77 (144) 169 >2j8x_A Uracil-DNA glycosylase 39.9 17 0.00051 16.7 2.0 95 15-117 42-148 (184) 170 >3gg2_A Sugar dehydrogenase, U 39.8 25 0.00073 15.6 3.0 33 2-41 1-34 (171) 171 >1ff9_A Saccharopine reductase 39.8 25 0.00073 15.6 4.3 31 1-35 1-31 (175) 172 >1t9b_A Acetolactate synthase, 39.7 25 0.00074 15.6 3.0 12 4-15 76-87 (192) 173 >2qk4_A Trifunctional purine b 39.4 12 0.00035 17.9 1.1 71 3-89 24-95 (120) 174 >4eug_A UDG, UNG, protein (gly 39.3 11 0.00032 18.1 0.9 98 16-121 44-153 (185) 175 >3lp8_A Phosphoribosylamine-gl 39.2 24 0.00072 15.7 2.7 26 1-28 19-44 (351) 176 >3cmu_A Protein RECA, recombin 38.7 26 0.00076 15.5 4.8 80 11-95 36-118 (281) 177 >3ip3_A Oxidoreductase, putati 37.7 23 0.00068 15.8 2.4 72 3-90 2-75 (129) 178 >1vi2_A Shikimate 5-dehydrogen 37.6 27 0.00079 15.4 3.7 33 3-38 3-35 (135) 179 >1fdr_A Flavodoxin reductase; 37.6 27 0.00079 15.4 4.0 41 3-43 7-48 (149) 180 >3e82_A Putative oxidoreductas 37.6 27 0.00079 15.4 6.0 69 3-91 7-76 (127) 181 >2o8v_A Phosphoadenosine phosp 37.4 27 0.0008 15.3 5.5 55 3-62 45-107 (252) 182 >2yv2_A Succinyl-COA synthetas 37.3 27 0.0008 15.3 2.8 65 3-89 13-78 (129) 183 >1ml4_A Aspartate transcarbamo 36.7 28 0.00082 15.3 7.5 98 3-118 3-119 (124) 184 >2p0y_A Hypothetical protein L 36.6 28 0.00082 15.3 3.9 32 3-38 10-41 (341) 185 >1b0z_A Protein (phosphoglucos 35.7 29 0.00085 15.2 3.9 48 7-54 30-84 (174) 186 >2yxe_A Protein-L-isoaspartate 34.9 29 0.00087 15.1 5.1 86 4-104 79-168 (215) 187 >1zun_A Sulfate adenylyltransf 34.1 30 0.0009 15.0 5.5 57 4-62 47-112 (325) 188 >2boo_A UDG, uracil-DNA glycos 33.8 19 0.00056 16.4 1.4 57 68-125 161-222 (247) 189 >1pg5_A Aspartate carbamoyltra 33.7 31 0.00091 15.0 7.8 97 3-119 4-119 (123) 190 >1vpa_A 2-C-methyl-D-erythrito 33.7 31 0.00091 15.0 7.4 39 1-40 11-66 (234) 191 >1vgv_A UDP-N-acetylglucosamin 33.3 31 0.00092 14.9 7.1 188 4-197 1-208 (213) 192 >3i45_A Twin-arginine transloc 33.3 31 0.00092 14.9 4.8 35 4-38 19-56 (200) 193 >3cmu_A Protein RECA, recombin 33.0 32 0.00093 14.9 4.8 75 11-90 36-113 (278) 194 >2o2z_A Hypothetical protein; 32.9 32 0.00094 14.9 5.7 32 3-38 4-35 (323) 195 >1efp_A ETF, protein (electron 32.8 32 0.00094 14.9 2.9 74 44-119 31-108 (128) 196 >1ybh_A Acetolactate synthase, 32.5 24 0.0007 15.7 1.7 70 17-91 6-89 (174) 197 >2rgw_A Aspartate carbamoyltra 32.3 32 0.00096 14.8 8.6 96 3-118 4-119 (134) 198 >3k89_A Malonyl COA-ACP transa 32.1 21 0.00063 16.1 1.5 16 1-16 1-16 (241) 199 >3d6n_B Aspartate carbamoyltra 31.9 28 0.00083 15.2 2.0 21 101-123 115-135 (147) 200 >2q1s_A Putative nucleotide su 31.8 33 0.00098 14.7 3.4 34 1-37 30-63 (363) 201 >3cmw_A Protein RECA, recombin 31.6 33 0.00098 14.7 5.3 80 11-95 36-118 (279) 202 >2ppv_A Uncharacterized protei 31.5 33 0.00099 14.7 5.4 32 3-38 4-35 (332) 203 >1ws6_A Methyltransferase; str 31.5 33 0.00099 14.7 3.8 81 4-99 43-128 (171) 204 >2dc1_A L-aspartate dehydrogen 31.2 34 0.001 14.7 7.5 34 4-41 1-34 (133) 205 >1f0y_A HCDH, L-3-hydroxyacyl- 30.8 34 0.001 14.6 3.1 30 146-175 159-188 (204) 206 >1p3d_A UDP-N-acetylmuramate-- 30.8 34 0.001 14.6 7.8 51 3-58 18-68 (116) 207 >1jgt_A Beta-lactam synthetase 30.7 34 0.001 14.6 3.2 55 3-62 28-88 (300) 208 >2q28_A Oxalyl-COA decarboxyla 30.7 28 0.00082 15.3 1.8 74 15-92 8-89 (177) 209 >3cmu_A Protein RECA, recombin 30.7 34 0.001 14.6 4.8 75 11-90 36-113 (278) 210 >2bgi_A Ferredoxin-NADP(H) red 30.5 35 0.001 14.6 3.0 41 3-43 8-49 (160) 211 >3k96_A Glycerol-3-phosphate d 30.4 35 0.001 14.6 4.8 48 1-56 27-75 (204) 212 >2e18_A NH(3)-dependent NAD(+) 29.7 36 0.0011 14.5 5.6 59 3-64 22-86 (129) 213 >1qzu_A Hypothetical protein M 29.6 36 0.0011 14.5 4.2 37 3-40 19-57 (206) 214 >1oi7_A Succinyl-COA synthetas 29.4 34 0.001 14.7 2.1 65 3-90 7-72 (122) 215 >2hma_A Probable tRNA (5-methy 29.2 36 0.0011 14.5 7.2 55 3-62 9-79 (199) 216 >2pia_A Phthalate dioxygenase 29.2 36 0.0011 14.5 5.0 88 4-102 4-99 (121) 217 >2pq6_A UDP-glucuronosyl/UDP-g 28.9 37 0.0011 14.4 5.0 19 155-173 251-269 (276) 218 >1krh_A Benzoate 1,2-dioxygena 28.7 37 0.0011 14.4 8.2 40 3-42 5-45 (133) 219 >2ozp_A N-acetyl-gamma-glutamy 28.1 38 0.0011 14.3 5.0 39 1-41 1-40 (176) 220 >2vbi_A Pyruvate decarboxylase 28.1 26 0.00077 15.5 1.3 20 149-170 175-194 (218) 221 >3c1a_A Putative oxidoreductas 28.0 38 0.0011 14.3 4.2 120 3-151 10-135 (170) 222 >3llv_A Exopolyphosphatase-rel 28.0 38 0.0011 14.3 7.7 73 2-89 5-77 (141) 223 >2fp4_A Succinyl-COA ligase [G 27.8 37 0.0011 14.4 2.0 65 3-89 14-78 (130) 224 >3fbt_A Chorismate mutase and 27.5 39 0.0011 14.3 4.1 46 1-51 1-46 (117) 225 >1zmo_A Halohydrin dehalogenas 27.3 39 0.0012 14.2 4.6 82 7-93 3-90 (244) 226 >1uc8_A LYSX, lysine biosynthe 27.1 37 0.0011 14.4 2.0 74 35-113 3-82 (99) 227 >3cmw_A Protein RECA, recombin 26.5 40 0.0012 14.1 5.3 75 11-90 32-109 (274) 228 >1mvl_A PPC decarboxylase atha 26.2 41 0.0012 14.1 4.8 35 3-40 19-55 (209) 229 >3hut_A Putative branched-chai 26.0 41 0.0012 14.1 5.6 72 18-92 5-81 (119) 230 >2i2x_B MTAC, methyltransferas 25.6 42 0.0012 14.0 8.0 99 2-104 4-105 (140) 231 >1tq8_A Hypothetical protein R 25.2 43 0.0013 14.0 7.6 83 3-89 17-126 (128) 232 >3fwz_A Inner membrane protein 25.1 43 0.0013 14.0 8.1 74 1-89 5-78 (140) 233 >2v0h_A Bifunctional protein G 25.0 34 0.001 14.7 1.5 39 1-40 1-58 (223) 234 >1w55_A ISPD/ISPF bifunctional 24.9 37 0.0011 14.4 1.6 39 1-40 1-56 (197) 235 >1rrm_A Lactaldehyde reductase 24.6 44 0.0013 13.9 5.4 79 12-95 15-101 (183) 236 >3k8d_A 3-deoxy-manno-octuloso 24.5 44 0.0013 13.9 6.0 37 1-38 14-66 (264) 237 >2f8n_G Core histone macro-H2A 24.5 25 0.00073 15.6 0.7 17 104-120 102-119 (120) 238 >1pzg_A LDH, lactate dehydroge 24.5 44 0.0013 13.9 4.2 40 3-45 9-48 (331) 239 >1qfj_A Protein (flavin reduct 24.3 44 0.0013 13.9 8.1 39 3-41 6-45 (136) 240 >1ybh_A Acetolactate synthase, 24.2 44 0.0013 13.9 3.5 35 5-42 73-110 (218) 241 >3eyw_A C-terminal domain of g 24.0 45 0.0013 13.8 6.9 73 2-89 3-75 (123) 242 >1ys4_A Aspartate-semialdehyde 23.9 45 0.0013 13.8 5.9 39 1-41 6-44 (173) 243 >1udg_A Uracil-DNA glycosylase 23.8 24 0.00072 15.7 0.5 103 16-126 43-158 (175) 244 >3cxm_A Uracil-DNA glycosylase 23.6 22 0.00067 15.9 0.3 98 16-121 43-154 (186) 245 >1ko7_A HPR kinase/phosphatase 23.6 45 0.0013 13.8 3.2 29 34-62 83-113 (129) 246 >2qdx_A Ferredoxin reductase; 23.6 31 0.00091 15.0 1.0 40 3-42 7-47 (158) 247 >2cwd_A Low molecular weight p 23.6 46 0.0013 13.8 3.9 59 1-59 1-72 (161) 248 >2z1m_A GDP-D-mannose dehydrat 23.6 46 0.0014 13.8 6.6 81 1-89 1-82 (178) 249 >3hhd_A Fatty acid synthase; t 23.6 44 0.0013 13.9 1.8 14 3-16 2-15 (164) 250 >1x7d_A Ornithine cyclodeamina 23.5 46 0.0014 13.8 5.3 76 2-89 2-77 (169) 251 >1tzy_A Histone H2A-IV; histon 23.4 26 0.00077 15.5 0.6 17 107-123 109-125 (129) 252 >2nqb_C Histone H2A; nucleosom 23.4 27 0.00079 15.4 0.7 15 107-121 107-121 (123) 253 >2der_A TRNA-specific 2-thiour 23.2 46 0.0014 13.7 3.3 55 3-62 17-87 (207) 254 >1ozh_A ALS, acetolactate synt 23.2 46 0.0014 13.7 4.0 34 5-41 73-109 (200) 255 >3cf4_G Acetyl-COA decarbonyla 23.2 46 0.0014 13.7 1.9 99 16-119 23-148 (170) 256 >3eua_A Putative fructose-amin 23.1 46 0.0014 13.7 5.3 33 30-62 74-110 (155) 257 >2rir_A Dipicolinate synthase, 23.1 46 0.0014 13.7 8.8 88 2-110 29-118 (144) 258 >1tzf_A Glucose-1-phosphate cy 23.1 46 0.0014 13.7 2.1 18 2-19 1-18 (231) 259 >3hba_A Putative phosphosugar 23.1 47 0.0014 13.7 4.3 33 30-62 49-85 (106) 260 >2cfc_A 2-(R)-hydroxypropyl-CO 23.0 47 0.0014 13.7 4.3 80 1-88 1-86 (250) 261 >3lft_A Uncharacterized protei 22.8 47 0.0014 13.7 6.6 65 3-91 2-71 (148) 262 >1o0s_A NAD-ME, NAD-dependent 22.8 22 0.00066 15.9 0.2 31 73-103 115-146 (300) 263 >3k9w_A Phosphopantetheine ade 22.7 30 0.00089 15.0 0.8 36 2-41 3-44 (127) 264 >2fqx_A Membrane lipoprotein T 22.6 48 0.0014 13.6 3.0 45 44-92 27-72 (147) 265 >1mjh_A Protein (ATP-binding d 22.5 48 0.0014 13.6 6.8 85 1-90 3-128 (162) 266 >2hg4_A DEBS, 6-deoxyerythrono 22.3 48 0.0014 13.7 1.8 19 156-174 196-214 (232) 267 >1x3l_A Hypothetical protein P 22.3 42 0.0012 14.0 1.5 71 3-84 26-100 (244) 268 >2cu2_A Putative mannose-1-pho 22.2 31 0.00092 14.9 0.8 19 2-20 1-19 (263) 269 >3d1l_A Putative NADP oxidored 22.1 49 0.0014 13.6 4.8 51 1-57 8-59 (167) 270 >3elb_A Ethanolamine-phosphate 22.1 15 0.00044 17.1 -0.8 20 69-88 78-97 (127) 271 >1vlj_A NADH-dependent butanol 22.0 49 0.0014 13.6 6.2 79 12-95 27-114 (193) 272 >2b8n_A Glycerate kinase, puta 22.0 43 0.0013 13.9 1.5 74 3-84 15-92 (227) 273 >2vz8_A Fatty acid synthase; t 21.9 49 0.0015 13.6 1.9 15 2-16 1-15 (166) 274 >3dty_A Oxidoreductase, GFO/ID 21.8 49 0.0015 13.5 6.7 80 1-89 9-92 (226) 275 >1fxo_A Glucose-1-phosphate th 21.3 35 0.001 14.6 0.9 18 2-19 1-18 (293) 276 >2vch_A Hydroquinone glucosylt 21.3 50 0.0015 13.5 4.2 25 34-58 112-136 (276) 277 >2j8z_A Quinone oxidoreductase 21.2 51 0.0015 13.5 5.9 78 8-95 8-86 (131) 278 >2ewd_A Lactate dehydrogenase, 21.0 51 0.0015 13.4 4.4 37 1-40 1-38 (317) 279 >1hm9_A GLMU, UDP-N-acetylgluc 20.8 49 0.0014 13.6 1.6 37 1-38 9-62 (232) 280 >2pg3_A Queuosine biosynthesis 20.8 52 0.0015 13.4 7.7 55 3-62 2-64 (162) 281 >2c31_A Oxalyl-COA decarboxyla 20.7 52 0.0015 13.4 2.1 75 15-92 8-89 (179) 282 >3ksm_A ABC-type sugar transpo 20.6 52 0.0015 13.4 2.3 15 115-129 106-120 (140) 283 >1m3s_A Hypothetical protein Y 20.5 52 0.0015 13.4 4.6 30 32-61 81-114 (186) 284 >3eag_A UDP-N-acetylmuramate:L 20.4 52 0.0016 13.4 8.1 69 3-89 4-73 (105) 285 >1di6_A MOGA, molybdenum cofac 20.3 53 0.0016 13.3 3.2 13 1-13 1-13 (195) 286 >2ew2_A 2-dehydropantoate 2-re 20.2 53 0.0016 13.3 4.3 32 2-38 2-34 (182) No 1 >>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} (A:94-292) Probab=100.00 E-value=2.5e-41 Score=305.24 Aligned_cols=198 Identities=25% Similarity=0.351 Sum_probs=183.1 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .|+|||||+||.|+||++|+++.+.+..+++|++|+|++++... ++...++|....... ...+..++.++.+.++++ T Consensus 1 ~~~ki~~~gs~~~~~l~~ll~~~~~~~~~~~i~~vvt~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 77 (199) T 3lou_A 1 ARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHPDFAP--LAAQHGLPFRHFPIT-ADTKAQQEAQWLDVFETS 77 (199) T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHH--HHHHTTCCEEECCCC-SSCHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHH--HHHHHCCCEEEEECC-CCCHHHHHHHHHHHHHHC T ss_conf 78459999769983699999998779987489999548957599--998626998999568-885678999999999754 Q ss_pred CCEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCC Q ss_conf 43036431122205721321066542313532233324442121000024653445303312321866267789987189 Q gi|254780570|r 82 QPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSS 161 (205) Q Consensus 82 ~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q~~~~i~~ 161 (205) +||++|++||++++|+++++.++.++||+|||+||.|||.+|++||+.||++++|+|+|+|++++|+|+|+.|+.+||.+ T Consensus 78 ~~D~iv~~~~~~ilp~~il~~~~~~~iN~HpslLP~yRG~~p~~wai~~g~~~~GvTih~i~~~~D~G~Ii~q~~~~i~~ 157 (199) T 3lou_A 78 GAELVILARYXQVLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVDH 157 (199) T ss_dssp TCSEEEESSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCT T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEECCC T ss_conf 98199980126707899997314781896555376788930999999839987778899996888788806899986599 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEE Q ss_conf 98999999999999999999999999869569989869995 Q gi|254780570|r 162 QDTESSLSQKVLSAEHLLYPLALKYTILGKTSNSNDHHHLI 202 (205) Q Consensus 162 ~d~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~~~~~~~ 202 (205) +||+++|+.|+..++.++++++++.+++|++....+++.+. T Consensus 158 ~dt~~~l~~~~~~~~~~l~~~~i~~l~~g~~~~~pQ~~~~~ 198 (199) T 3lou_A 158 SYRPEQLLAVGRDVECITLARAVKAFIERRVFLNGDRTVVF 198 (199) T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEEC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEE T ss_conf 99999999999999999999999999809989849988996 No 2 >>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} (A:) Probab=100.00 E-value=5.5e-41 Score=302.86 Aligned_cols=198 Identities=39% Similarity=0.706 Sum_probs=188.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 65999976985018999999973999847999997688887888998608950463013233221012432100012343 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) +||++|+||+|+||++|++++..+..+++|++|+||++++.+..++....++....+...+...+.++.++.+.++++++ T Consensus 1 mkI~~~gs~~~~~l~~ll~~~~~~~~~~~i~~v~t~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 80 (212) T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAP 80 (212) T ss_dssp CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCC T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC T ss_conf 97999982684789999998870999988999997898627788877505650565123579988999999999997099 Q ss_pred EEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCC Q ss_conf 03643112220572132106654231353223332444212100002465344530331232186626778998718998 Q gi|254780570|r 84 DLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQD 163 (205) Q Consensus 84 Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q~~~~i~~~d 163 (205) |++|+++|++++|+++++.+++++||+|||+||.|||.+|++||+.||++++|+|+|+|++++|+||||.|++++|.++| T Consensus 81 D~iv~~~~~~il~~~il~~~~~~~iN~HpslLP~yRG~~p~~wai~~g~~~~G~T~h~~~~~iD~G~Ii~q~~~~i~~~~ 160 (212) T 1jkx_A 81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD 160 (212) T ss_dssp SEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTC T ss_pred CEEEEECHHHHCCHHHHHHHCCCEEECCCCHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCC T ss_conf 99998152455799998655589378475000137788859999987998668469986678757985899998659999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEE Q ss_conf 99999999999999999999999986956998986999 Q gi|254780570|r 164 TESSLSQKVLSAEHLLYPLALKYTILGKTSNSNDHHHL 201 (205) Q Consensus 164 ~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~~~~~~ 201 (205) |..+|+.|+..++.++++++++.+++|++...+.++.. T Consensus 161 t~~~l~~~~~~~~~~l~~~~i~~l~~~~~~q~~~~~~y 198 (212) T 1jkx_A 161 SEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWL 198 (212) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEE T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEE T ss_conf 99999999999999999999999980997884998899 No 3 >>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} (A:) Probab=100.00 E-value=6.2e-41 Score=302.48 Aligned_cols=198 Identities=34% Similarity=0.622 Sum_probs=188.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) .+||+||+||+|+++.++++++.++..+++|++|+|+++++.+..++...+++....+...+..+...+.++.+.+++++ T Consensus 1 ~Mki~~~~sg~~~~~~~~l~~l~~~~~~~~iv~vvt~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (216) T 2ywr_A 1 XLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERXALELKKKG 80 (216) T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTT T ss_pred CCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC T ss_conf 95899998179567999999987399997799999758875213312146861267514332103343299999998519 Q ss_pred CEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCC Q ss_conf 30364311222057213210665423135322333244421210000246534453033123218662677899871899 Q gi|254780570|r 83 PDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQ 162 (205) Q Consensus 83 ~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q~~~~i~~~ 162 (205) +|+++++||++|+|+++++.+++++||+|||+||+|||++|++||+.||++++|+|+|+|++++|+|+|+.|++++|.++ T Consensus 81 ~Dl~i~~~~~~il~~~~l~~~~~g~iN~HpslLP~yRG~~p~~wai~ng~~~~G~Tih~~~~~~D~G~Ii~q~~~~i~~~ 160 (216) T 2ywr_A 81 VELVVLAGFXRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPE 160 (216) T ss_dssp CCEEEESSCCSCCCHHHHTTSTTCEEEEESSCTTTTCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTT T ss_pred CCEEEEEHHHHHCCHHHHHHHCCCEEECCCCCCHHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEECCC T ss_conf 96887222256558888754148758746657133411221345776077220524799604458862125689983899 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEE Q ss_conf 89999999999999999999999998695699898699 Q gi|254780570|r 163 DTESSLSQKVLSAEHLLYPLALKYTILGKTSNSNDHHH 200 (205) Q Consensus 163 d~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~~~~~ 200 (205) ||+.+|..|+..++.+++.++++.+++|++...+.+.. T Consensus 161 dt~~~l~~k~~~~~~~ll~~~l~~~~~~~~~~~~~~~~ 198 (216) T 2ywr_A 161 DDENTLADRILKWEHKILPQTVQWFAQDRIIIDGRKVI 198 (216) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEE T ss_conf 99999999999999999999999998199899699987 No 4 >>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} (A:) Probab=100.00 E-value=1.3e-40 Score=300.27 Aligned_cols=193 Identities=39% Similarity=0.656 Sum_probs=180.7 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) ++||++|+|+++||+..+++++.++....+++.++++++++.....|++++||.+..+.. ...+.++.+.+.+.+ T Consensus 8 ~~ki~~~gs~~~s~~~~~l~~l~~~~~~~~iv~~~~~~~~~~~~~~a~~~~i~~~~~~~~-----~~~~~~~~~~l~~~~ 82 (215) T 3kcq_A 8 ELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRK-----PLDIEHISTVLREHD 82 (215) T ss_dssp CEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBT-----TBCHHHHHHHHHHTT T ss_pred CCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEECCCC-----CCCHHHHHHHHHHCC T ss_conf 878999994987749999999776998839999995796537777877639987633786-----506899999998749 Q ss_pred CEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCC Q ss_conf 30364311222057213210665423135322333244421210000246534453033123218662677899871899 Q gi|254780570|r 83 PDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQ 162 (205) Q Consensus 83 ~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q~~~~i~~~ 162 (205) +|++|+++|++++|+++++.++.+++|+|||+||+|||.+|++||+.||++++|+|+|+|++++|+||||.|++++|.++ T Consensus 83 ~Dl~v~~~~~~ii~~~~l~~~~~~~iN~HpslLP~yRG~~p~~wai~ng~~~~GvTih~~~~~~D~G~Ii~q~~~~i~~~ 162 (215) T 3kcq_A 83 VDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLRE 162 (215) T ss_dssp CSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTT T ss_pred CCEEEEECCHHHCCHHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCC T ss_conf 99999924002267655102565641238743566688320778987798251658999706876898578999875999 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEE Q ss_conf 89999999999999999999999998695699898699 Q gi|254780570|r 163 DTESSLSQKVLSAEHLLYPLALKYTILGKTSNSNDHHH 200 (205) Q Consensus 163 d~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~~~~~ 200 (205) ||..+|..|+..++++++.++++.+.+|++...++++. T Consensus 163 ~t~~~l~~~~~~~~~~l~~~~l~~i~~~~~~~~~~~~~ 200 (215) T 3kcq_A 163 DTAESLASRILAAEHVCYPKGVKLIAQDKIKLCDDGTV 200 (215) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECTTSCE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCE T ss_conf 99999999999999999999999999699478779967 No 5 >>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} (A:) Probab=100.00 E-value=2.6e-40 Score=298.20 Aligned_cols=196 Identities=41% Similarity=0.683 Sum_probs=186.8 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 65999976985018999999973999847999997688887888998608950463013233221012432100012343 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) .||++|+|++||||++|++++..+..+++|++|+|+++++.+..+.....+.....+...+..+...+.++.+.+++.+| T Consensus 1 ~rI~~~gs~~~s~l~~ll~~~~~~~~~~~i~~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (209) T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSI 80 (209) T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 98999982784659999999766999978999996897557776777539861564342458988889999999986099 Q ss_pred EEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCC Q ss_conf 03643112220572132106654231353223332444212100002465344530331232186626778998718998 Q gi|254780570|r 84 DLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQD 163 (205) Q Consensus 84 Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q~~~~i~~~d 163 (205) |++|+++|++++|+++++.+++++||+|||+||+|||++|++||+.+|++++|+|+|+|++++|+|||+.|++++|.++| T Consensus 81 D~~v~~~~~~ii~~~~l~~~~~~~iN~HpslLP~yRG~~p~~wai~~g~~~~G~Tih~~~~~~D~G~Ii~q~~~~i~~~d 160 (209) T 1meo_A 81 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGD 160 (209) T ss_dssp CEEEEESCCSCCCHHHHHHTTTSEEEEESSSTTSSCSSCHHHHHHHHTCSEEEEEEEECCC---CCCEEEEEEEECCTTC T ss_pred CEEEEECCCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCC T ss_conf 99999643410669999727688277378757654313789999986990677799996078868985789998759999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEE Q ss_conf 999999999999999999999999869569989869 Q gi|254780570|r 164 TESSLSQKVLSAEHLLYPLALKYTILGKTSNSNDHH 199 (205) Q Consensus 164 ~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~~~~ 199 (205) |+.+|..|+..++.+++.++|+.+++|+....+++. T Consensus 161 t~~~l~~~~~~~~~~ll~~~l~~l~~~~~~~~~d~~ 196 (209) T 1meo_A 161 TVATLSERVKLAEHKIFPAALQLVASGTVQLGENGK 196 (209) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSEEECTTSS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCE T ss_conf 999999999999999999999999839969889987 No 6 >>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* (A:) Probab=100.00 E-value=1.3e-39 Score=293.41 Aligned_cols=198 Identities=34% Similarity=0.544 Sum_probs=184.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) ++||++|+|++++||++++++.. ++.++++++|+|+++ ......++..++|+...+...+..+...++++.+.+++.+ T Consensus 12 pmki~~~gs~~~~~l~~ll~~~~-~~~~~~i~~v~t~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (215) T 3da8_A 12 PARLVVLASGTGSLLRSLLDAAV-GDYPARVVAVGVDRE-CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHE 89 (215) T ss_dssp SEEEEEEESSCCHHHHHHHHHSS-TTCSEEEEEEEESSC-CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTC T ss_pred CCEEEEEECCCCHHHHHHHHHHC-CCCCCEEEEEEECCC-HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC T ss_conf 88899998378155999999638-799977999995686-6676653431686467402210136788888776554303 Q ss_pred CEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCC Q ss_conf 30364311222057213210665423135322333244421210000246534453033123218662677899871899 Q gi|254780570|r 83 PDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQ 162 (205) Q Consensus 83 ~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q~~~~i~~~ 162 (205) +|++|+++|++++|+++++.++.+++|+|||+||+|||++|++||+.+|++++|+|+|+|++++|+|||+.|+++||.++ T Consensus 90 ~Dl~v~~~~~~iip~~~l~~~~~~~iN~Hps~LP~yRG~~p~~wai~~g~~~~G~TiH~i~~~~D~G~Ii~q~~~~i~~~ 169 (215) T 3da8_A 90 PDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDG 169 (215) T ss_dssp CSEEEEEECCSCCCHHHHHHHTTTEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEECCTT T ss_pred CCEEEECCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCEECEEEEEEECCCCCCCEEEEEEEECCCC T ss_conf 32144114102430100001222233337776432002320456764488275407899725667652677789980899 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEE Q ss_conf 8999999999999999999999999869569989869995 Q gi|254780570|r 163 DTESSLSQKVLSAEHLLYPLALKYTILGKTSNSNDHHHLI 202 (205) Q Consensus 163 d~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~~~~~~~ 202 (205) ||..+|..|+..++.+++.++++.+.+|++....+++... T Consensus 170 dt~~~l~~~~~~~~~~l~~~~l~~l~~~~~~~~~Q~~ty~ 209 (215) T 3da8_A 170 DDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMG 209 (215) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTEEEEC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEC T ss_conf 9999999999999999999999999829987989897986 No 7 >>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} (A:1-204) Probab=100.00 E-value=3.2e-37 Score=276.88 Aligned_cols=184 Identities=22% Similarity=0.318 Sum_probs=159.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHH----------HHHHHCCCCEEEEECCCCCCCCCHHH Q ss_conf 66599997698501899999997399984799999768888788----------89986089504630132332210124 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGL----------VKARKEKVPTFPIPYKDYISRREHEK 72 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l----------~~a~~~~Ip~~~i~~~~~~~~~~~~~ 72 (205) |+||++ +|+|+.+..++++..+. +++|+.|+|+++++.+. ..|++++||++.. ....+. T Consensus 3 ~mki~~--~g~~~~~~~~l~~L~~~--~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~ 71 (204) T 1fmt_A 3 SLRIIF--AGTPDFAARHLDALLSS--GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQP-------VSLRPQ 71 (204) T ss_dssp CCEEEE--EECSHHHHHHHHHHHHT--TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECC-------SCSCSH T ss_pred CCEEEE--ECCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEECC-------CCCCCH T ss_conf 618999--86788999999999978--9967999959997455787588898999999859968746-------768989 Q ss_pred HHHHHCCCCCCEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEE Q ss_conf 32100012343036431122205721321066542313532233324442121000024653445303312321866267 Q gi|254780570|r 73 AILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPII 152 (205) Q Consensus 73 ~l~~~l~~~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii 152 (205) ++.+.+++.+||++|+++|++++|+++++.+++++||+|||+||+|||.+|+.||+.||++++|+|+|+|++++|+|||+ T Consensus 72 ~~~~~l~~~~~Dliv~~~~~~ii~~~il~~~~~~~iN~HpslLP~yRG~~p~~wai~ng~~~~G~TiH~~~~~iD~G~Ii 151 (204) T 1fmt_A 72 ENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDML 151 (204) T ss_dssp HHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEE T ss_pred HHHHHHHHHCCCEEEEECCHHHCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCCCEE T ss_conf 99999986498999994601238999994277999998177466778989899999859974889879851688777758 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC Q ss_conf 789987189989999999999999999999999998695699898 Q gi|254780570|r 153 AQAAVPVSSQDTESSLSQKVLSAEHLLYPLALKYTILGKTSNSND 197 (205) Q Consensus 153 ~q~~~~i~~~d~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~~ 197 (205) .|++++|.++||+++|+.|+..++.+++.++++.+.+|+++...+ T Consensus 152 ~q~~~~I~~~dt~~~l~~~~~~~~~~l~~~~i~~l~~~~~~~~~Q 196 (204) T 1fmt_A 152 YKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQ 196 (204) T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCC T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999876699999999999999999999999999997499552528 No 8 >>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} (A:1-232) Probab=100.00 E-value=4.2e-37 Score=276.04 Aligned_cols=194 Identities=18% Similarity=0.221 Sum_probs=167.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCC--HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 9866599997698501899999997399984799999768888--78889986089504630132332210124321000 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNA--QGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da--~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) |..+|+.|+++|+|+.+.+++++...+...+.++++++++++. .....|+++++|..... ...++..++.++.+.+ T Consensus 18 ~~~~~~~i~~~G~~~~~~~~l~~l~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~i~~~~~~--~~~~~~~~~~~~~~~l 95 (232) T 2bw0_A 18 LYFQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYS--RWRAKGQALPDVVAKY 95 (232) T ss_dssp ---CCCEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECS--CCEETTEECHHHHHHH T ss_pred HHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEECCC--CCCCCCCCCHHHHHHH T ss_conf 87543289998897999999999998899789999289989898979999998399887643--3687001489999999 Q ss_pred CCCCCEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEE Q ss_conf 12343036431122205721321066542313532233324442121000024653445303312321866267789987 Q gi|254780570|r 79 SSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVP 158 (205) Q Consensus 79 ~~~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q~~~~ 158 (205) ++++||++|+++|++++++++++.+++++||+|||+||+|||.+|++||+.||++++|+|+|+|++++|+||||.|++++ T Consensus 96 ~~~~~D~~v~~~~~~ii~~~~l~~~~~~~iN~HpslLP~yRG~~p~~wai~nge~~~GvTiH~i~~~iD~G~Ii~q~~~~ 175 (232) T 2bw0_A 96 QALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECE 175 (232) T ss_dssp HTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCSSSSCSCEEEEEEEE T ss_pred HHHCCCCCHHHHHHHCCCEEEECCCCCHHHHCCCCHHHCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCEEECCCC T ss_conf 86099731123322123313300017858767787254378864020010310145573455302334666510153334 Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCEEEEC Q ss_conf 189989999999999-99999999999999869569989 Q gi|254780570|r 159 VSSQDTESSLSQKVL-SAEHLLYPLALKYTILGKTSNSN 196 (205) Q Consensus 159 i~~~d~~~~l~~rv~-~~E~~l~~~~i~~~~~g~i~~~~ 196 (205) |.++||..+|+.|++ .++.++++++++.+.+|+++... T Consensus 176 I~~~dt~~~l~~k~~~~~~~~ll~~~l~~l~~~~~~~~~ 214 (232) T 2bw0_A 176 VLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLP 214 (232) T ss_dssp CCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCCCCBC T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC T ss_conf 673122346677665321000467777663048621013 No 9 >>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} (A:1-207) Probab=100.00 E-value=2.2e-36 Score=271.16 Aligned_cols=180 Identities=23% Similarity=0.330 Sum_probs=158.9 Q ss_pred CEEEEEECCCCH--HHHHHHHHHHCCCCCCEEEEEEECCCCCHH-------HHHHHHCCCCEEEEECCCCCCCCCHHHHH Q ss_conf 659999769850--189999999739998479999976888878-------88998608950463013233221012432 Q gi|254780570|r 4 KNIVIFISGEGT--NMLSLIQATKKNDYPAEIVGVFSDNSNAQG-------LVKARKEKVPTFPIPYKDYISRREHEKAI 74 (205) Q Consensus 4 ~riavl~SG~Gs--nl~~Il~~~~~~~~~~eI~~Visn~~da~~-------l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l 74 (205) +||++|+|+.++ +|++|++. +++|+.|+|+.++... -..|...++|.+.. ...++.++ T Consensus 1 Mki~~~gs~~~~~~~l~~L~~~------~~~i~~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 67 (207) T 1z7e_A 1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAP-------DNVNHPLW 67 (207) T ss_dssp CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC--------CCHHHHHHHHTCCEECC-------SCTTSHHH T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEECC-------CCCCCHHH T ss_conf 9599991767899999999978------9978999838999977678887999999879968846-------98998999 Q ss_pred HHHCCCCCCEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEE Q ss_conf 10001234303643112220572132106654231353223332444212100002465344530331232186626778 Q gi|254780570|r 75 LMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQ 154 (205) Q Consensus 75 ~~~l~~~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q 154 (205) .+.+++.++|++++++|++|+|+++++.+++++||+|||+||+|||.+|++||+.||++++|+|+|+|++++|+|||+.| T Consensus 68 ~~~l~~~~~Dliv~~~~~~ii~~~~l~~~~~~~iN~Hps~LP~yRG~~p~~wai~~g~~~~G~T~h~~~~~iD~G~Ii~q 147 (207) T 1z7e_A 68 VERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQ 147 (207) T ss_dssp HHHHHHHCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECCSSTTTSCEEEE T ss_pred HHHHHHCCCCEEEEEHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEE T ss_conf 99998359899998102334699998148888799878768566780789999986997426389998623440104577 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC Q ss_conf 998718998999999999999999999999999869569989 Q gi|254780570|r 155 AAVPVSSQDTESSLSQKVLSAEHLLYPLALKYTILGKTSNSN 196 (205) Q Consensus 155 ~~~~i~~~d~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~ 196 (205) ++++|.++||+++|..|+..++.+++.++++.+.+++++... T Consensus 148 ~~~~i~~~dt~~~l~~~~~~~~~~l~~~~i~~l~~~~~~~~~ 189 (207) T 1z7e_A 148 LRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIA 189 (207) T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBC T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 301354202344556778999999999999999759986215 No 10 >>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} (A:1-207) Probab=100.00 E-value=2.2e-36 Score=271.16 Aligned_cols=180 Identities=23% Similarity=0.325 Sum_probs=159.1 Q ss_pred CEEEEEECCCCH--HHHHHHHHHHCCCCCCEEEEEEECCCCCH-------HHHHHHHCCCCEEEEECCCCCCCCCHHHHH Q ss_conf 659999769850--18999999973999847999997688887-------888998608950463013233221012432 Q gi|254780570|r 4 KNIVIFISGEGT--NMLSLIQATKKNDYPAEIVGVFSDNSNAQ-------GLVKARKEKVPTFPIPYKDYISRREHEKAI 74 (205) Q Consensus 4 ~riavl~SG~Gs--nl~~Il~~~~~~~~~~eI~~Visn~~da~-------~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l 74 (205) +||++|+|+.++ +|++|++. +++|+.|+|+.++.. .-..|...++|.+.. ...++.++ T Consensus 1 Mki~~~gs~~~~~~~l~~L~~~------~~~i~~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 67 (207) T 2bln_A 1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAP-------DNVNHPLW 67 (207) T ss_dssp CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECC-------SCCCSHHH T ss_pred CEEEEEECCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEE-------CCCCCHHH T ss_conf 9599990678999999999978------9988999838999977678688999999879989930-------30132467 Q ss_pred HHHCCCCCCEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEE Q ss_conf 10001234303643112220572132106654231353223332444212100002465344530331232186626778 Q gi|254780570|r 75 LMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQ 154 (205) Q Consensus 75 ~~~l~~~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q 154 (205) .+.+++.++|++++++|++|+|+++++.+++++||+|||+||+|||.+|++||+.||++++|+|+|+|++++|+|||+.| T Consensus 68 ~~~l~~~~~Dliv~~~~~~ii~~~~l~~~~~~~iN~Hps~LP~yRG~~p~~wai~~g~~~~G~T~h~~~~~iD~G~Ii~q 147 (207) T 2bln_A 68 VERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQ 147 (207) T ss_dssp HHHHHHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEE T ss_pred HHHHHHHCCCCCCCCCCCCHHHEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCEEE T ss_conf 77777634342101112310110110212557876355455432455401121214434422101130144556841014 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC Q ss_conf 998718998999999999999999999999999869569989 Q gi|254780570|r 155 AAVPVSSQDTESSLSQKVLSAEHLLYPLALKYTILGKTSNSN 196 (205) Q Consensus 155 ~~~~i~~~d~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~ 196 (205) ++++|.++||+++|..|+..++.+++.++++.+.+++++... T Consensus 148 ~~~~i~~~dt~~~l~~~~~~~~~~l~~~~i~~l~~~~~~~~~ 189 (207) T 2bln_A 148 LRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIA 189 (207) T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBC T ss_pred CCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 332344410112210201356788632001232222223344 No 11 >>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} (A:1-201) Probab=99.98 E-value=5.5e-33 Score=247.69 Aligned_cols=178 Identities=12% Similarity=0.197 Sum_probs=155.0 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 65999976985018999999973999847999997688887888998608950463013233221012432100012343 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) .+++.+.|++|+++..++.. +....++..++++++++...+.|++++||++.++. ..++.++.+.+++++| T Consensus 8 ~~il~~l~~~~~~l~~vi~~---~~~~~~i~~~~~~~~~~~~~~~a~~~~i~~~~~~~------~~~~~~~~~~l~~~~~ 78 (201) T 1zgh_A 8 HHHSSGLVPRGSQSTSLYKK---AGLXNIIIATTKSWNIKNAQKFKKENESKYNTTII------TNKDELTFEKVKLINP 78 (201) T ss_dssp -------------------------CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEE------CSGGGCCHHHHHHHCC T ss_pred CCCCCCCCCCCHHHHHHHHH---HHCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEE------CCCCHHHHHHHHHCCC T ss_conf 23201302362146667756---50255899955277799999999973045316764------1815888999985499 Q ss_pred EEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCC Q ss_conf 03643112220572132106654231353223332444212100002465344530331232186626778998718998 Q gi|254780570|r 84 DLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQD 163 (205) Q Consensus 84 Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D~G~Ii~q~~~~i~~~d 163 (205) |++|++||++++++.++..+ ++||+|||+||+|||++|++||+.+|++++|+|+|+|++++|+|+||.|+.++|+ | T Consensus 79 Dl~v~~~~~~i~~~~~~~~~--~~iN~Hps~LP~yRG~~p~~wai~~g~~~~G~Tih~~~~~iD~G~Ii~q~~~~i~--d 154 (201) T 1zgh_A 79 EYILFPHWSWIIPKEIFENF--TCVVFHXTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--G 154 (201) T ss_dssp SEEEESSCCSCCCHHHHTTS--CEEEEESSCTTTTEESCHHHHHHHTTCCEEEEEEEECCSSSSCSCEEEEEEEECC--S T ss_pred CEEEEECHHHHCCHHHHHCC--CCEEECCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCC--C T ss_conf 99999673322389999429--9857878689867455640365652544332056674035553000210112344--4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC Q ss_conf 9999999999999999999999998695699898 Q gi|254780570|r 164 TESSLSQKVLSAEHLLYPLALKYTILGKTSNSND 197 (205) Q Consensus 164 ~~~~l~~rv~~~E~~l~~~~i~~~~~g~i~~~~~ 197 (205) |+.+|..| +++++++++|+.+++|++....+ T Consensus 155 t~~~l~~k---~~~~~~~~~i~~i~~g~~~~~~Q 185 (201) T 1zgh_A 155 TAEEIFXR---ASKIIFNDXIPELLTKRPVPQKQ 185 (201) T ss_dssp CHHHHHHH---HHHHHHHTHHHHHHHHCCCCBCC T ss_pred CHHHHHHH---HHHHHHHHHCCCCCCCCCCCCCC T ss_conf 10356778---99998655223232221112334 No 12 >>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} (A:1-171,A:340-364) Probab=94.87 E-value=0.11 Score=31.83 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=61.9 Q ss_pred CCEEEEEECCCCH---HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCC---------- Q ss_conf 6659999769850---189999999739998479999976888878889986089504630132332210---------- Q gi|254780570|r 3 RKNIVIFISGEGT---NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRRE---------- 69 (205) Q Consensus 3 k~riavl~SG~Gs---nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~---------- 69 (205) ++||+++.++.|. .+.+|.+...+. +.+|..+.....+. -+..+..|+++..++......... T Consensus 6 ~mrIL~v~~~~gG~~~~~~~la~~L~~~--G~eV~v~~~~~~~~--~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 81 (196) T 1f0k_A 6 GKRLMVMAGGTGGHVFPGLAVAHHLMAQ--GWQVRWLGTADRME--ADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRI 81 (196) T ss_dssp -CEEEEECCSSHHHHHHHHHHHHHHHTT--TCEEEEEECTTSTH--HHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHH--HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 9879999178468799999999999978--89799997887065--5444442970899845786777789999869999 Q ss_pred --HHHHHHHHCCCCCCEEEEEEEEEEECCCHHHH-CCCCC-EEECCCCCCC Q ss_conf --12432100012343036431122205721321-06654-2313532233 Q gi|254780570|r 70 --HEKAILMQLSSIQPDLICLAGYMRLLSRDFVE-SYKNK-ILNIHPSLLP 116 (205) Q Consensus 70 --~~~~l~~~l~~~~~Dliv~~g~~~il~~~~l~-~~~~~-~iN~HpslLP 116 (205) .-.++.+.+++.+||+|++.++.--+..-+.. ..+.. ++-.|..... T Consensus 82 ~~~~~~l~~~l~~~kpDiI~~~~~~~~~~~~~~~~~~~ip~v~~~h~~~~~ 132 (196) T 1f0k_A 82 FNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAG 132 (196) T ss_dssp HHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSCC T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 999999999975029978997897341999999986699889982687743 No 13 >>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} (A:1-127,A:277-330) Probab=94.06 E-value=0.16 Score=30.68 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=45.3 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 98665999976985018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) |.|.|++|. |.|.-....+...+... ++++++|++.++ ....+.++++++|... .+ +-+.+.+ T Consensus 3 M~kirVgII--G~G~ia~~~~~~l~~~~-~~eIvaI~d~~~-eka~~~a~k~~i~~~~------~d-------~eell~~ 65 (181) T 3e9m_A 3 LDKIRYGIX--STAQIVPRFVAGLRESA-QAEVRGIASRRL-ENAQKXAKELAIPVAY------GS-------YEELCKD 65 (181) T ss_dssp CCCEEEEEC--SCCTTHHHHHHHHHHSS-SEEEEEEBCSSS-HHHHHHHHHTTCCCCB------SS-------HHHHHHC T ss_pred CCCCEEEEE--CCHHHHHHHHHHHHHCC-CCEEEEEECCCH-HHHHHHHHHCCCCEEE------CC-------HHHHHHC T ss_conf 778489999--88299999999997389-918999988999-9999999984998254------98-------9999717 Q ss_pred CCCEEEEEE Q ss_conf 343036431 Q gi|254780570|r 81 IQPDLICLA 89 (205) Q Consensus 81 ~~~Dliv~~ 89 (205) .++|+|+.+ T Consensus 66 ~~vD~V~I~ 74 (181) T 3e9m_A 66 ETIDIIYIP 74 (181) T ss_dssp TTCSEEEEC T ss_pred CCCCCCCCC T ss_conf 775511133 No 14 >>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} (A:1-128,A:277-329) Probab=92.27 E-value=0.24 Score=29.43 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=42.8 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 98665999976985018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) |.+.|+++++.| +-....+.+..... ++++++|++.++. .....++++++|...- + +-+.+.+ T Consensus 3 m~~irvgIIG~G--~~g~~~~~~l~~~~-~~eIvaI~d~~~e-ka~~~a~~~~~p~~~~------d-------~e~ll~~ 65 (181) T 3evn_A 3 LSKVRYGVVSTA--KVAPRFIEGVRLAG-NGEVVAVSSRTLE-SAQAFANKYHLPKAYD------K-------LEDMLAD 65 (181) T ss_dssp --CEEEEEEBCC--TTHHHHHHHHHHHC-SEEEEEEECSCSS-TTCC---CCCCSCEES------C-------HHHHHTC T ss_pred CCCCEEEEECCH--HHHHHHHHHHHHCC-CCEEEEEECCCHH-HHHHHHHHCCCCCEEC------C-------HHHHHCC T ss_conf 888589999982--99999999998689-9489999899999-9999999849982448------8-------9999638 Q ss_pred CCCEEEEEEE Q ss_conf 3430364311 Q gi|254780570|r 81 IQPDLICLAG 90 (205) Q Consensus 81 ~~~Dliv~~g 90 (205) .++|+|+.+. T Consensus 66 ~~iD~V~Iat 75 (181) T 3evn_A 66 ESIDVIYVAT 75 (181) T ss_dssp TTCCEEEECS T ss_pred CCCCHHCCCC T ss_conf 7644000234 No 15 >>3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} (A:1-127,A:299-354) Probab=92.09 E-value=0.59 Score=26.81 Aligned_cols=72 Identities=10% Similarity=0.066 Sum_probs=47.6 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 98665999976985018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) |.+.|+++. |.|+--...+.++..- ..++++.|++.+++ ..-..++++++|.+. + +.+.+.. T Consensus 3 m~~IrVgII--G~G~~g~~~~~al~~~-~~~eIvaV~dr~~e-~a~~~a~~~gi~~~~-------s-------~eell~~ 64 (183) T 3db2_A 3 YNPVGVAAI--GLGRWAYVXADAYTKS-EKLKLVTCYSRTED-KREKFGKRYNCAGDA-------T-------XEALLAR 64 (183) T ss_dssp CCCEEEEEE--CCSHHHHHHHHHHTTC-SSEEEEEEECSSHH-HHHHHHHHHTCCCCS-------S-------HHHHHHC T ss_pred CCCCEEEEE--CCHHHHHHHHHHHHHC-CCEEEEEEECCCHH-HHHHHHHHHCCCCCC-------C-------HHHHHCC T ss_conf 998789999--7709999999999748-99189999889999-999999983998428-------9-------9999559 Q ss_pred CCCEEEEEEE Q ss_conf 3430364311 Q gi|254780570|r 81 IQPDLICLAG 90 (205) Q Consensus 81 ~~~Dliv~~g 90 (205) .++|+++.+. T Consensus 65 ~~vD~ViIat 74 (183) T 3db2_A 65 EDVEXVIITV 74 (183) T ss_dssp SSCCEEEECS T ss_pred CCCCEEEEEC T ss_conf 9999999708 No 16 >>2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* (X:1-127,X:278-334) Probab=92.02 E-value=0.75 Score=26.08 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=44.8 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 8665999976985018999999973-999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKK-NDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~-~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) |+.|++++ |.|.-.......... ....++++.|.+.+ ....-++++++++|...-+ .-+.+.+ T Consensus 1 M~ir~gII--G~G~ia~~~~~~l~~~~~~~~~ivaV~~r~-~~~a~~fa~~~~~~~~~~s-------------~eell~d 64 (184) T 2o4u_X 1 MALRWGIV--SVGLISSDFTAVLQTLPRSEHQVVAVAARD-LSRAKEFAQKHDIPKAYGS-------------YEELAKD 64 (184) T ss_dssp -CEEEEEE--CCSHHHHHHHHHHTTSCTTTEEEEEEECSS-HHHHHHHHHHHTCSEEESS-------------HHHHHTC T ss_pred CCEEEEEE--CCCHHHHHHHHHHHHCCCCCEEEEEEECCC-HHHHHHHHHHCCCCCEECC-------------HHHHHCC T ss_conf 97689998--887999999999985868885999998799-9999999998399814389-------------9999659 Q ss_pred CCCEEEEEE Q ss_conf 343036431 Q gi|254780570|r 81 IQPDLICLA 89 (205) Q Consensus 81 ~~~Dliv~~ 89 (205) .++|+|+.+ T Consensus 65 ~~vD~V~Ia 73 (184) T 2o4u_X 65 PNVEVAYVG 73 (184) T ss_dssp TTCSEEEEC T ss_pred CCCCEEECC T ss_conf 897822202 No 17 >>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} (A:1-104) Probab=91.78 E-value=0.26 Score=29.23 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=44.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) ++||.|+.||... +|..+.+..+..+++.++=+ +|.+.++..+.+ ++.+|.. ..+.|-+.+++.+++.+ T Consensus 4 ~~kVLv~g~G~~~---al~~a~~~~~~~~~vi~~d~-~~~~~~~~~~d~----~~~iP~~---~~~~~~~~l~~i~~~~~ 72 (104) T 2pn1_A 4 KPHLLITSAGRRA---KLVEYFVKEFKTGRVSTADC-SPLASALYXADQ----HYIVPKI---DEVEYIDHLLTLCQDEG 72 (104) T ss_dssp CCEEEEESCTTCH---HHHHHHHHHCCSSEEEEEES-CTTCGGGGGSSS----EEECCCT---TSTTHHHHHHHHHHHHT T ss_pred CCEEEECCCCHHH---HHHHHHHHCCCCCEEEEECC-CCCCHHHHHCCE----EEECCCC---CCHHHHHHHHHHHHHHC T ss_conf 8789991784699---99999997699998999869-999867884286----7976898---73779999999999859 Q ss_pred CEEEEE Q ss_conf 303643 Q gi|254780570|r 83 PDLICL 88 (205) Q Consensus 83 ~Dliv~ 88 (205) +|+++. T Consensus 73 iD~vip 78 (104) T 2pn1_A 73 VTALLT 78 (104) T ss_dssp CCEEEE T ss_pred CCEEEE T ss_conf 998940 No 18 >>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:1-196,A:382-396) Probab=91.64 E-value=0.95 Score=25.38 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=60.4 Q ss_pred CCCCEEEEEECCCCH---HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCE-EEEECCCCC-CC----CCHH Q ss_conf 986659999769850---18999999973999847999997688887888998608950-463013233-22----1012 Q gi|254780570|r 1 MIRKNIVIFISGEGT---NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPT-FPIPYKDYI-SR----REHE 71 (205) Q Consensus 1 M~k~riavl~SG~Gs---nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~-~~i~~~~~~-~~----~~~~ 71 (205) |.++||+++. |+=. -+..+++++++.. .+++.+|.|...........++.+++. +.++..... +. ..-- T Consensus 23 ~~~~kI~~vt-GtR~e~~klaPli~~l~~~~-~~~~~lv~TGqH~~~~~~~i~~~g~~~~~~~~l~~~~~s~~~~~~~~~ 100 (211) T 3dzc_A 23 NAMKKVLIVF-GTRPEAIKMAPLVQQLCQDN-RFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGVTSKIL 100 (211) T ss_dssp -CCEEEEEEE-CSHHHHHHHHHHHHHHHHCT-TEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHH T ss_pred CCCCEEEEEE-EHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHH T ss_conf 6986199999-73271999999999997289-987799990899899999998459788720103889988999999999 Q ss_pred HHHHHHCCCCCCEEEEEEEEE-EECCCHHHH-CCCCCEEECCCCCCCC Q ss_conf 432100012343036431122-205721321-0665423135322333 Q gi|254780570|r 72 KAILMQLSSIQPDLICLAGYM-RLLSRDFVE-SYKNKILNIHPSLLPL 117 (205) Q Consensus 72 ~~l~~~l~~~~~Dliv~~g~~-~il~~~~l~-~~~~~~iN~HpslLP~ 117 (205) ..+.+.+...+||+|+..|=. --+..-+.. ..+..+.-++.++... T Consensus 101 ~~l~~~l~~~~PD~VlV~GD~~~~La~AlaA~~~~IPvaHieaGlrs~ 148 (211) T 3dzc_A 101 LGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLRTG 148 (211) T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCCCS T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 999998986267645400146542137777650355326850465556 No 19 >>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} (A:1-133) Probab=91.01 E-value=0.57 Score=26.92 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=39.5 Q ss_pred CCCEEEEEECCC--CHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 866599997698--501899999997399984799999768888788899860895046301 Q gi|254780570|r 2 IRKNIVIFISGE--GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY 61 (205) Q Consensus 2 ~k~riavl~SG~--Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~ 61 (205) ..|||+||.|.+ |++...+++.. .-.++|+++-.++.-..-.+.+++++.++.++.. T Consensus 8 ~mk~i~ILGSTGSIG~qtL~Vi~~~---~d~f~vv~lsa~~n~~~L~~q~~ef~p~~v~v~d 66 (133) T 1q0q_A 8 GMKQLTILGSTGSIGCSTLDVVRHN---PEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDD 66 (133) T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHC---TTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESS T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC---CCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEEC T ss_conf 9968999754879899999999839---4774899999489799999999983999999948 No 20 >>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} (A:1-125,A:255-302) Probab=90.10 E-value=1.2 Score=24.75 Aligned_cols=71 Identities=13% Similarity=-0.028 Sum_probs=45.1 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) |+.|+++. |.|.-....+.+..... +.++++|+. +.....-+.+++++++...- + +-+.+.+. T Consensus 1 MtlkVgiI--G~G~~g~~~l~al~~~~-~~eivai~d-~~~~~a~~~a~~~~~~~~~~------d-------~eell~~~ 63 (173) T 3ezy_A 1 MSLRIGVI--GLGRIGTIHAENLKMID-DAILYAISD-VREDRLREMKEKLGVEKAYK------D-------PHELIEDP 63 (173) T ss_dssp -CEEEEEE--CCSHHHHHHHHHGGGST-TEEEEEEEC-SCHHHHHHHHHHHTCSEEES------S-------HHHHHHCT T ss_pred CCEEEEEE--CCCHHHHHHHHHHHHCC-CCEEEEEEC-CCHHHHHHHHHHCCCCCCCC------C-------HHHHHCCC T ss_conf 97069999--97099999999997289-978999989-89999999999839985149------9-------99995499 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) ++|+|+.+ T Consensus 64 ~iD~VvIa 71 (173) T 3ezy_A 64 NVDAVLVC 71 (173) T ss_dssp TCCEEEEC T ss_pred CCCEEEEE T ss_conf 98999982 No 21 >>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:1-192,A:357-375) Probab=89.93 E-value=1.6 Score=23.90 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=59.6 Q ss_pred CCCEEEEEECCCCH--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHH--HHHCCCCEEEEECCCCC-----CCCCHHH Q ss_conf 86659999769850--189999999739998479999976888878889--98608950463013233-----2210124 Q gi|254780570|r 2 IRKNIVIFISGEGT--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVK--ARKEKVPTFPIPYKDYI-----SRREHEK 72 (205) Q Consensus 2 ~k~riavl~SG~Gs--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~--a~~~~Ip~~~i~~~~~~-----~~~~~~~ 72 (205) -++||.+.+.+.|. .+..|+++..+.... ...+|.+.......+.+ .....++...+...... .-..... T Consensus 7 ~~~kIli~ags~g~~~~~~~li~~L~~~~~~-~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211) T 3beo_A 7 ERLKVMTIFGTRPEAIKMAPLVLELQKHPEK-IESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLE 85 (211) T ss_dssp SCEEEEEEECSHHHHHHHHHHHHHHTTCTTT-EEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHHHHHH T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHH T ss_conf 6856999997267299999999999838789-888999916878999999997199988111058899779999999999 Q ss_pred HHHHHCCCCCCEEEEEEEEEE-ECCCHH-HHCCCCCEEECCCCCCCCCC Q ss_conf 321000123430364311222-057213-21066542313532233324 Q gi|254780570|r 73 AILMQLSSIQPDLICLAGYMR-LLSRDF-VESYKNKILNIHPSLLPLFP 119 (205) Q Consensus 73 ~l~~~l~~~~~Dliv~~g~~~-il~~~~-l~~~~~~~iN~HpslLP~yr 119 (205) .+...+++++||+|++.|... -++..+ ....+..++..+-++.+..+ T Consensus 86 ~~~~~l~~~kPD~V~v~~~~~~~l~~~laA~~~~IPvv~~~~~~~~~~~ 134 (211) T 3beo_A 86 GLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRTWDK 134 (211) T ss_dssp HHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCCSCT T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 8899887447550442014564201588887306317998524556774 No 22 >>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} (A:1-149) Probab=89.22 E-value=1.7 Score=23.55 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=43.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) +.|++++ |.|.-....+........++++++|.+.++ ....+.+++++++..... + +.+.+++.+ T Consensus 23 ~~ri~ii--G~G~~g~~~~~~~~~~~~~~~i~~i~~~~~-~~a~~~~~~~~~~~~~~~-----~-------~~~~l~~~~ 87 (149) T 3ec7_A 23 TLKAGIV--GIGXIGSDHLRRLANTVSGVEVVAVCDIVA-GRAQAALDKYAIEAKDYN-----D-------YHDLINDKD 87 (149) T ss_dssp CEEEEEE--CCSHHHHHHHHHHHHTCTTEEEEEEECSST-THHHHHHHHHTCCCEEES-----S-------HHHHHHCTT T ss_pred CEEEEEE--CCHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHCCCCCCCC-----C-------HHHHHCCCC T ss_conf 5149999--980999999999984699978999977999-999999998299974239-----8-------999963889 Q ss_pred CEEEEEE Q ss_conf 3036431 Q gi|254780570|r 83 PDLICLA 89 (205) Q Consensus 83 ~Dliv~~ 89 (205) +|+++.+ T Consensus 88 iD~V~i~ 94 (149) T 3ec7_A 88 VEVVIIT 94 (149) T ss_dssp CCEEEEC T ss_pred CCEEEEC T ss_conf 8889741 No 23 >>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} (A:1-125) Probab=89.20 E-value=0.96 Score=25.35 Aligned_cols=84 Identities=13% Similarity=0.004 Sum_probs=49.0 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) ++.|+++. |.|+-....+.+..... .++++.|++.++ ......++..+++.+. + +.+.+... T Consensus 3 ~~ikv~ii--G~G~~g~~~~~~l~~~~-~~eivav~d~~~-~~~~~~~~~~~~~~~~-------~-------~~~~~~~~ 64 (125) T 3euw_A 3 LTLRIALF--GAGRIGHVHAANIAANP-DLELVVIADPFI-EGAQRLAEANGAEAVA-------S-------PDEVFARD 64 (125) T ss_dssp CCEEEEEE--CCSHHHHHHHHHHHHCT-TEEEEEEECSSH-HHHHHHHHTTTCEEES-------S-------HHHHTTCS T ss_pred CCEEEEEE--CCCHHHHHHHHHHHCCC-CCEEEEEECCCH-HHHHHHHHHHCCCEEC-------C-------HHHHHCCC T ss_conf 86679899--97099999999997089-958999988999-9999999983997789-------8-------99995489 Q ss_pred CCEEEEEEEEEEECCCHHHHCC Q ss_conf 4303643112220572132106 Q gi|254780570|r 82 QPDLICLAGYMRLLSRDFVESY 103 (205) Q Consensus 82 ~~Dliv~~g~~~il~~~~l~~~ 103 (205) ++|+++.+.-...-.+...... T Consensus 65 ~~d~V~i~t~~~~h~~~~~~al 86 (125) T 3euw_A 65 DIDGIVIGSPTSTHVDLITRAV 86 (125) T ss_dssp CCCEEEECSCGGGHHHHHHHHH T ss_pred CCCEEEECCCCHHHHHHHHHHC T ss_conf 9886641121010123321001 No 24 >>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* (A:1-88) Probab=89.19 E-value=0.88 Score=25.60 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=26.6 Q ss_pred CCCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCEEEEEEECCCCC Q ss_conf 986659999769850-------1899999997399984799999768888 Q gi|254780570|r 1 MIRKNIVIFISGEGT-------NMLSLIQATKKNDYPAEIVGVFSDNSNA 43 (205) Q Consensus 1 M~k~riavl~SG~Gs-------nl~~Il~~~~~~~~~~eI~~Visn~~da 43 (205) |+|+||+|++-|..+ .+++++++ ++.++.-|..++... T Consensus 1 M~K~~I~vifGG~S~EheVSl~SA~~v~~~-----L~~~~~~v~I~~~g~ 45 (88) T 2fb9_A 1 MEFMRVLLIAGGVSPEHEVSLLSAEGVLRH-----IPFPTDLAVIAQDGR 45 (88) T ss_dssp CCCCCEEEEEECSSTTHHHHHHHHHHHHHH-----CSSCEEEEEECTTSC T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHH-----CCCCCCEEEEECCCC T ss_conf 987889999388841329999999999996-----487776799935886 No 25 >>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376) Probab=88.35 E-value=2 Score=23.16 Aligned_cols=160 Identities=9% Similarity=0.024 Sum_probs=72.7 Q ss_pred CCCEEEEEECCCCH---HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEE-EECC-CCCCCCC----HHH Q ss_conf 86659999769850---1899999997399984799999768888788899860895046-3013-2332210----124 Q gi|254780570|r 2 IRKNIVIFISGEGT---NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFP-IPYK-DYISRRE----HEK 72 (205) Q Consensus 2 ~k~riavl~SG~Gs---nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~-i~~~-~~~~~~~----~~~ 72 (205) .+|||+++. |+=. -+..+++++++.. .+++.+|.|-......+.-...++|.... +... ...+-.. -=. T Consensus 4 ~~kKIl~vt-GTRae~iklaPli~~l~~~~-~~e~~lv~TGqH~~~~~~~~~~~~i~~d~~l~~~~~~~sl~~~~~~~i~ 81 (204) T 1v4v_A 4 GXKRVVLAF-GTRPEATKXAPVYLALRGIP-GLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVXQERQALPDLAARILP 81 (204) T ss_dssp CCEEEEEEE-CSHHHHHHHHHHHHHHHTST-TEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHH T ss_pred CCCEEEEEE-EHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 998899998-75686999999999996189-9988999906874566471224088876567878988889999999999 Q ss_pred HHHHHCCCCCCEEEEEEEEEE-ECCCHHHH-CCCCCEEECCCCCCCCCCC-CCC--CCCHHCCCCCCCCCCEEEECCC-- Q ss_conf 321000123430364311222-05721321-0665423135322333244-421--2100002465344530331232-- Q gi|254780570|r 73 AILMQLSSIQPDLICLAGYMR-LLSRDFVE-SYKNKILNIHPSLLPLFPG-LHT--HRRVLQSGIKITGCTVHMVTAN-- 145 (205) Q Consensus 73 ~l~~~l~~~~~Dliv~~g~~~-il~~~~l~-~~~~~~iN~HpslLP~yrG-~~~--~~~ai~~g~~~~G~TiH~v~~~-- 145 (205) .+.+.+.+++||+|++.|=.- .+..-+.. ..+..+.-+|.++.-.-+- ..| +.+-... + =+++||+..+ T Consensus 82 ~~~~~l~~~~PD~VlV~GDt~~~lA~AlaA~~~~IPvaHieaGlrS~d~~~~~pEE~~R~~is--~--lA~lHF~~t~~~ 157 (204) T 1v4v_A 82 QAARALKEXGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTD--V--LTDLDFAPTPLA 157 (204) T ss_dssp HHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHHHHHHH--H--HCSEEEESSHHH T ss_pred HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHC--C--CCCEEEECCHHH T ss_conf 877665404765231013664311367889876344511103556666567734666554412--3--444365221166 Q ss_pred ----CCCCCEEEEEEEECCCCCCHHHH Q ss_conf ----18662677899871899899999 Q gi|254780570|r 146 ----MDEGPIIAQAAVPVSSQDTESSL 168 (205) Q Consensus 146 ----~D~G~Ii~q~~~~i~~~d~~~~l 168 (205) +-.|. -.++.+-+..+|....| T Consensus 158 ~~nL~~eG~-~~~rI~vvGn~~~~~~~ 183 (204) T 1v4v_A 158 KANLLKEGK-REEGILVTGQGDGKAGL 183 (204) T ss_dssp HHHHHTTTC-CGGGEEECCCCCSCHHH T ss_pred HHHHHHHCC-CCCCEEEECCCCCHHHH T ss_conf 777776225-55422442148987999 No 26 >>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A* (A:1-99) Probab=88.27 E-value=0.64 Score=26.56 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=29.9 Q ss_pred CCCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCEEEEEEECCCCCH Q ss_conf 986659999769850-------18999999973999847999997688887 Q gi|254780570|r 1 MIRKNIVIFISGEGT-------NMLSLIQATKKNDYPAEIVGVFSDNSNAQ 44 (205) Q Consensus 1 M~k~riavl~SG~Gs-------nl~~Il~~~~~~~~~~eI~~Visn~~da~ 44 (205) |+|+||+|++-|..+ .+.+++++.... ++++..+.-++.... T Consensus 1 M~k~~i~vlfGG~S~EheVSl~SA~~v~~aL~~~--~y~v~~i~i~~~g~~ 49 (99) T 2i87_A 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKD--KYHVDIIYITNDGDW 49 (99) T ss_dssp --CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTT--TEEEEEEEECTTCCE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCCCE T ss_conf 9998899996947744799999999999975263--897999998489977 No 27 >>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} (A:158-292) Probab=88.13 E-value=0.59 Score=26.79 Aligned_cols=101 Identities=7% Similarity=-0.030 Sum_probs=52.4 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEC----CCCCHHHHHHHHC------CCCEEEEECCCCCCCCCHHH Q ss_conf 6659999769850189999999739998479999976----8888788899860------89504630132332210124 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSD----NSNAQGLVKARKE------KVPTFPIPYKDYISRREHEK 72 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn----~~da~~l~~a~~~------~Ip~~~i~~~~~~~~~~~~~ 72 (205) .+|+++.+.++..-+.+++.... .++.++.++--. .|+...++++++. +......+ T Consensus 4 glkia~vGd~~~rv~~S~~~~~~--~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------ 69 (135) T 3grf_A 4 GIKFAYCGDSMNNVTYDLMRGCA--LLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFH------------ 69 (135) T ss_dssp GCCEEEESCCSSHHHHHHHHHHH--HHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEES------------ T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE------------ T ss_conf 72488726876553779999999--7799699965653456766999999999877523698499995------------ Q ss_pred HHHHHCCCCCCEEEEEEEE--E----------------EECCCHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 3210001234303643112--2----------------20572132106654231353223332444 Q gi|254780570|r 73 AILMQLSSIQPDLICLAGY--M----------------RLLSRDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 73 ~l~~~l~~~~~Dliv~~g~--~----------------~il~~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) .+.+.++ +.|+|..-.| + ..++.++++..+..++=+|| ||.+||. T Consensus 70 d~~eav~--~aDviyt~~w~~~~~~~~~~~~~~~~~~~y~vt~~ll~~ak~~aivmH~--LP~~Rg~ 132 (135) T 3grf_A 70 DCKKGCE--GVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNC--LPATRGE 132 (135) T ss_dssp SHHHHHT--TCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEEC--SCCCTTT T ss_pred CHHHHHC--CCCEEEECHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECC--CCCCCCC T ss_conf 7999854--7998985113312320667889998753313559999626999989799--9999888 No 28 >>1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} (A:1-119) Probab=87.96 E-value=0.85 Score=25.71 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=29.0 Q ss_pred CCCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 986659999769850-------189999999739998479999976888 Q gi|254780570|r 1 MIRKNIVIFISGEGT-------NMLSLIQATKKNDYPAEIVGVFSDNSN 42 (205) Q Consensus 1 M~k~riavl~SG~Gs-------nl~~Il~~~~~~~~~~eI~~Visn~~d 42 (205) |||+||+|++-|..+ .+.+++++... .++++..|.-++.. T Consensus 1 M~k~~I~vlfGG~S~EheVSi~Sa~~v~~~L~~--~~y~v~~i~i~k~g 47 (119) T 1e4e_A 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINK--EKYEPLYIGITKSG 47 (119) T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT--TTEEEEEEEECTTS T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC T ss_conf 998789999388853137499999999999887--29979999717997 No 29 >>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} (A:1-105,A:330-377) Probab=87.52 E-value=1.1 Score=25.00 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=30.2 Q ss_pred CCCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCEEEEEEECCCCC Q ss_conf 986659999769850-------1899999997399984799999768888 Q gi|254780570|r 1 MIRKNIVIFISGEGT-------NMLSLIQATKKNDYPAEIVGVFSDNSNA 43 (205) Q Consensus 1 M~k~riavl~SG~Gs-------nl~~Il~~~~~~~~~~eI~~Visn~~da 43 (205) |+|+||+|++-|..+ .+.+++++..... ++++..|..++... T Consensus 1 M~K~rIaVlfGG~SsEHeVSi~SA~~V~~aL~~~g-ky~V~~I~Itk~G~ 49 (153) T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATG-KYEIIVFAIAQNGF 49 (153) T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHS-SEEEEEEEECTTSC T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-CEEEEEEEECCCCC T ss_conf 99989999818896641618999999999876708-91499999768950 No 30 >>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} (A:1-110) Probab=86.47 E-value=1.2 Score=24.59 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=28.1 Q ss_pred CCCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 986659999769850-------189999999739998479999976888 Q gi|254780570|r 1 MIRKNIVIFISGEGT-------NMLSLIQATKKNDYPAEIVGVFSDNSN 42 (205) Q Consensus 1 M~k~riavl~SG~Gs-------nl~~Il~~~~~~~~~~eI~~Visn~~d 42 (205) |+|+||+|++-|..+ .+.+++++.... ++++..|.-++.. T Consensus 1 M~K~~I~vl~GG~S~EheVSi~SA~~v~~aL~~~--~y~v~~i~I~k~g 47 (110) T 3i12_A 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKT--RFDVVLLGIDKAG 47 (110) T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT--TEEEEEEEECTTS T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCC T ss_conf 9977899995857842899999999999975564--7979999986999 No 31 >>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} (A:1-125) Probab=86.39 E-value=1.5 Score=23.98 Aligned_cols=74 Identities=19% Similarity=0.108 Sum_probs=41.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 98665999976985018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) |.+.|+++. |.|+-....+.+..+.. +++++.|.+..+ ...-+.+++++.++.. ..+.+.. T Consensus 3 ~~~ikv~ii--G~G~~g~~~~~~l~~~~-~~~i~~i~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~ 63 (125) T 3e18_A 3 LKKYQLVIV--GYGGMGSYHVTLASAAD-NLEVHGVFDILA-EKREAAAQKGLKIYES---------------YEAVLAD 63 (125) T ss_dssp CCCEEEEEE--CCSHHHHHHHHHHHTST-TEEEEEEECSSH-HHHHHHHTTTCCBCSC---------------HHHHHHC T ss_pred CCCCCEEEE--CCCHHHHHHHHHHHHCC-CCEEEEEECCCH-HHHHHHHHCCCCEECC---------------HHHHHCC T ss_conf 887859999--36899999999998589-968999987999-9999988719971089---------------9999559 Q ss_pred CCCEEEEEEEEEE Q ss_conf 3430364311222 Q gi|254780570|r 81 IQPDLICLAGYMR 93 (205) Q Consensus 81 ~~~Dliv~~g~~~ 93 (205) .++|+++.+.... T Consensus 64 ~~~d~v~i~~~~~ 76 (125) T 3e18_A 64 EKVDAVLIATPND 76 (125) T ss_dssp TTCCEEEECSCGG T ss_pred CCCCEEEEECCCC T ss_conf 8988899946611 No 32 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:310-418) Probab=86.07 E-value=2.2 Score=22.83 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=47.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH----HHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHH Q ss_conf 6659999769850189999999739998479999976888878----8899860895-0463013233221012432100 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQG----LVKARKEKVP-TFPIPYKDYISRREHEKAILMQ 77 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~----l~~a~~~~Ip-~~~i~~~~~~~~~~~~~~l~~~ 77 (205) -||++|+ |.++-+-++.++.+ ++..+++++.|..++... .+..+..+.+ ..++...+ ..++.+. T Consensus 3 GKrv~i~--gd~~~~~~l~~~l~--ElGm~vv~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d-------~~el~~~ 71 (109) T 1mio_B 3 GKKVALL--GDPDEIIALSKFII--ELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGD-------FFDVHQW 71 (109) T ss_dssp TCEEEEE--ECHHHHHHHHHHHH--TTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCB-------HHHHHHH T ss_pred CCEEEEE--CCCHHHHHHHHHHH--HCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCC-------HHHHHHH T ss_conf 9879998--88188999999999--84990148872689777789999999865898878997999-------9999999 Q ss_pred CCCCCCEEEEEEEEEEEC Q ss_conf 012343036431122205 Q gi|254780570|r 78 LSSIQPDLICLAGYMRLL 95 (205) Q Consensus 78 l~~~~~Dliv~~g~~~il 95 (205) +++.+||+++.-.|.+.+ T Consensus 72 i~~~~pDliig~s~~~~~ 89 (109) T 1mio_B 72 IKNEGVDLLISNTYGKFI 89 (109) T ss_dssp HHHSCCSEEEESGGGHHH T ss_pred HHHCCCCEEEECCHHHHH T ss_conf 974499999979458999 No 33 >>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} (A:1-123,A:263-323) Probab=85.84 E-value=2.7 Score=22.22 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=40.0 Q ss_pred CCCEEEEEECCCCHHHH-HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 86659999769850189-99999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 2 IRKNIVIFISGEGTNML-SLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~-~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) ||.|+++. |.|+-.. .-+.+.... + ++..+++++.....-+.+++++++.+.-+ .+.+.+ T Consensus 1 MklkIaiI--G~G~ia~~~hlp~l~~~--~-~veivv~d~~~~~~~~~a~~~~i~~~~td--------------~eeLl~ 61 (184) T 1xea_A 1 MSLKIAXI--GLGDIAQKAYLPVLAQW--P-DIELVLCTRNPKVLGTLATRYRVSATCTD--------------YRDVLQ 61 (184) T ss_dssp -CEEEEEE--CCCHHHHHTHHHHHTTS--T-TEEEEEECSCHHHHHHHHHHTTCCCCCSS--------------TTGGGG T ss_pred CCEEEEEE--CCCHHHHHHHHHHHHHC--C-CCEEEEEECCHHHHHHHHHHCCCCCCCCC--------------HHHHHC T ss_conf 93189999--58899999999999829--8-96899998999999999998399843188--------------999955 Q ss_pred CCCEEEEEE Q ss_conf 343036431 Q gi|254780570|r 81 IQPDLICLA 89 (205) Q Consensus 81 ~~~Dliv~~ 89 (205) .++|+|+.+ T Consensus 62 ~~iDaV~I~ 70 (184) T 1xea_A 62 YGVDAVXIH 70 (184) T ss_dssp GCCSEEEEC T ss_pred CCCCEEEEE T ss_conf 899999960 No 34 >>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} (A:1-124) Probab=85.35 E-value=2.9 Score=22.07 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=47.0 Q ss_pred CCCCEEEEEECCC-CHHH-HHHHHHHHCCCCCCEEEEEEECCC-----------C-CHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 9866599997698-5018-999999973999847999997688-----------8-878889986089504630132332 Q gi|254780570|r 1 MIRKNIVIFISGE-GTNM-LSLIQATKKNDYPAEIVGVFSDNS-----------N-AQGLVKARKEKVPTFPIPYKDYIS 66 (205) Q Consensus 1 M~k~riavl~SG~-Gsnl-~~Il~~~~~~~~~~eI~~Visn~~-----------d-a~~l~~a~~~~Ip~~~i~~~~~~~ 66 (205) |.++|+++++||+ .|.+ ..++.. . ..++..+..+.. + ...-+.++..++|.+.++..+.. T Consensus 2 ~~~~kv~v~~SGG~DS~~~l~ll~~--~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~v~~~~~~- 75 (124) T 2d13_A 2 VGLADVAVLYSGGKDSNYALYWALK--S---GLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGEK- 75 (124) T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHH--T---TCEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--CT- T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--C---CCEEEEEEEEECCCCCCEECCCCCHHHHHHHHHHCCCCCEEEECCCCC- T ss_conf 8724199991686999999999998--5---982799999872889956054778999999998759993366246872- Q ss_pred CCCHHHHHHHHCCCCCCEEEEE Q ss_conf 2101243210001234303643 Q gi|254780570|r 67 RREHEKAILMQLSSIQPDLICL 88 (205) Q Consensus 67 ~~~~~~~l~~~l~~~~~Dliv~ 88 (205) ...-..+.+...+++.+.+++ T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~ 96 (124) T 2d13_A 76 -EKEVEDLKNVLEGLKVDGIVA 96 (124) T ss_dssp -TSHHHHHHHHHHTBCCSEEEC T ss_pred -CHHHHHHHHHHHHHCCCEEEE T ss_conf -289999999999618865998 No 35 >>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* (A:86-215) Probab=84.43 E-value=0.86 Score=25.67 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=46.6 Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCC----------CCCCCCHHHHH Q ss_conf 59999769850189999999739998479999976888878889986089504630132----------33221012432 Q gi|254780570|r 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD----------YISRREHEKAI 74 (205) Q Consensus 5 riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~----------~~~~~~~~~~l 74 (205) |++++ |.|...+.++++......++++++.+.+++...+. +-.|+|........ .....+.-.++ T Consensus 2 ~vlI~--Gag~~g~~l~~~l~~~~~g~~vvGfiDd~~~~~g~---~i~g~~Vl~~~~~~~~i~~v~ia~~~~~~~~~~~i 76 (130) T 2vt3_A 2 DVILI--GVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT---EVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQSI 76 (130) T ss_dssp CEEEE--CCSHHHHHHHHCC------CCEEEEEESCTTTTTC---EETTEEEEEGGGHHHHCSSCCEEEECSCHHHHHHH T ss_pred EEEEE--CCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCC---EECCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHH T ss_conf 39998--68889999998763248996799998088687599---95574154288999999973955998251778999 Q ss_pred HHHCCCCCCEEEEEEE Q ss_conf 1000123430364311 Q gi|254780570|r 75 LMQLSSIQPDLICLAG 90 (205) Q Consensus 75 ~~~l~~~~~Dliv~~g 90 (205) .+.+.+...++.+.-. T Consensus 77 ~~~l~~~gv~v~~~p~ 92 (130) T 2vt3_A 77 TDRLVALGIKGILNFT 92 (130) T ss_dssp HHHHHHTTCCEEEECS T ss_pred HHHHHHHCCCEEEECC T ss_conf 9999981975662237 No 36 >>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} (A:) Probab=84.35 E-value=3.2 Score=21.77 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=36.8 Q ss_pred CCCCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCCC--C----HHHHHHHHCCCCEEEEECCC Q ss_conf 9866599997698-50-189999999739998479999976888--8----78889986089504630132 Q gi|254780570|r 1 MIRKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNSN--A----QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 1 M~k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~d--a----~~l~~a~~~~Ip~~~i~~~~ 63 (205) |.++|++|++||+ .| .+..++.. . ..++.+|..+... . ..-+.|+..+++...+.... T Consensus 1 m~~~~vvv~~SGG~DS~~~l~ll~~--~---g~~v~~v~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 66 (219) T 3bl5_A 1 MKKEKAIVVFSGGQDSTTCLLWALK--E---FEEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSL 66 (219) T ss_dssp --CCEEEEECCSSHHHHHHHHHHHH--H---CSEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGG T ss_pred CCCCEEEEEECCCHHHHHHHHHHHH--C---CCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHH T ss_conf 9987399996385899999999998--3---9918999987898873799999999998499658712466 No 37 >>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} (A:1-133,A:305-362) Probab=84.30 E-value=3.2 Score=21.76 Aligned_cols=74 Identities=15% Similarity=0.014 Sum_probs=42.4 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .+.|+++++ .|.-....+.++.... +++++.|.+..+ .....+++++++|....-+. . +-+.++.. T Consensus 5 ~~irvgIIG--~G~ig~~~~~al~~~~-~~eivaI~d~~~-e~a~~~a~~~~i~~~~~~~~------s----~e~ll~d~ 70 (191) T 1ydw_A 5 TQIRIGVXG--CADIARKVSRAIHLAP-NATISGVASRSL-EKAKAFATANNYPESTKIHG------S----YESLLEDP 70 (191) T ss_dssp -CEEEEEES--CCTTHHHHHHHHHHCT-TEEEEEEECSSH-HHHHHHHHHTTCCTTCEEES------S----HHHHHHCT T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHCC-CCEEEEEECCCH-HHHHHHHHHHCCCCCCEECC------C----HHHHHCCC T ss_conf 940899994--8599999999998589-988999986999-99999999849984355338------8----99995599 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) ++|.|+.+ T Consensus 71 ~vD~V~Ia 78 (191) T 1ydw_A 71 EIDALYVP 78 (191) T ss_dssp TCCEEEEC T ss_pred CCCEEEEE T ss_conf 98889971 No 38 >>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} (A:1-122) Probab=83.93 E-value=2.7 Score=22.25 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=41.5 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 65999976985018999999973999847999997688887888998608950463013233221012432100012343 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) ||+++. |.|+-....+.+.... .+.+++.|+. +.....-+.+++++++... .+ +-+.+...++ T Consensus 1 ~kvgii--G~G~~g~~~~~~l~~~-~~~~i~av~d-~~~~~~~~~~~~~~~~~~~------~d-------~~~l~~~~~i 63 (122) T 2glx_A 1 NRWGLI--GASTIAREWVIGAIRA-TGGEVVSMMS-TSAERGAAYATENGIGKSV------TS-------VEELVGDPDV 63 (122) T ss_dssp CEEEEE--SCCHHHHHTHHHHHHH-TTCEEEEEEC-SCHHHHHHHHHHTTCSCCB------SC-------HHHHHTCTTC T ss_pred CCEEEE--CCHHHHHHHHHHHHHC-CCCEEEEEEC-CCHHHHHHHHHHHCCCCCC------CC-------HHHHHCCCCC T ss_conf 949999--9849999999999738-9978999985-9999999999980999501------89-------9999559998 Q ss_pred EEEEEEEE Q ss_conf 03643112 Q gi|254780570|r 84 DLICLAGY 91 (205) Q Consensus 84 Dliv~~g~ 91 (205) |+++.+.- T Consensus 64 d~v~i~~~ 71 (122) T 2glx_A 64 DAVYVSTT 71 (122) T ss_dssp CEEEECSC T ss_pred CEEEEECC T ss_conf 88999544 No 39 >>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A (A:146-274) Probab=83.81 E-value=3.3 Score=21.62 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=55.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCHH----HHHHHHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 6659999769850189999999739998479999976--888878----8899860895046301323322101243210 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSD--NSNAQG----LVKARKEKVPTFPIPYKDYISRREHEKAILM 76 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn--~~da~~----l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~ 76 (205) .+|+++.+.+...-+.+++..... ++.++..+... .++... .+.+++.|..+.....- -+ T Consensus 3 g~kv~~vGd~~~rv~~S~~~~~~~--~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~------------~e 68 (129) T 2i6u_A 3 GLRLSYFGDGANNMAHSLLLGGVT--AGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADA------------HA 68 (129) T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH--TTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCH------------HH T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--CCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECH------------HH T ss_conf 988999679888601468988861--6934651477323477688887777775248742898411------------10 Q ss_pred HCCCCCCEEEEEEEE-----------------EEECCCHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 001234303643112-----------------220572132106654231353223332444 Q gi|254780570|r 77 QLSSIQPDLICLAGY-----------------MRLLSRDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 77 ~l~~~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) .++ +.|+|..-.| ...+..++++..+..++=+|| ||.+||. T Consensus 69 a~~--~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~--LP~~Rg~ 126 (129) T 2i6u_A 69 AAA--GADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHC--LPAHRGD 126 (129) T ss_dssp HHT--TCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEEC--SCCCBTT T ss_pred CCC--CCEEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEECC--CCCCCCC T ss_conf 135--960999721553110110134443321202249999725999699899--9986776 No 40 >>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306) Probab=83.13 E-value=2.9 Score=22.08 Aligned_cols=106 Identities=10% Similarity=0.169 Sum_probs=53.0 Q ss_pred CCCEEEEEECCCCH-----HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHH-------------HHHC-CCCEEEEECC Q ss_conf 86659999769850-----189999999739998479999976888878889-------------9860-8950463013 Q gi|254780570|r 2 IRKNIVIFISGEGT-----NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVK-------------ARKE-KVPTFPIPYK 62 (205) Q Consensus 2 ~k~riavl~SG~Gs-----nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~-------------a~~~-~Ip~~~i~~~ 62 (205) |.|||+||.||..+ .+.++++..... ..+|.++. ..-.++-. .... |-..-.-..+ T Consensus 1 m~krI~IltsGGdaPGlNa~Ir~vv~~a~~~--g~~v~G~~---~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LgtsR~~ 75 (185) T 1pfk_A 1 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTE--GLEVMGIY---DGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFP 75 (185) T ss_dssp CCCEEEEEECSSCCTTHHHHHHHHHHHHHHT--TCEEEEES---THHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCG T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEC---CCHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCC T ss_conf 9864999865888677899999999999877--99999991---667887279868689999977985799722477888 Q ss_pred CCCCCCCHHHHHHHHCCCCCCEEEE-EEEEEEECCCHHHHCCCCCEEECCCC Q ss_conf 2332210124321000123430364-31122205721321066542313532 Q gi|254780570|r 63 DYISRREHEKAILMQLSSIQPDLIC-LAGYMRLLSRDFVESYKNKILNIHPS 113 (205) Q Consensus 63 ~~~~~~~~~~~l~~~l~~~~~Dliv-~~g~~~il~~~~l~~~~~~~iN~Hps 113 (205) .+.+++.+ +++.+.+++++.|.++ .-|-...-....+..+...++.+=-+ T Consensus 76 ~~~~~~~~-~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vvgiPkT 126 (185) T 1pfk_A 76 EFRDENIR-AVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLPGT 126 (185) T ss_dssp GGGSHHHH-HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEBC T ss_pred CCCCHHHH-HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEE T ss_conf 66657788-8999999976998899936936899999976436743312112 No 41 >>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (B:1-130,B:285-312) Probab=82.74 E-value=3.7 Score=21.34 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=42.8 Q ss_pred CCC-CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 986-6599997698501899999997399984799999768888788899860895046301323322101243210001 Q gi|254780570|r 1 MIR-KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 1 M~k-~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) |++ .|+++.+.|+ ..-..++...+.. -.++++.|++-+++......+...+.+...-.+ +.+.+.+. T Consensus 1 MskkikVgIIG~G~-~g~~~~~~~l~~~-~~~eivai~d~~~~~~~~~~~~~~~~~~~~~~~----------~d~~~~~~ 68 (158) T 1nvm_B 1 MNQKLKVAIIGSGN-IGTDLMIKVLRNA-KYLEMGAMVGIDAASDGLARAQRMGVTTTYAGV----------EGLIKLPE 68 (158) T ss_dssp CCSCEEEEEECCSH-HHHHHHHHHHHHC-SSEEEEEEECSCTTCHHHHHHHHTTCCEESSHH----------HHHHHSGG T ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCH----------HHHHCCCC T ss_conf 99887399986879-9999999998459-996899998168254266777773996545641----------12201133 Q ss_pred CCCCEEEEEE Q ss_conf 2343036431 Q gi|254780570|r 80 SIQPDLICLA 89 (205) Q Consensus 80 ~~~~Dliv~~ 89 (205) ..++|+++.+ T Consensus 69 ~~~vD~V~Ia 78 (158) T 1nvm_B 69 FADIDFVFDA 78 (158) T ss_dssp GGGEEEEEEC T ss_pred CCCCCEEEEC T ss_conf 4446889995 No 42 >>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} (A:1-125) Probab=82.55 E-value=2.7 Score=22.23 Aligned_cols=92 Identities=15% Similarity=0.241 Sum_probs=52.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 65999976985018999999973999847999997688887888998608950463013233221012432100012343 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) +|+.|+ |+|--...++.+.+ ++++++.. +..++++.+...|.+ +..++..+ .+.+.+..++.++ T Consensus 12 kkilIi--G~G~~~~~l~~~a~--~~g~~~~~-~~~~~~~~~~~~ad~----~~~~~~~d-------~~~i~~~a~~~~v 75 (125) T 1kjq_A 12 TRVMLL--GSGELGKEVAIECQ--RLGVEVIA-VDRYADAPAMHVAHR----SHVINMLD-------GDALRRVVELEKP 75 (125) T ss_dssp CEEEEE--SCSHHHHHHHHHHH--TTTCEEEE-EESSTTCGGGGGSSE----EEECCTTC-------HHHHHHHHHHHCC T ss_pred CEEEEE--CCCHHHHHHHHHHH--HCCCEEEE-EECCCCCCHHHHCCE----EEECCCCC-------HHHHHHHHHHHCC T ss_conf 899998--97899999999999--87998999-979999826762550----68717889-------9999999998399 Q ss_pred EEEEEEEEEEECCCHHHHCCCCCEEECCCC Q ss_conf 036431122205721321066542313532 Q gi|254780570|r 84 DLICLAGYMRLLSRDFVESYKNKILNIHPS 113 (205) Q Consensus 84 Dliv~~g~~~il~~~~l~~~~~~~iN~Hps 113 (205) |.|+. ||. -++..++......-+.++|| T Consensus 76 d~v~~-~~~-~~~~~~~~~l~~~gi~vgps 103 (125) T 1kjq_A 76 HYIVP-EIE-AIATDMLIQLEEEGLNVVPC 103 (125) T ss_dssp SEEEE-CSS-CSCHHHHHHHHHTTCEESSC T ss_pred CEEEC-CCC-CHHHHHHHHHHHCCCCCCCC T ss_conf 99982-776-27489999999759834898 No 43 >>1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} (A:1-143) Probab=81.32 E-value=4.1 Score=20.99 Aligned_cols=75 Identities=20% Similarity=0.033 Sum_probs=42.0 Q ss_pred CCCCEEEEEECCCCHHHHH-HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 9866599997698501899-999997399984799999768888788899860895046301323322101243210001 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLS-LIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~-Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) |-+.|++++ |.|+-... .....+...-.++++.|+.-++ ...-..+++++.+...- . +-+.+. T Consensus 16 ~~~l~v~ii--G~G~~g~~~~~~~l~~~~~~~~i~av~d~~~-~~~~~~~~~~~~~~~~~---------~----~~~ll~ 79 (143) T 1zh8_A 16 LRKIRLGIV--GCGIAARELHLPALKNLSHLFEITAVTSRTR-SHAEEFAKXVGNPAVFD---------S----YEELLE 79 (143) T ss_dssp CCCEEEEEE--CCSHHHHHTHHHHHHTTTTTEEEEEEECSSH-HHHHHHHHHHSSCEEES---------C----HHHHHH T ss_pred CCCCEEEEE--CCCHHHHHHHHHHHHHCCCCEEEEEEECCCH-HHHHHHHHHCCCCCEEC---------C----HHHHHH T ss_conf 668889999--4899999999999983899768999989999-99999999839984408---------8----999971 Q ss_pred CCCCEEEEEEEE Q ss_conf 234303643112 Q gi|254780570|r 80 SIQPDLICLAGY 91 (205) Q Consensus 80 ~~~~Dliv~~g~ 91 (205) +.++|+++.+.. T Consensus 80 ~~~id~v~i~~~ 91 (143) T 1zh8_A 80 SGLVDAVDLTLP 91 (143) T ss_dssp SSCCSEEEECCC T ss_pred CCCCCEEEECCC T ss_conf 887654642121 No 44 >>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} (A:) Probab=81.02 E-value=2 Score=23.11 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=47.3 Q ss_pred CCCCEEEEEECCCC--H-HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH Q ss_conf 98665999976985--0-18999999973999847999997688887888998608950463013233221012432100 Q gi|254780570|r 1 MIRKNIVIFISGEG--T-NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQ 77 (205) Q Consensus 1 M~k~riavl~SG~G--s-nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~ 77 (205) |.++||.+.+.||- | =+++|++....+.+.+.-.++-....+....+.+++.|++.-. ..++...+ T Consensus 1 M~~~~vlFvC~~N~~RS~mAEai~~~~~~~~~~v~SAG~~~~~~~p~~~~~l~~~gi~~~~-----~~s~~l~~------ 69 (139) T 1jl3_A 1 MENKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEAHGLNPNAVKAMKEVGIDISN-----QTSDIIDS------ 69 (139) T ss_dssp --CEEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESSCCCCCHHHHHHHHHTTCCCTT-----CCCCBCCH------ T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-----CCCCCCCH------ T ss_conf 9978799984998168999999999846365113777777877780699999971867543-----45530567------ Q ss_pred CCCCCCEEEEEEE Q ss_conf 0123430364311 Q gi|254780570|r 78 LSSIQPDLICLAG 90 (205) Q Consensus 78 l~~~~~Dliv~~g 90 (205) -.-...|+|+... T Consensus 70 ~~~~~~DlIi~m~ 82 (139) T 1jl3_A 70 DILNNADLVVTLC 82 (139) T ss_dssp HHHTTCSEEEECS T ss_pred HHHHCCCHHHHHC T ss_conf 5503020667605 No 45 >>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} (A:1-132) Probab=80.55 E-value=4.3 Score=20.82 Aligned_cols=72 Identities=14% Similarity=-0.029 Sum_probs=40.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) +.|+++. |.|+-.+..+.......-+++++.|++-++ ......+++++++...-+ ..+.+...+ T Consensus 8 ~irvgii--G~G~~~~~~~~~~~~~~~~~~ivav~d~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 71 (132) T 3cea_A 8 PLRAAII--GLGRLGERHARHLVNKIQGVKLVAACALDS-NQLEWAKNELGVETTYTN-------------YKDXIDTEN 71 (132) T ss_dssp CEEEEEE--CCSTTHHHHHHHHHHTCSSEEEEEEECSCH-HHHHHHHHTTCCSEEESC-------------HHHHHTTSC T ss_pred CCEEEEE--CCHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHCCCCCCCCC-------------HHHHHCCCC T ss_conf 8769998--882999999999986489968999983999-999999998299852599-------------999963889 Q ss_pred CEEEEEEE Q ss_conf 30364311 Q gi|254780570|r 83 PDLICLAG 90 (205) Q Consensus 83 ~Dliv~~g 90 (205) +|+++.+. T Consensus 72 ~d~v~i~t 79 (132) T 3cea_A 72 IDAIFIVA 79 (132) T ss_dssp CSEEEECS T ss_pred CCEEEECC T ss_conf 88453023 No 46 >>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} (A:1-130) Probab=80.25 E-value=3 Score=21.96 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=28.5 Q ss_pred CCCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 986659999769850-------189999999739998479999976888 Q gi|254780570|r 1 MIRKNIVIFISGEGT-------NMLSLIQATKKNDYPAEIVGVFSDNSN 42 (205) Q Consensus 1 M~k~riavl~SG~Gs-------nl~~Il~~~~~~~~~~eI~~Visn~~d 42 (205) |+|+||+||+-|..+ .+.+++++.... ++++..|.-++.. T Consensus 20 ~~k~kI~vl~GG~S~EheVSl~SA~~v~~aL~~~--~y~v~~i~i~~~g 66 (130) T 3e5n_A 20 MRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQ--RFEPVLIGIDKQG 66 (130) T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTT--TEEEEEEEECTTS T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH--CCEEEEEEECCCC T ss_conf 4667799997968874899999999999975464--8979999986899 No 47 >>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} (X:165-284) Probab=79.05 E-value=2 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=19.1 Q ss_pred ECCCHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 0572132106654231353223332444 Q gi|254780570|r 94 LLSRDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 94 il~~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) .+.+++++.-+. ++=+|| ||.+||. T Consensus 93 ~v~~~ll~~~kd-~i~mHc--LP~~Rg~ 117 (120) T 1js1_X 93 TVGDRQMAVTNN-AYFMHC--LPVRRNM 117 (120) T ss_dssp SBCHHHHTTSSS-CEEECC--SCCCBTT T ss_pred CCCHHHHCCCCC-CEEECC--CCCCCCC T ss_conf 145998747999-999799--9998887 No 48 >>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} (A:1-145,A:408-458) Probab=78.30 E-value=5.1 Score=20.35 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=37.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 98665999976985018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) |+++|++++.+|. -...++++..... ..+| .|++ +.....-..++.++.+....+..+. ..+.+.+ T Consensus 21 ~~~~kVlIIGaG~--vg~~~~~~L~~~g-~~~I-~v~d-~~~~~a~~l~~~~~~~~~~~d~~~~-------~~l~~~~-- 86 (196) T 2axq_A 21 HMGKNVLLLGSGF--VAQPVIDTLAAND-DINV-TVAC-RTLANAQALAKPSGSKAISLDVTDD-------SALDKVL-- 86 (196) T ss_dssp --CEEEEEECCST--THHHHHHHHHTST-TEEE-EEEE-SSHHHHHHHHGGGTCEEEECCTTCH-------HHHHHHH-- T ss_pred CCCCEEEEECCCH--HHHHHHHHHHHCC-CCEE-EEEE-CCHHHHHHHHCCCCCCEEEEECCCH-------HHHHHHH-- T ss_conf 5788199989888--9999999998289-9349-9996-9999999986026983699847998-------9999986-- Q ss_pred CCCEEEEEE Q ss_conf 343036431 Q gi|254780570|r 81 IQPDLICLA 89 (205) Q Consensus 81 ~~~Dliv~~ 89 (205) .++|+++.+ T Consensus 87 ~~~DiVI~~ 95 (196) T 2axq_A 87 ADNDVVISL 95 (196) T ss_dssp HTSSEEEEC T ss_pred CCCCEEEEC T ss_conf 189999999 No 49 >>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} (A:1-119,A:270-304) Probab=78.09 E-value=5.2 Score=20.31 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=27.0 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 98665999976985018999999973999847999997688 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) |.+.|+++. |.|.--+..++.+.... +++++.|+.-++ T Consensus 1 Mk~ikVgiI--G~G~iG~~~~~~l~~~~-~~eiVav~d~~~ 38 (154) T 1f06_A 1 MTNIRVAIV--GYGNLGRSVEKLIAKQP-DMDLVGIFSRRA 38 (154) T ss_dssp CCCEEEEEE--CCSHHHHHHHHHHTTCS-SEEEEEEEESSS T ss_pred CCCCEEEEE--CCCHHHHHHHHHHHHCC-CCEEEEEEECCH T ss_conf 971079998--95899999999997399-979999997776 No 50 >>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273) Probab=77.95 E-value=3 Score=21.95 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=55.4 Q ss_pred CCCEEEEEECCCCH--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 86659999769850--1899999997399984799999768888788899860895046301323322101243210001 Q gi|254780570|r 2 IRKNIVIFISGEGT--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 2 ~k~riavl~SG~Gs--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) .++.|+||=||-|. -++.|.+... ..++ ..+.|++. +|+-. +....-..+-.++.+.+. T Consensus 11 ~~~~IGIfDSGiGgLavl~~i~~~~p----~~~~-iyv~D~~~-----------~PYG~---ks~e~i~~~~~~~~~~L~ 71 (142) T 2oho_A 11 DTRPIGFLDSGVGGLTVVCELIRQLP----HEKI-VYIGDSAR-----------APYGP---RPKKQIKEYTWELVNFLL 71 (142) T ss_dssp CCCCEEEEESSSTTHHHHHHHHHHCT----TCCE-EEEECGGG-----------CCCTT---SCHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC----CCCE-EEEECCCC-----------CCCCC---CCHHHHHHHHHHHHHHHH T ss_conf 99978999789777999999999789----9999-99946889-----------99899---999999999999999998 Q ss_pred CCCCEEEEEE-EEEE-ECCCHHHHCCCCCEEECCCCCCCCCC Q ss_conf 2343036431-1222-05721321066542313532233324 Q gi|254780570|r 80 SIQPDLICLA-GYMR-LLSRDFVESYKNKILNIHPSLLPLFP 119 (205) Q Consensus 80 ~~~~Dliv~~-g~~~-il~~~~l~~~~~~~iN~HpslLP~yr 119 (205) +.++|++|.+ .-.. ..-+.+-+.++..+||+=|.--|+.| T Consensus 72 ~~g~~~IVIACNTAsa~~ld~Lr~~~~iPiI~iV~~~~~~~~ 113 (142) T 2oho_A 72 TQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVHQKAVEHR 113 (142) T ss_dssp TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHTCCCCCCE T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCEE T ss_conf 557875999615788763787764046764642358986629 No 51 >>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis tohama I, structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} (A:119-288) Probab=77.74 E-value=5.3 Score=20.24 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=46.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC-CHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 6659999769850189999999739998479999976888-878889986089504630132332210124321000123 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSN-AQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~d-a~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) ++|++|+ |.|.=.+..+++.... .+.+.+.|+.-.++ +...+.+++++.+...-+ +.+.+.+. T Consensus 3 ~~ki~iI--G~G~~g~~~~~~l~~~-~~~~~v~v~~r~~~~a~a~~~~~~~~~~~~~~~-------------~~~~~~~~ 66 (170) T 3hdj_A 3 SSVLGLF--GAGTQGAEHAAQLSAR-FALEAILVHDPYASPEILERIGRRCGVPARXAA-------------PADIAAQA 66 (170) T ss_dssp CCEEEEE--CCSHHHHHHHHHHHHH-SCCCEEEEECTTCCHHHHHHHHHHHTSCEEECC-------------HHHHHHHC T ss_pred CCEEEEE--CCCHHHHHHHHHHHHH-CCHHHHEEEHHHHHHHHHHHHHHHCCCCEEECC-------------HHHHHHHC T ss_conf 7569997--4726689999999852-554531210201119999998743597079778-------------79998637 Q ss_pred CCEEEEEEEEEEECCCHHHHCCC Q ss_conf 43036431122205721321066 Q gi|254780570|r 82 QPDLICLAGYMRLLSRDFVESYK 104 (205) Q Consensus 82 ~~Dliv~~g~~~il~~~~l~~~~ 104 (205) ++|.++.......+....+..-+ T Consensus 67 dv~~v~~~~~~~~~~~~~~~a~~ 89 (170) T 3hdj_A 67 DIVVTATRSTTPLFAGQALRAGA 89 (170) T ss_dssp SEEEECCCCSSCSSCGGGCCTTC T ss_pred CEEEEECCCCCCCCCHHCCCCCC T ss_conf 55577426799854130178877 No 52 >>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} (A:1-150) Probab=76.69 E-value=5.6 Score=20.05 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=29.3 Q ss_pred CCC-CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEE Q ss_conf 986-659999769850189999999739998479999976888878889986089504630 Q gi|254780570|r 1 MIR-KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIP 60 (205) Q Consensus 1 M~k-~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~ 60 (205) ||+ .|++++.+| |+-....+...........++.+..-+........+.....+...+. T Consensus 1 mm~~i~v~iiG~~-G~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 60 (150) T 1r0k_A 1 MSQPRTVTVLGAT-GSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIA 60 (150) T ss_dssp -CCCEEEEEETTT-SHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEES T ss_pred CCCCCEEEEECCC-CHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEEC T ss_conf 9998889998868-79889999999839677279999938989999999998399999990 No 53 >>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} (A:) Probab=76.07 E-value=4.5 Score=20.72 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=26.5 Q ss_pred CCCEEEEEECCCCHHHH--HHHHHHHCCCCCCEEEEEEECC Q ss_conf 86659999769850189--9999997399984799999768 Q gi|254780570|r 2 IRKNIVIFISGEGTNML--SLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~--~Il~~~~~~~~~~eI~~Visn~ 40 (205) |+||+.+.+||.++..+ .+++..+. .++++..|+|.. T Consensus 1 M~k~ili~itGs~~~~~~~~~i~~L~~--~~~~v~vv~t~~ 39 (181) T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ--HFDEVNILFSPS 39 (181) T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT--TSSCEEEEECGG T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHH--CCCEEEEEECHH T ss_conf 997399998508999999999999998--899699998155 No 54 >>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus subtilis} (A:1-96,A:209-272) Probab=75.73 E-value=4.7 Score=20.56 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=36.5 Q ss_pred CCCCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 98665999976985--0189999999739998479999976888878889986089504630132332210124321000 Q gi|254780570|r 1 MIRKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 1 M~k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) |++..|+||=||-| |-++.|.+.. +.+-..-+.|+. ++|+=.-+ ...-..+-.++.+.+ T Consensus 1 M~~~~IgifDSGiGGLtv~~~i~~~l-----P~e~~iy~~D~~-----------~~PYG~ks---~~~i~~~~~~~~~~l 61 (160) T 1zuw_A 1 MLEQPIGVIDSGVGGLTVAKEIMRQL-----PKENIIYVGDTK-----------RCPYGPRP---EEEVLQYTWELTNYL 61 (160) T ss_dssp CTTSCEEEEESSSTTHHHHHHHHHHS-----TTCCEEEEECGG-----------GCCCSSSC---HHHHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHC-----CCCCEEEEECCC-----------CCCCCCCC---HHHHHHHHHHHHHHH T ss_conf 99998899988976899999999978-----999889995688-----------99989899---999999999999998 Q ss_pred -CCCCCEEEEEE Q ss_conf -12343036431 Q gi|254780570|r 79 -SSIQPDLICLA 89 (205) Q Consensus 79 -~~~~~Dliv~~ 89 (205) ++++++++|.| T Consensus 62 ~~~~~~~~iViA 73 (160) T 1zuw_A 62 LENHHIKMLVIA 73 (160) T ss_dssp HHHSCCSEEEEC T ss_pred HHCCCCCEEEEC T ss_conf 633698299982 No 55 >>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:1-108) Probab=74.67 E-value=6.3 Score=19.70 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=49.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) .+|+.|+ |+|-....++.+.+. +++++.. +..++++.+...|.+ ++..++.+ .+.+.+..++.+ T Consensus 19 ~~kilIl--G~Gqla~~l~~aa~~--lG~~~~~-~d~~~~~pa~~~ad~----~~~~~~~D-------~~~i~~~a~~~~ 82 (108) T 2dwc_A 19 AQKILLL--GSGELGKEIAIEAQR--LGVEVVA-VDRYANAPAMQVAHR----SYVGNMMD-------KDFLWSVVEREK 82 (108) T ss_dssp CCEEEEE--SCSHHHHHHHHHHHH--TTCEEEE-EESSTTCHHHHHSSE----EEESCTTC-------HHHHHHHHHHHC T ss_pred CCEEEEE--CCCHHHHHHHHHHHH--CCCEEEE-EECCCCCCHHHHCCE----EEECCCCC-------HHHHHHHHHHCC T ss_conf 8899999--978999999999998--7998999-979898857774565----89789999-------999999998739 Q ss_pred CEEEEEEEEEEECCCHHHHCC Q ss_conf 303643112220572132106 Q gi|254780570|r 83 PDLICLAGYMRLLSRDFVESY 103 (205) Q Consensus 83 ~Dliv~~g~~~il~~~~l~~~ 103 (205) +|.|.. +|. -++.++++.. T Consensus 83 ~D~I~~-e~e-~i~~~~~~~~ 101 (108) T 2dwc_A 83 PDAIIP-EIE-AINLDALFEF 101 (108) T ss_dssp CSEEEE-CSS-CSCHHHHHHH T ss_pred CCEEEE-CCC-CCCHHHHHHH T ss_conf 999996-888-7578999999 No 56 >>2ef0_A Ornithine carbamoyltransferase; TTHA1199, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus HB8} (A:152-270) Probab=74.45 E-value=3.2 Score=21.73 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.2 Q ss_pred ECCCHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 0572132106654231353223332444 Q gi|254780570|r 94 LLSRDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 94 il~~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) .+.+++++..+..++=+|| ||.+||. T Consensus 91 ~vt~~~l~~a~~~aivmH~--LP~~Rg~ 116 (119) T 2ef0_A 91 QVNGELLKLLRPEGVFLHC--LPAHYGE 116 (119) T ss_dssp CBCHHHHTTSCTTCEEEEC--SCCCBTT T ss_pred CCCHHHHHHCCCCCEEECC--CCCCCCC T ss_conf 0319999717999899799--9998997 No 57 >>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} (A:1-176,A:396-479) Probab=73.59 E-value=6.7 Score=19.52 Aligned_cols=76 Identities=11% Similarity=0.009 Sum_probs=43.3 Q ss_pred CCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 665999976985--018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 3 RKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 3 k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) +.|+++.+-|++ ......+.+.....-.++|++|++.++ ....+.++++++|...+ +.+ +-+.++. T Consensus 39 pIrVgIIG~G~~g~~~~~~hl~al~~~~~~~eIvaI~d~~~-e~a~~~ae~~g~~~~~~----y~d-------~eell~~ 106 (260) T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL-KSSLQTIEQLQLKHATG----FDS-------LESFAQY 106 (260) T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH-HHHHHHHHHTTCTTCEE----ESC-------HHHHHHC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCH-HHHHHHHHHHCCCCCCC----CCC-------HHHHHCC T ss_conf 70799993798864799999999981798879999987999-99999999849897645----699-------9999649 Q ss_pred CCCEEEEEEE Q ss_conf 3430364311 Q gi|254780570|r 81 IQPDLICLAG 90 (205) Q Consensus 81 ~~~Dliv~~g 90 (205) -++|+|+.+. T Consensus 107 ~~vD~VvIaT 116 (260) T 2nvw_A 107 KDIDMIVVSV 116 (260) T ss_dssp TTCSEEEECS T ss_pred CCCCEEEEEC T ss_conf 9989899958 No 58 >>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} (B:32-62,B:311-519) Probab=73.19 E-value=6.8 Score=19.46 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=49.5 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH----HHHHC--CCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 665999976985018999999973999847999997688887888----99860--895046301323322101243210 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLV----KARKE--KVPTFPIPYKDYISRREHEKAILM 76 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~----~a~~~--~Ip~~~i~~~~~~~~~~~~~~l~~ 76 (205) .||++|. |.++-+..+.+...+ +..+++++.+...+....+ ..+.. +....++...+ ..++.+ T Consensus 81 Gkrv~I~--g~~~~~~~l~~~L~E--lGm~vv~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d-------~~e~~~ 149 (240) T 1qgu_B 81 GKKFGLY--GDPDFVMGLTRFLLE--LGCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVFINCD-------LWHFRS 149 (240) T ss_dssp TCEEEEE--SCHHHHHHHHHHHHH--TTCEEEEEEETTCCHHHHHHHHHHHHHSTTCTTCEEEESCC-------HHHHHH T ss_pred CCEEEEE--CCCHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCC-------HHHHHH T ss_conf 9779998--982889999999998--79955698637998789999999987476788877996899-------999999 Q ss_pred HCCCCCCEEEEEEEEEEECCCH Q ss_conf 0012343036431122205721 Q gi|254780570|r 77 QLSSIQPDLICLAGYMRLLSRD 98 (205) Q Consensus 77 ~l~~~~~Dliv~~g~~~il~~~ 98 (205) .+++.+|||++..++.+.+..+ T Consensus 150 ~i~~~~pDLiigss~e~~~a~~ 171 (240) T 1qgu_B 150 LMFTRQPDFMIGNSYGKFIQRD 171 (240) T ss_dssp HHHHHCCSEEEECGGGHHHHHH T ss_pred HHHHCCCCEEEECCCHHHHHHH T ss_conf 9862699999978620555465 No 59 >>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A (A:1-148,A:302-364) Probab=72.94 E-value=6.9 Score=19.42 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=41.4 Q ss_pred CCCCEEEEEECCCCH-----HHHHHHHH-HHCCCCC-CEEEEEEECCCCCHHH--------------HHHHHCCCCEEEE Q ss_conf 986659999769850-----18999999-9739998-4799999768888788--------------8998608950463 Q gi|254780570|r 1 MIRKNIVIFISGEGT-----NMLSLIQA-TKKNDYP-AEIVGVFSDNSNAQGL--------------VKARKEKVPTFPI 59 (205) Q Consensus 1 M~k~riavl~SG~Gs-----nl~~Il~~-~~~~~~~-~eI~~Visn~~da~~l--------------~~a~~~~Ip~~~i 59 (205) |.++|++|+.||.-+ .+..+++. ...+ .. .+|.+.. ..-.|+ ....-..-|--.+ T Consensus 1 M~~kni~I~~sGG~tpgiNasi~gvv~~a~~~~-~~v~~iyG~~---~G~~GLl~~~~~dl~~~~~~~~~~l~~tpGs~L 76 (211) T 3hno_A 1 MAAKNAFYAQSGGVTAVINASAAGVIEAARKQS-GKIGRIYAGR---NGIIGALTEDLIDTGQESDAAISALRYTPSGAF 76 (211) T ss_dssp -CCCEEEEEECSSCCSSHHHHHHHHHHHHHHHC-SSCCCEEEET---TTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTT T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEEEC---CCCHHHHCCCCEECCCCCHHHHHHHCCCCCCCC T ss_conf 997648998888825889799999999999839-9487997673---582235548837786024777877525797645 Q ss_pred E---CC---CCCCCCCHHHHHHHHCCCCCCEEEEEEE Q ss_conf 0---13---2332210124321000123430364311 Q gi|254780570|r 60 P---YK---DYISRREHEKAILMQLSSIQPDLICLAG 90 (205) Q Consensus 60 ~---~~---~~~~~~~~~~~l~~~l~~~~~Dliv~~g 90 (205) - .+ ...+++.+ +++++.+++++.|.++..| T Consensus 77 GS~R~kl~~~~~~~~~~-~~i~~~l~k~~I~~li~IG 112 (211) T 3hno_A 77 GSCRYKLKSLEQNRREY-ERLIEVFKAHDIGYFFYNG 112 (211) T ss_dssp CCCCCC------CHHHH-HHHHHHHHHTTEEEEEEEE T ss_pred CCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCEEEEEC T ss_conf 77788877653235799-9999999982998799972 No 60 >>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation, structural genomics, PSI 2, protein structure initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A (A:1-123) Probab=72.72 E-value=7 Score=19.39 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=39.7 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 65999976985018999999973999847999997688887888998608950463013233221012432100012343 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) .|+++. |.|.-....+.+..... +.+++.|++.+ ....-+.++.++++.+.- ..+.+.+.++ T Consensus 2 ikv~ii--G~G~~g~~~~~~l~~~~-~~~i~av~d~~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 63 (123) T 2ho3_A 2 LKLGVI--GTGAISHHFIEAAHTSG-EYQLVAIYSRK-LETAATFASRYQNIQLFD--------------QLEVFFKSSF 63 (123) T ss_dssp EEEEEE--CCSHHHHHHHHHHHHTT-SEEEEEEECSS-HHHHHHHGGGSSSCEEES--------------CHHHHHTSSC T ss_pred CEEEEE--CCCHHHHHHHHHHHHCC-CCEEEEEECCC-HHHHHHHHHHCCCCCCCC--------------HHHHHHCCCC T ss_conf 199999--98499999999998688-91899998899-999999999849985368--------------7999847999 Q ss_pred EEEEEEE Q ss_conf 0364311 Q gi|254780570|r 84 DLICLAG 90 (205) Q Consensus 84 Dliv~~g 90 (205) |+++.+. T Consensus 64 d~v~i~t 70 (123) T 2ho3_A 64 DLVYIAS 70 (123) T ss_dssp SEEEECS T ss_pred CEEECCC T ss_conf 8000023 No 61 >>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} (A:1-126,A:262-319) Probab=72.17 E-value=7.2 Score=19.30 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=32.7 Q ss_pred CCCCEEEEEECCCCHHHHH-HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEE Q ss_conf 9866599997698501899-99999739998479999976888878889986089504 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLS-LIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTF 57 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~-Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~ 57 (205) |-|.|+++. |-|+-... .+.+.+.. -+.+++++++.+++ .+...++++++|++ T Consensus 3 mkkiRVgiI--GlG~ia~~~~l~~L~~~-~~~~ivgi~d~~~e-ka~~~~~~~~i~~~ 56 (184) T 1tlt_A 3 LKKLRIGVV--GLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRA-KALPICESWRIPYA 56 (184) T ss_dssp --CEEEEEE--CCSTHHHHTHHHHHHSC-SSEEEEEEECSSCT-THHHHHHHHTCCBC T ss_pred CCCCEEEEE--ECCHHHHHHHHHHHHHC-CCCEEEEEECCCHH-HHHHHHHHHCCCCC T ss_conf 878889999--59999999999999838-99689999879999-99999998199834 No 62 >>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3btu_A (A:1-156,A:361-438) Probab=72.10 E-value=7.2 Score=19.29 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=42.0 Q ss_pred CCCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 866599997698-50-1899999997399984799999768888788899860895046301323322101243210001 Q gi|254780570|r 2 IRKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 2 ~k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) .+.|+++.+.|+ |+ -....+.+.....-.++++.|+. +....+.+.+++++++...+ +.+ +-+.++ T Consensus 19 ~plRVgiIG~G~~g~~~~~~hl~al~~~~~~~eIvaV~D-~~~e~a~~~a~~~gi~~~~~----~td-------~eell~ 86 (234) T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYS-PKIETSIATIQRLKLSNATA----FPT-------LESFAS 86 (234) T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEEC-SSHHHHHHHHHHTTCTTCEE----ESS-------HHHHHH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEC-CCHHHHHHHHHHHCCCCCEE----CCC-------HHHHHC T ss_conf 983799993686443899999999985699828999986-99999999999848998703----599-------999955 Q ss_pred CCCCEEEEEE Q ss_conf 2343036431 Q gi|254780570|r 80 SIQPDLICLA 89 (205) Q Consensus 80 ~~~~Dliv~~ 89 (205) ..++|+++.+ T Consensus 87 ~~~vD~VvI~ 96 (234) T 3btv_A 87 SSTIDMIVIA 96 (234) T ss_dssp CSSCSEEEEC T ss_pred CCCCCEEEEE T ss_conf 9999899993 No 63 >>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (A:1-46,A:286-533) Probab=72.05 E-value=2.1 Score=22.96 Aligned_cols=81 Identities=7% Similarity=0.033 Sum_probs=43.3 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 65999976985018999999973999847999997688887888998608950463013233221012432100012343 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) ||++|+ |.|+-.-.+.+... ++..+++++.|.......-++.+...-...++...+. .++.+.+...+| T Consensus 97 Krv~I~--~~~~~a~~l~~~L~--ELGmevv~~~~~~~~~~~~e~~~~l~~~~~i~~~~d~-------~ei~~~i~~~~p 165 (294) T 1mio_A 97 KTACLY--VGGSRSHTYMNMLK--SFGVDSLVAGFEFAHRDDYEGREVIPTIKIDADSKNI-------PEITVTPDEQKY 165 (294) T ss_dssp CEEEEE--ESSSHHHHHHHHHH--HHTCEEEEEEESSCCHHHHHCGGGTTTCCCCSSCCCC-------CCCCCCCCSSSC T ss_pred CEEEEE--CCCHHHHHHHHHHH--HCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCC-------CCCCCCCCCHHC T ss_conf 779997--78547999999999--8699699863111452145433102210000012342-------100145420000 Q ss_pred EEEEEEEEEEEC Q ss_conf 036431122205 Q gi|254780570|r 84 DLICLAGYMRLL 95 (205) Q Consensus 84 Dliv~~g~~~il 95 (205) ||++.-++.+-+ T Consensus 166 dLiig~~~e~~l 177 (294) T 1mio_A 166 RVVIPEDKVEEL 177 (294) T ss_dssp CCSSCTHHHHHH T ss_pred CCCCCHHHHHHH T ss_conf 234404556666 No 64 >>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} (A:1-127) Probab=71.91 E-value=7.3 Score=19.26 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=38.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) +.|+++...|+ -....+.+.... .+++++.|++.+++ ..-..+++++.+... .+ +-+.+...+ T Consensus 4 ~irv~iiG~G~--~g~~~~~~l~~~-~~~~iv~v~d~~~~-~~~~~~~~~~~~~~~------~~-------~~~~~~~~~ 66 (127) T 2p2s_A 4 KIRFAAIGLAH--NHIYDXCQQLID-AGAELAGVFESDSD-NRAKFTSLFPSVPFA------AS-------AEQLITDAS 66 (127) T ss_dssp CCEEEEECCSS--THHHHHHHHHHH-TTCEEEEEECSCTT-SCHHHHHHSTTCCBC------SC-------HHHHHTCTT T ss_pred CCEEEEECCCH--HHHHHHHHHHHC-CCCEEEEEECCCHH-HHHHHHHHCCCCCEE------CC-------HHHHHCCCC T ss_conf 07799990888--899999998751-89889999899999-999999877998568------98-------999954999 Q ss_pred CEEEEEEE Q ss_conf 30364311 Q gi|254780570|r 83 PDLICLAG 90 (205) Q Consensus 83 ~Dliv~~g 90 (205) +|+++.+. T Consensus 67 ~d~v~i~t 74 (127) T 2p2s_A 67 IDLIACAV 74 (127) T ss_dssp CCEEEECS T ss_pred CCEEEEEC T ss_conf 89899842 No 65 >>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A (A:1-125) Probab=70.73 E-value=7.7 Score=19.09 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=41.5 Q ss_pred CCEEEEEECCC-CHH-HHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 66599997698-501-8999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 3 RKNIVIFISGE-GTN-MLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 3 k~riavl~SG~-Gsn-l~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) ..|+++.+.|. |+. +..++ ...-.++++.|++.++ ...-..+++++++..+- + +-+.+.+ T Consensus 2 ~iri~iiG~G~~g~~~~~~~~----~~~~~~~lvai~d~~~-~~~~~~~~~~~~~~~~~------~-------~~~l~~~ 63 (125) T 3i23_A 2 TVKXGFIGFGKSANRYHLPYV----XIRETLEVKTIFDLHV-NEKAAAPFKEKGVNFTA------D-------LNELLTD 63 (125) T ss_dssp CEEEEEECCSHHHHHTTHHHH----TTCTTEEEEEEECTTC-CHHHHHHHHTTTCEEES------C-------THHHHSC T ss_pred CEEEEEECCCHHHHHHHHHHH----HCCCCCEEEEEEECCH-HHHHHHHHHCCCCCEEC------C-------HHHHHCC T ss_conf 315999989399999999999----6198978999990999-99999985548993569------9-------9999659 Q ss_pred CCCEEEEEEEE Q ss_conf 34303643112 Q gi|254780570|r 81 IQPDLICLAGY 91 (205) Q Consensus 81 ~~~Dliv~~g~ 91 (205) .++|+++.+.. T Consensus 64 ~~~d~v~i~t~ 74 (125) T 3i23_A 64 PEIELITICTP 74 (125) T ss_dssp TTCCEEEECSC T ss_pred CCCCEEEECCC T ss_conf 99888998788 No 66 >>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8} (A:58-227) Probab=70.50 E-value=5.8 Score=19.96 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=6.4 Q ss_pred CEEECCCCCCCCC Q ss_conf 4231353223332 Q gi|254780570|r 106 KILNIHPSLLPLF 118 (205) Q Consensus 106 ~~iN~HpslLP~y 118 (205) +++.++++.=|+| T Consensus 142 ~~~~~~~~vGgR~ 154 (170) T 2q8n_A 142 RSLEVPPGVGGRF 154 (170) T ss_dssp EEEECCTTCCGGG T ss_pred HHHHCCCCCCCHH T ss_conf 7763355444101 No 67 >>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, thermus themophilus; HET: NAD; 2.16A {Thermus thermophilus HB8} (A:78-188) Probab=70.48 E-value=2.2 Score=22.81 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=38.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) +.|+++. |.|.-...++++.+.. -++++++|+..+++.. ...++.++++.+ .+ .+.+...+ T Consensus 3 ~irv~ii--G~G~~g~~~~~~l~~~-~~~~i~av~d~~~~~~-~~~~~~~~~~~~-------~~--------~~~~~~~~ 63 (111) T 2dt5_A 3 KWGLCIV--GMGRLGSALADYPGFG-ESFELRGFFDVDPEKV-GRPVRGGVIEHV-------DL--------LPQRVPGR 63 (111) T ss_dssp CEEEEEE--CCSHHHHHHHHCSCCC-SSEEEEEEEESCTTTT-TCEETTEEEEEG-------GG--------HHHHSTTT T ss_pred CCEEEEE--CCCHHHHHHHHHHHHC-CCCEEEEEECCCHHHC-CCEECCEEECCH-------HH--------HHHHHHHC T ss_conf 8439998--8888999999857644-6935999984996881-987798896145-------88--------99999827 Q ss_pred CEEEEEE Q ss_conf 3036431 Q gi|254780570|r 83 PDLICLA 89 (205) Q Consensus 83 ~Dliv~~ 89 (205) +|+++.+ T Consensus 64 ~D~v~i~ 70 (111) T 2dt5_A 64 IEIALLT 70 (111) T ss_dssp CCEEEEC T ss_pred CCEEEEE T ss_conf 7099981 No 68 >>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii OT3} (A:) Probab=69.53 E-value=8.2 Score=18.92 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=36.3 Q ss_pred CCEEEEEECCCCHHHHHHHH-HHHCCCCCCEEEEEEECCCCCHHHHHHH---HCCCCEEEEECC Q ss_conf 66599997698501899999-9973999847999997688887888998---608950463013 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQ-ATKKNDYPAEIVGVFSDNSNAQGLVKAR---KEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~-~~~~~~~~~eI~~Visn~~da~~l~~a~---~~~Ip~~~i~~~ 62 (205) +..-.||.-|+.+.++.++. +.++++ +.++. |.-.+|...|...|+ +.|||+..++-. T Consensus 108 ~~~~~ILT~~~S~~V~~~l~~a~~~~~-~~~v~-V~EsrP~~eG~~la~~L~~~gi~vt~i~ds 169 (276) T 1vb5_A 108 DDGDVIITHSFSSTVLEIIRTAKERKK-RFKVI-LTESSPDYEGLHLARELEFSGIEFEVITDA 169 (276) T ss_dssp CTTEEEECCSCCHHHHHHHHHHHHTTC-CEEEE-EECCTTTTHHHHHHHHHHHTTCCEEEECGG T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCC-CEEEE-EECCCCCCCCHHHHHHHHHCCCCEEEECHH T ss_conf 999889971833899999999998799-66999-973776556589999999719833895556 No 69 >>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} (A:183-413) Probab=69.12 E-value=8.4 Score=18.86 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=33.5 Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEECCC---CC----HHHHHHHHCCCCEEEEECC Q ss_conf 66599997698-5018999999973999847999997688---88----7888998608950463013 Q gi|254780570|r 3 RKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSDNS---NA----QGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn~~---da----~~l~~a~~~~Ip~~~i~~~ 62 (205) .+|++|++||+ .|.+.+.+ +.+ ...++.++..|.. .. ...+.|+..+++.+.++.. T Consensus 5 ~~kvvv~~SGG~DS~~ll~l-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~ 68 (231) T 2c5s_A 5 GGKVMVLLSGGIDSPVAAYL-TMK---RGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLH 68 (231) T ss_dssp TEEEEEECCSSSHHHHHHHH-HHH---BTEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEE T ss_pred CCCEEEEECCCCHHHHHHHH-HHH---CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 88289993578639999999-997---49977999997899898789999999999839971556557 No 70 >>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.00A {Pyrococcus horikoshii OT3} (A:1-140,A:301-334) Probab=68.98 E-value=8.4 Score=18.84 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=36.9 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEE Q ss_conf 8665999976985018999999973999847999997688887888998608950463 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPI 59 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i 59 (205) ||-|++|. |.|+--+.++++..+.. +.+++.|..-.|+ .....+...+.+.+.- T Consensus 1 M~IkVgI~--G~GrIGr~~~ra~~~~~-d~eiVaV~d~~p~-~~~~~a~~~~~~~~~~ 54 (174) T 2czc_A 1 MKVKVGVN--GYGTIGKRVAYAVTKQD-DMELIGITKTKPD-FEAYRAKELGIPVYAA 54 (174) T ss_dssp CCEEEEEE--CCSHHHHHHHHHHHTCT-TEEEEEEEESSCS-HHHHHHHHTTCCEEES T ss_pred CCEEEEEE--CCHHHHHHHHHHHHHCC-CCEEEEEECCCHH-HHHHHHCCCCEEEEEC T ss_conf 97589998--98088999999995389-9689999689869-9999862075669945 No 71 >>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} (A:1-159,A:379-433) Probab=68.54 E-value=2.3 Score=22.70 Aligned_cols=150 Identities=15% Similarity=0.064 Sum_probs=65.6 Q ss_pred CCCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 866599997698-5018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 2 IRKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 2 ~k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) +++||+|++.|+ |+.+..++.. ..........++. ..++ ....++..++++..... +...++ +++..+. T Consensus 12 ~~~rIvIIGaG~iG~~~l~lL~r--~~~~~~~~i~~~d-~~~a-~~~~~~~~g~~~~~~~v----d~~n~~-~ll~~l~- 81 (214) T 2ph5_A 12 FKNRFVILGFGCVGQALXPLIFE--KFDIKPSQVTIIA-AEGT-KVDVAQQYGVSFKLQQI----TPQNYL-EVIGSTL- 81 (214) T ss_dssp CCSCEEEECCSHHHHHHHHHHHH--HBCCCGGGEEEEE-SSCC-SCCHHHHHTCEEEECCC----CTTTHH-HHTGGGC- T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCCCCCEEEEEC-CCHH-HHHHHHHCCCCEEEEEC----CHHHHH-HHHHHHH- T ss_conf 07988998988869999999985--5378874599973-7767-79888743994488634----878899-9999974- Q ss_pred CCCEEEEEEEEEEECCCHHHHC---CCCCEEEC----------CCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCC Q ss_conf 3430364311222057213210---66542313----------5322333244421210000246534453033123218 Q gi|254780570|r 81 IQPDLICLAGYMRLLSRDFVES---YKNKILNI----------HPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMD 147 (205) Q Consensus 81 ~~~Dliv~~g~~~il~~~~l~~---~~~~~iN~----------HpslLP~yrG~~~~~~ai~~g~~~~G~TiH~v~~~~D 147 (205) -+.|++|.+.. ...+.+++.. .....+++ +++.-|..|......+.+....+..|+|+- .. T Consensus 82 ~~~DvVVn~s~-~~~~~~i~~ac~eaGv~YiDt~~e~~~~~~~~~~~~~~~rs~y~l~~~l~~~ak~~G~tAv-----~~ 155 (214) T 2ph5_A 82 EENDFLIDVSI-GISSLALIILCNQKGALYINAATEPWKEEFVXEKXALNRRTNYSLREEVLRLKDKTQKTAL-----IT 155 (214) T ss_dssp CTTCEEEECCS-SSCHHHHHHHHHHHTCEEEESSCCCCCC----------CCCHHHHHHHHHTTTTTCCSCEE-----CS T ss_pred CCCCEEEECCC-CCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE-----EC T ss_conf 47998998985-1057999999998499667754355687545566874455469999999986530487477-----55 Q ss_pred CCCEEEEEEEECCCCCCHHHH Q ss_conf 662677899871899899999 Q gi|254780570|r 148 EGPIIAQAAVPVSSQDTESSL 168 (205) Q Consensus 148 ~G~Ii~q~~~~i~~~d~~~~l 168 (205) .|-=|. +.-++-|.-|+.+| T Consensus 156 ~Gan~~-~~r~~~~~~~at~~ 175 (214) T 2ph5_A 156 HGANIQ-EARQIAPYNNATSL 175 (214) T ss_dssp CBTTHH-HHHHHCSSCCHHHH T ss_pred CCCCHH-HHHHHCCCCCCCHH T ss_conf 889979-99966688886550 No 72 >>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} (A:153-280) Probab=67.93 E-value=8.3 Score=18.89 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=52.5 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEEC--CCCCHH----HHHHHHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 665999976985-0189999999739998479999976--888878----889986089504630132332210124321 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSD--NSNAQG----LVKARKEKVPTFPIPYKDYISRREHEKAIL 75 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn--~~da~~----l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~ 75 (205) .+|+++. |.. .-+.+++.+... ++.++..+.-. .++... -+.+++.|......+. +- T Consensus 3 g~kia~v--Gd~~rv~~Sl~~~ls~--~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~~------------~~ 66 (128) T 1pvv_A 3 GVKVVYV--GDGNNVAHSLMIAGTK--LGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHD------------PV 66 (128) T ss_dssp TCEEEEE--SCCCHHHHHHHHHHHH--TTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESC------------HH T ss_pred CCEEEEE--CCCCCCHHHHHHHHHH--HCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECC------------HH T ss_conf 7579997--7887526779999997--157689988986578789999999977751984999769------------99 Q ss_pred HHCCCCCCEEEEEEEE-----------------EEECCCHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 0001234303643112-----------------220572132106654231353223332444 Q gi|254780570|r 76 MQLSSIQPDLICLAGY-----------------MRLLSRDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 76 ~~l~~~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) +.++ +.|+|..-.| ...+..++++..+..++=+|| ||.+||. T Consensus 67 eai~--~aDviyt~~w~~~~~~~~~~~~~~~~~~y~i~~~~l~~~~~d~~vmH~--LP~~r~~ 125 (128) T 1pvv_A 67 KAVK--DADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHC--LPAHRGE 125 (128) T ss_dssp HHTT--TCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEEC--SCCCBTT T ss_pred HHHC--CCCEEEEHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCEEECC--CCCCCCC T ss_conf 9854--799994328886356111599998776267359999527999899899--9987886 No 73 >>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} (A:1-115,A:228-286) Probab=67.76 E-value=8.9 Score=18.68 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=38.8 Q ss_pred CCCCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 98665999976985--0189999999739998479999976888878889986089504630132332210124321000 Q gi|254780570|r 1 MIRKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 1 M~k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) ++++.|.+|-||=| |.++.+.+.. +.+-..-+.|++. +|+-.-+. ..-.++-.++.+.| T Consensus 20 ~~~~~IgifdsG~Ggltv~~~i~~~l-----p~~~~iy~~D~~~-----------~Pyg~~s~---~~i~~~~~~~~~~L 80 (174) T 2jfq_A 20 HMNKPIGVIDSGVGGLTVAKEIMRQL-----PNETIYYLGDIGR-----------CPYGPRPG---EQVKQYTVEIARKL 80 (174) T ss_dssp -CCSCEEEEESSSTTHHHHHHHHHHC-----TTCCEEEEECTTT-----------CCCTTSCH---HHHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHC-----CCCCEEEEECCCC-----------CCCCCCCH---HHHHHHHHHHHHHH T ss_conf 57998899968977799999999978-----9999899944888-----------98888999---99999999999999 Q ss_pred CCCCCEEEEEE Q ss_conf 12343036431 Q gi|254780570|r 79 SSIQPDLICLA 89 (205) Q Consensus 79 ~~~~~Dliv~~ 89 (205) .+.+++++|.+ T Consensus 81 ~~~g~~~ivia 91 (174) T 2jfq_A 81 MEFDIKMLVIA 91 (174) T ss_dssp TTSCCSEEEEC T ss_pred HHCCCCEEEEE T ss_conf 85488779981 No 74 >>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} (A:) Probab=66.51 E-value=7.4 Score=19.23 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=36.1 Q ss_pred CCCCEEEEEECCCC-H--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEE Q ss_conf 98665999976985-0--189999999739998479999976888878889986089504 Q gi|254780570|r 1 MIRKNIVIFISGEG-T--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTF 57 (205) Q Consensus 1 M~k~riavl~SG~G-s--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~ 57 (205) |.++||.+.+.||- . =+++|++....+...+...+.-....+....+..+++|++.- T Consensus 1 M~~~~vlFVc~~N~~RS~mAEai~~~~~~~~~~~~Sag~~~~~~~~~~~~~l~~~gi~~~ 60 (131) T 1jf8_A 1 MDKKTIYFISTGNSARSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDIS 60 (131) T ss_dssp -CCEEEEEEESSSSSHHHHHHHHHHHHSTTTEEEEEEESSCCCCCHHHHHHHHHTTCCCT T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 998879999498835999999999973889689854664456888067887651487555 No 75 >>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* (A:1-152,A:366-444) Probab=66.36 E-value=9.5 Score=18.49 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=42.3 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC--CHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 986659999769850189999999739998479999976888--878889986089504630132332210124321000 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSN--AQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~d--a~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) |-+.|+++. |-|.--...+.++.... .++|+.|+.-++. ....+++++.+.|.-....+ . +....+.+ T Consensus 18 ~~~iRVgiI--G~G~rG~~~i~~~~~~~-g~eIvAicD~~~~~~~~a~~~~~~~g~~~~~~y~~---~----~~d~~ell 87 (231) T 2ixa_A 18 PKKVRIAFI--AVGLRGQTHVENMARRD-DVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN---G----NDDYKNML 87 (231) T ss_dssp -CCEEEEEE--CCSHHHHHHHHHHHTCT-TEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS---S----TTTHHHHT T ss_pred CCCCEEEEE--CCCHHHHHHHHHHHCCC-CCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC---C----CCCHHHHH T ss_conf 987789998--68399999999997089-95899998588889999999999838863100155---4----46699995 Q ss_pred CCCCCEEEEEEE Q ss_conf 123430364311 Q gi|254780570|r 79 SSIQPDLICLAG 90 (205) Q Consensus 79 ~~~~~Dliv~~g 90 (205) +.-++|+|+.+. T Consensus 88 ~~~~iD~V~IaT 99 (231) T 2ixa_A 88 KDKNIDAVFVSS 99 (231) T ss_dssp TCTTCCEEEECC T ss_pred CCCCCCEEEEEC T ss_conf 388989899915 No 76 >>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A (A:1-137,A:210-451) Probab=66.30 E-value=7.7 Score=19.11 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=36.9 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .++|+.|+ |+|.-..+|..++.+.. .+..|.+.. +..+...+.+ ...++..+. +++++..++. T Consensus 20 ~~~kvLi~--g~g~~e~ai~~~~~~~~---~~~~~~~~~-~~~~~~~~~~----~~~~~~~d~-------~~i~~~a~~~ 82 (379) T 2yrx_A 20 SHMNVLVI--GRGGREHAIAWKAAQSP---LVGKLYVAP-GNPGIADVAE----LVHIDELDI-------EALVQFAKQQ 82 (379) T ss_dssp SSEEEEEE--ECSHHHHHHHHHHHTCT---TEEEEEEEE-CCTTGGGTSE----ECCCCTTCH-------HHHHHHHHHT T ss_pred HCCEEEEE--CCCHHHHHHHHHHHHCC---CCCEEEEEC-CCHHHHHCCE----EEECCCCCH-------HHHHHHHHHH T ss_conf 09789999--97889999999997299---988899989-9878874082----775388999-------9999999995 Q ss_pred CCEEEEEEEEEEECCCHHHH Q ss_conf 43036431122205721321 Q gi|254780570|r 82 QPDLICLAGYMRLLSRDFVE 101 (205) Q Consensus 82 ~~Dliv~~g~~~il~~~~l~ 101 (205) ++|.++. ||...+-..+.+ T Consensus 83 ~id~v~~-g~~~~~~~~~~~ 101 (379) T 2yrx_A 83 AIDLTIV-GPEAPLASGIVD 101 (379) T ss_dssp TCSEEEE-CSHHHHHTTHHH T ss_pred CCCEEEE-CCCHHHHHHHHH T ss_conf 9999998-984688878999 No 77 >>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis; 2.10A {Gloeobacter violaceus pcc 7421} (A:155-282) Probab=66.20 E-value=9.5 Score=18.47 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=51.8 Q ss_pred CCEEEEEECCCCH-HHHHHHHHHHCCCCCCEEEEEEEC--CCCCHHHH----HHHHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 6659999769850-189999999739998479999976--88887888----9986089504630132332210124321 Q gi|254780570|r 3 RKNIVIFISGEGT-NMLSLIQATKKNDYPAEIVGVFSD--NSNAQGLV----KARKEKVPTFPIPYKDYISRREHEKAIL 75 (205) Q Consensus 3 k~riavl~SG~Gs-nl~~Il~~~~~~~~~~eI~~Visn--~~da~~l~----~a~~~~Ip~~~i~~~~~~~~~~~~~~l~ 75 (205) .+|+++. |.++ -+.+++..... ++.++.++--. .++....+ .+++.|..+...+. +. T Consensus 3 g~ki~~v--Gd~~~v~~S~~~~~~~--~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d------------~~ 66 (128) T 3gd5_A 3 GLKLAYV--GDGNNVAHSLLLGCAK--VGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRD------------PF 66 (128) T ss_dssp TCEEEEE--SCCCHHHHHHHHHHHH--HTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESC------------HH T ss_pred CCEEEEE--CCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC------------HH T ss_conf 9769996--4630266799999985--598638840234688788999987655315871133578------------99 Q ss_pred HHCCCCCCEEEEEEEE-----------------EEECCCHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 0001234303643112-----------------220572132106654231353223332444 Q gi|254780570|r 76 MQLSSIQPDLICLAGY-----------------MRLLSRDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 76 ~~l~~~~~Dliv~~g~-----------------~~il~~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) +.++ +.|+|..-.| ...+.+++++..+..++=+|| ||.+||. T Consensus 67 eav~--~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mH~--LP~~R~~ 125 (128) T 3gd5_A 67 EAAR--GAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHC--LPAHRGE 125 (128) T ss_dssp HHHT--TCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEEC--SCCCBTT T ss_pred HHHH--CCCEEEHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEECC--CCCCCCC T ss_conf 9971--676000135666300021257888765520339999605999799898--9998884 No 78 >>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} (A:1-146,A:339-358) Probab=66.02 E-value=7.4 Score=19.23 Aligned_cols=128 Identities=13% Similarity=0.010 Sum_probs=53.2 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCC--CCEEEEEEECCCCCHH-----------HHHHHHCCCCEEEEECCCCCCC Q ss_conf 98665999976985018999999973999--8479999976888878-----------8899860895046301323322 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDY--PAEIVGVFSDNSNAQG-----------LVKARKEKVPTFPIPYKDYISR 67 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~--~~eI~~Visn~~da~~-----------l~~a~~~~Ip~~~i~~~~~~~~ 67 (205) |-+.|++++ |.|+--...++....... ..+++++.. ...... -...+..... ... T Consensus 2 mk~irvgii--G~G~iG~~~l~~l~~~~~~~~~~~vai~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 69 (166) T 1ebf_A 2 TKVVNVAVI--GAGVVGSAFLDQLLAMKSTITYNLVLLAE-AERSLISKDFSPLNVGSDWKAALAAST---------TKT 69 (166) T ss_dssp CSEEEEEEE--CCSHHHHHHHHHHHHCCCSSEEEEEEEEC-SSBEEECSSCSCCSCTTCHHHHHHTCC---------CBC T ss_pred CCEEEEEEE--CCCHHHHHHHHHHHHHHHHCCCCEEEEEE-EEEEEECCCCCCCCCCHHHHHHHHCCC---------CCC T ss_conf 867989998--66889999999999735550633899999-889999787886320035777641145---------667 Q ss_pred CCHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCC--CCCHHCCCCCCCCCCEEEEC Q ss_conf 10124321000123430364311222057213210665423135322333244421--21000024653445303312 Q gi|254780570|r 68 REHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT--HRRVLQSGIKITGCTVHMVT 143 (205) Q Consensus 68 ~~~~~~l~~~l~~~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~--~~~ai~~g~~~~G~TiH~v~ 143 (205) ......+.+.+.+.++|+++.+.=..--.+.+....+. +.|--...+=+-... ..+.+..-.++.|+++++.. T Consensus 70 ~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~---GkhV~~~~eKP~a~~~~~~~~L~~~a~~~g~~~~~~~ 144 (166) T 1ebf_A 70 LPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVEN---GISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEAT 144 (166) T ss_dssp CCHHHHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHT---TCEEECCCCGGGSSCHHHHHHHTCCCTTCCCEECGGG T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEECHHHCCCCHHHHHHHHHHHCCCEEEEEEEE T ss_conf 64466799984399971999889986799999999977---9868850305404478899999975356569999644 No 79 >>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics, protein structure initiative; 2.75A {Pyrococcus horikoshii} (A:1-110,A:246-318) Probab=65.76 E-value=9.7 Score=18.42 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=20.2 Q ss_pred CCCCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 98665999976985--018999999973999847999997688 Q gi|254780570|r 1 MIRKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 1 M~k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) ||++||+|..+|.+ +.+..|.+ .....+|+ ||+.++ T Consensus 1 m~~~kIvIIGgG~aGl~~A~~Lr~----~~~~~~It-vie~~~ 38 (183) T 3kd9_A 1 MSLKKVVIIGGGAAGMSAASRVKR----LKPEWDVK-VFEATE 38 (183) T ss_dssp -CCCEEEEECCSHHHHHHHHHHHH----HCTTSEEE-EECSSS T ss_pred CCCCEEEEECCCHHHHHHHHHHHC----CCCCCCEE-EEECCC T ss_conf 998809998988999999999980----69898389-993887 No 80 >>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} (A:165-294) Probab=65.53 E-value=9.8 Score=18.39 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=52.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCHHHH----HHHHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 6659999769850189999999739998479999976--88887888----99860895046301323322101243210 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSD--NSNAQGLV----KARKEKVPTFPIPYKDYISRREHEKAILM 76 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn--~~da~~l~----~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~ 76 (205) ++|+++..-+.+.-+.+++..... ++.++.++--. .++...++ .|++.|..+...+. +-+ T Consensus 3 glkia~vGD~~~rv~~S~~~~~~~--~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d------------~~e 68 (130) T 1vlv_A 3 GVKVVFMGDTRNNVATSLMIACAK--MGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSN------------LEE 68 (130) T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH--TTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESC------------HHH T ss_pred CCCEEEECCCCCEEEEHHHHHHHH--CCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC------------HHH T ss_conf 455146415555064137889987--698499996113235423454454420012355334359------------999 Q ss_pred HCCCCCCEEEEEEEE--E---------------EECCCHHHHC-CCCCEEECCCCCCCCCCCC Q ss_conf 001234303643112--2---------------2057213210-6654231353223332444 Q gi|254780570|r 77 QLSSIQPDLICLAGY--M---------------RLLSRDFVES-YKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 77 ~l~~~~~Dliv~~g~--~---------------~il~~~~l~~-~~~~~iN~HpslLP~yrG~ 121 (205) .++ +.|+|..-.| | ..+..++++. .+..++=+|| ||.+||. T Consensus 69 av~--~aDviytd~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~ivmHc--LP~~r~~ 127 (130) T 1vlv_A 69 ALA--GADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHC--LPAVKGQ 127 (130) T ss_dssp HHT--TCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEEC--SCCCBTT T ss_pred HHH--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHCCCCCCEEECC--CCCCCCC T ss_conf 983--4664554466541134666988876247335699997318999899797--8589987 No 81 >>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidoreductase; HET: FAD; 2.54A {Bacillus SP} (1:) Probab=65.08 E-value=9.4 Score=18.51 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=25.5 Q ss_pred CCCEEEEEECCCCHHHH--HHHHHHHCCCCCCEEEEEEEC Q ss_conf 86659999769850189--999999739998479999976 Q gi|254780570|r 2 IRKNIVIFISGEGTNML--SLIQATKKNDYPAEIVGVFSD 39 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~--~Il~~~~~~~~~~eI~~Visn 39 (205) -+|||.+.++|.++..+ .+++..+. ...+|..|+|. T Consensus 7 ~~k~ili~itGs~~~~~~~~~l~~L~~--~g~~v~vv~T~ 44 (194) T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYFKS--FFKEIRVVMTK 44 (194) T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHHTT--TSSEEEEEECH T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH--CCCEEEEEEEC T ss_conf 889699999588999999999999997--89959999812 No 82 >>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} (A:1-172) Probab=64.62 E-value=2.9 Score=22.07 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=19.0 Q ss_pred CCCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 866599997698-5018999999973999847999997 Q gi|254780570|r 2 IRKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 2 ~k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Vis 38 (205) |++||+|+.+|+ |+.+-..+. . ..+++.+.. T Consensus 1 M~mkI~IIGaG~iG~~la~~L~---~---~g~v~~~~~ 32 (172) T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS---L---YHDVTVVTR 32 (172) T ss_dssp -CCEEEEECCSHHHHHHHHHHH---T---TSEEEEECS T ss_pred CCCEEEEECCCHHHHHHHHHHH---C---CCCEEEEEC T ss_conf 9988999896799999999997---6---498699988 No 83 >>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} (A:) Probab=64.56 E-value=1.1 Score=24.85 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=21.2 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 866599997698501899999997399984799999768 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~ 40 (205) .+.|++|. |.|.-....+.++.... .++++.|+..+ T Consensus 15 ~~irv~iI--G~G~~g~~~~~~l~~~~-~~~lvav~d~~ 50 (365) T 2z2v_A 15 RHMKVLIL--GAGNIGRAIAWDLKDEF-DVYIGDVNNEN 50 (365) T ss_dssp -CCEEEEE--CCSHHHHHHHHHHTTTS-EEEEEESCHHH T ss_pred CCCEEEEE--CCCHHHHHHHHHHHCCC-CEEEEECCHHH T ss_conf 71479999--95699999999984689-84999887889 No 84 >>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} (A:114-250) Probab=63.76 E-value=11 Score=18.17 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=32.3 Q ss_pred CCCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 8665999976985-0189999999739998479999976888 Q gi|254780570|r 2 IRKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNSN 42 (205) Q Consensus 2 ~k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~d 42 (205) ..++++++++|.| +-+.++++...+.+...++.++.+.+.. T Consensus 3 ~~~~iv~iAgG~GIaP~~s~l~~~~~~~~~~~v~l~~~~r~~ 44 (137) T 1tvc_A 3 GMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTE 44 (137) T ss_dssp SSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSSS T ss_pred CCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEECCCH T ss_conf 565469996487864422210000124777420247401221 No 85 >>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* (A:1-40,A:148-221,A:327-383) Probab=62.51 E-value=9.1 Score=18.62 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=30.1 Q ss_pred CCCCEEEEEECCC-C-HHHHHHHHHHHCCCCCCEEEEEEECCCCCH--------HHHHHHHCCCCEEE Q ss_conf 9866599997698-5-018999999973999847999997688887--------88899860895046 Q gi|254780570|r 1 MIRKNIVIFISGE-G-TNMLSLIQATKKNDYPAEIVGVFSDNSNAQ--------GLVKARKEKVPTFP 58 (205) Q Consensus 1 M~k~riavl~SG~-G-snl~~Il~~~~~~~~~~eI~~Visn~~da~--------~l~~a~~~~Ip~~~ 58 (205) |.+++++|..+|- | |++..|-++ .+++ +|+..++-.. ..+.+++.|+.++. T Consensus 1 m~~~~v~iiG~G~~g~~~a~~la~~------g~~v-~v~e~~~~~~~d~~l~~~~~~~a~~~Gv~i~~ 61 (171) T 2qcu_A 1 METKDLIVIGGGINGAGIAADAAGR------GLSV-LMLEAQDLACADARLVLANAQMVVRKGGEVLT 61 (171) T ss_dssp --CBSEEEECCSHHHHHHHHHHHHT------TCCE-EEECSSSTTCSHHHHHHHHHHHHHHTTCEEEC T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCCE-EEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 9827989999679999999999978------9979-99969977460078799999866651434300 No 86 >>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} (A:1-139) Probab=62.48 E-value=11 Score=18.01 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=23.4 Q ss_pred CCCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 986659999769850-------1899999997399984799999768 Q gi|254780570|r 1 MIRKNIVIFISGEGT-------NMLSLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 1 M~k~riavl~SG~Gs-------nl~~Il~~~~~~~~~~eI~~Visn~ 40 (205) |+|+||+||+-|..+ .+.+++++.... ++..+.-++ T Consensus 18 ~~k~~I~vlfGG~S~EheVSl~Sa~~V~~aLd~~----~~~~~~I~~ 60 (139) T 2pvp_A 18 GSHMEFCVLFGGASFEHEISIVSAIALKGVLKDR----IKYFIFLDE 60 (139) T ss_dssp --CCCEEEEEECSSTTHHHHHHHHHHHHHHHGGG----EEEEEEECT T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC----CCEEEEEEC T ss_conf 9998899990858414699999999999986116----977999908 No 87 >>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} (A:237-397,A:442-503) Probab=62.26 E-value=11 Score=17.99 Aligned_cols=56 Identities=9% Similarity=-0.076 Sum_probs=36.0 Q ss_pred CCEEEEEECCC-CHHH-HHHHHHHHCCCCCCEEEEEEECCCCC----HHHHHHHHCCCCEEEEECCC Q ss_conf 66599997698-5018-99999997399984799999768888----78889986089504630132 Q gi|254780570|r 3 RKNIVIFISGE-GTNM-LSLIQATKKNDYPAEIVGVFSDNSNA----QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 3 k~riavl~SG~-Gsnl-~~Il~~~~~~~~~~eI~~Visn~~da----~~l~~a~~~~Ip~~~i~~~~ 63 (205) .++++++.||+ .|.+ .+++. +...++.++..+.... ..-+.|+..|++.+.+.... T Consensus 2 ~~kV~v~lSGGlDSSviaall~-----~~g~~V~a~t~~~~~~~E~e~a~~va~~Lg~~~~~i~i~~ 63 (223) T 1q15_A 2 FDTVGIPLSGGLDSSLVTALAS-----RHFKKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSE 63 (223) T ss_dssp CSEEEEECCSSHHHHHHHHHHT-----TTCSEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECH T ss_pred CCCEEEEECCCCCHHHHHHHHH-----HCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCEEECCCH T ss_conf 8856887058752488999876-----2034300012577777547899999998401333213888 No 88 >>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus HB8} (A:43-204) Probab=62.06 E-value=11 Score=18.02 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=9.3 Q ss_pred CCEEECCCCCCCCCC Q ss_conf 542313532233324 Q gi|254780570|r 105 NKILNIHPSLLPLFP 119 (205) Q Consensus 105 ~~~iN~HpslLP~yr 119 (205) +.++.+.|+.-|+|- T Consensus 133 ~~~~~~~~~vgGR~S 147 (162) T 1zzg_A 133 LKAFAIPKEVGGRFS 147 (162) T ss_dssp CEEEECCTTCCGGGC T ss_pred HHHEECCCCCCCCEE T ss_conf 442113453553201 No 89 >>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} (A:218-446) Probab=61.29 E-value=12 Score=17.87 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=34.7 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECC-----CCC-HHHHHHHHCCCCEEEEECC Q ss_conf 66599997698-50-1899999997399984799999768-----888-7888998608950463013 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDN-----SNA-QGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~-----~da-~~l~~a~~~~Ip~~~i~~~ 62 (205) .+|++|++||+ .| .+..++... .+ +.++.+|..+. ++. .+-+.|+..|++.++++.. T Consensus 23 ~~~v~v~~SGG~DSs~ll~l~~~~-~~--~~~i~~v~~~~g~~~~~~~~~a~~~a~~lgi~~~vi~i~ 87 (229) T 2vxo_A 23 TSKVLVLLSGGVDSTVCTALLNRA-LN--QEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAA 87 (229) T ss_dssp TCEEEEECCSSHHHHHHHHHHHHH-SC--GGGEEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECH T ss_pred CCCCEEEECCCCCHHHHHHHHHHH-HC--CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCH T ss_conf 455136630575138899999985-04--364379995633478655999999999849976998727 No 90 >>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} (A:1-86,A:293-306) Probab=61.03 E-value=12 Score=17.84 Aligned_cols=33 Identities=9% Similarity=0.311 Sum_probs=20.5 Q ss_pred CCCEEEEEECCCCH-------HHHHHHHHHHCCCCCCEEEEE Q ss_conf 86659999769850-------189999999739998479999 Q gi|254780570|r 2 IRKNIVIFISGEGT-------NMLSLIQATKKNDYPAEIVGV 36 (205) Q Consensus 2 ~k~riavl~SG~Gs-------nl~~Il~~~~~~~~~~eI~~V 36 (205) ||+||++++.|..+ ..+++.++..... +++..+ T Consensus 1 MkmkI~il~GG~SsE~evSl~Sa~~i~~aL~~~g--~~v~~i 40 (100) T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGG--IDAYPV 40 (100) T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTT--CEEEEE T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEE T ss_conf 9850999938687422849999999999998869--979998 No 91 >>1e9y_B Urease beta subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} (B:132-425,B:485-569) Probab=60.93 E-value=12 Score=17.83 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=57.7 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCC--------HHHHHHHHCCCCEEEEECCCCCCCCCHHHHH Q ss_conf 66599997698501899999997399984799999768888--------7888998608950463013233221012432 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNA--------QGLVKARKEKVPTFPIPYKDYISRREHEKAI 74 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da--------~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l 74 (205) ..++.+|.-|++|.-++|.+.+..|-...+| ++|- ..|.-|.++.+++-.. .|..+...|-+.. T Consensus 59 P~N~g~~gkGn~s~~~~l~eqi~aGa~glKi------HEDwGatpa~Id~~L~vad~~dvqvaiH--tDtlNE~Gfve~T 130 (379) T 1e9y_B 59 SMNLGFLAKGNASNDASLADQIEAGAIGFXI------HEDWGTTPSAINHALDVADKYDVQVAIH--TDTLNEAGCVEDT 130 (379) T ss_dssp SSEEEEEEECCCSCHHHHHHHHHTTCSEEEE------CGGGCCCHHHHHHHHHHHHHTTCEEEEC--CCTTCSSCCHHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHHHHHHHHCCEEEEE--CCCCHHHHHHHHH T ss_conf 5016875266655288899999716660001------2332222799999999998640236773--0572056899999 Q ss_pred HHHCC--------------CCCCEEEEEEEEEEECCCHH Q ss_conf 10001--------------23430364311222057213 Q gi|254780570|r 75 LMQLS--------------SIQPDLICLAGYMRLLSRDF 99 (205) Q Consensus 75 ~~~l~--------------~~~~Dliv~~g~~~il~~~~ 99 (205) +..++ .+.||++.++|+..+||.+- T Consensus 131 ~~a~~gRtiH~~HtEGAGGGHAPDii~~~~~~nvlpsST 169 (379) T 1e9y_B 131 MAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAST 169 (379) T ss_dssp HHHHTTCCEEETTTTSTTSCSTTTGGGGGGSTTEEEEEC T ss_pred HHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCEEEEE T ss_conf 986468865134442310032799999861148255520 No 92 >>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex; HET: PSQ; 1.70A {Escherichia coli} (G:153-278) Probab=60.71 E-value=12 Score=17.80 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=47.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCHHHHHH----HHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 6659999769850189999999739998479999976--8888788899----860895046301323322101243210 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSD--NSNAQGLVKA----RKEKVPTFPIPYKDYISRREHEKAILM 76 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn--~~da~~l~~a----~~~~Ip~~~i~~~~~~~~~~~~~~l~~ 76 (205) .+|+++..-+.+.-+.+++..+.. ++.++.++--. .++...++.+ ++.|..+...+. +.+ T Consensus 3 glki~~vGd~~~rv~~S~~~~~~~--~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d------------~~e 68 (126) T 1duv_G 3 EMTLVYAGDARNNMGNSMLEAAAL--TGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED------------VAK 68 (126) T ss_dssp GCEEEEESCTTSHHHHHHHHHHHH--HCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESC------------HHH T ss_pred CEEEEEECCCCCCHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC------------HHH T ss_conf 427998357543206778877632--682243113423488489999998764047986899724------------322 Q ss_pred HCCCCCCEEEEEEEE------------------EEECCCHHHHC-CCCCEEECCCCCCCCCC Q ss_conf 001234303643112------------------22057213210-66542313532233324 Q gi|254780570|r 77 QLSSIQPDLICLAGY------------------MRLLSRDFVES-YKNKILNIHPSLLPLFP 119 (205) Q Consensus 77 ~l~~~~~Dliv~~g~------------------~~il~~~~l~~-~~~~~iN~HpslLP~yr 119 (205) .++ +.|+|..-.| ...+.+++++. .+..++=+|| ||.+| T Consensus 69 a~~--~aDviy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~~a~~dai~mH~--LP~~R 126 (126) T 1duv_G 69 GVE--GADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHC--LPAFH 126 (126) T ss_dssp HHT--TCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEEC--SCCCC T ss_pred HCC--CCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHCCCCEEEECC--CCCCC T ss_conf 115--79787310466766555455544333116178799997504999699699--98751 No 93 >>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} (A:1-191,A:370-394) Probab=59.95 E-value=3.1 Score=21.79 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=59.2 Q ss_pred CCCEEEEEE--CCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHH--HHHHHCCCCEEEEECCCC-CCCCCHHHHH Q ss_conf 866599997--6985--01899999997399984799999768888788--899860895046301323-3221012432 Q gi|254780570|r 2 IRKNIVIFI--SGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGL--VKARKEKVPTFPIPYKDY-ISRREHEKAI 74 (205) Q Consensus 2 ~k~riavl~--SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l--~~a~~~~Ip~~~i~~~~~-~~~~~~~~~l 74 (205) ||+||++.. +.+| +-...+.+..... +++|..+..+.+..... ....-..++....+.... ...-.+...+ T Consensus 14 MKmkI~~v~~p~~GG~~~~~~~la~~L~~~--G~eV~vit~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 91 (216) T 2jjm_A 14 MKLKIGITCYPSVGGSGVVGTELGKQLAER--GHEIHFITSGLPFRLNKVYPNIYFHEVTVNQYSVFQYPPYDLALASKM 91 (216) T ss_dssp -CCEEEEECCC--CHHHHHHHHHHHHHHHT--TCEEEEECSSCC----CCCTTEEEECCCCC----CCSCCHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 657799989999996999999999999977--998999947998642113797069970456666101560358999999 Q ss_pred HHHCCCCCCEEEEEEEEE-EECCCHHHHCCC---C-CEEECCCCCCCCCCC---CCCC-CCHHCCCCCCC Q ss_conf 100012343036431122-205721321066---5-423135322333244---4212-10000246534 Q gi|254780570|r 75 LMQLSSIQPDLICLAGYM-RLLSRDFVESYK---N-KILNIHPSLLPLFPG---LHTH-RRVLQSGIKIT 135 (205) Q Consensus 75 ~~~l~~~~~Dliv~~g~~-~il~~~~l~~~~---~-~~iN~HpslLP~yrG---~~~~-~~ai~~g~~~~ 135 (205) .+.+++.++|+|.+..+. .-+...++..+. . -++..|.+-...++. .... .+++..-+... T Consensus 92 ~~~i~~~~~DiIh~h~~~~~~~~~~l~~~~~~~~ip~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii 161 (216) T 2jjm_A 92 AEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVT 161 (216) T ss_dssp HHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEE T ss_pred HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEE T ss_conf 9998870984898324331168999998750567733553112221000147788899999997441767 No 94 >>1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (A:1-55,A:299-491) Probab=59.63 E-value=12 Score=17.68 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=56.2 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHH-HHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 6599997698501899999997399984799999768888788899-860895046301323322101243210001234 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKA-RKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a-~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) +|++|+ +.|+-...+.+... ++..+++++.+........++. +..+-...++... . ..++.+.++..+ T Consensus 105 krv~I~--~~~~~~~~~~~~l~--ELGm~vv~~~~~~~~~~~~~~~~~~l~~~~~i~dd~-----d--~~E~~~~i~~~~ 173 (248) T 1m1n_A 105 KRVMLY--IGGLRPRHVIGAYE--DLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDV-----T--GYEFEEFVKRIK 173 (248) T ss_dssp CEEEEC--BSSSHHHHTHHHHH--TTTCEEEEEEESSCCHHHHHTTTTTSCTTCEEEESC-----B--HHHHHHHHHHHC T ss_pred CEEEEE--CCCHHHHHHHHHHH--HCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEECCC-----C--HHHHHHHHHHCC T ss_conf 836773--68511799999999--879979999705787789999998679987897389-----9--999999998539 Q ss_pred CEEEEEEEEEEECCCHHHHCCCCCEEECCC----CCCCCCCCCC Q ss_conf 303643112220572132106654231353----2233324442 Q gi|254780570|r 83 PDLICLAGYMRLLSRDFVESYKNKILNIHP----SLLPLFPGLH 122 (205) Q Consensus 83 ~Dliv~~g~~~il~~~~l~~~~~~~iN~Hp----slLP~yrG~~ 122 (205) |||++...+ .+.+..+....++.+|. +..=-|+|+. T Consensus 174 PDLi~g~~~----ek~~a~k~giP~~~~~~~d~~~py~Gy~Ga~ 213 (248) T 1m1n_A 174 PDLIGSGIK----EKFIFQKMGIPFREMHSWDYSGPYHGFDGFA 213 (248) T ss_dssp CSEEEECHH----HHHHHHHTTCCEEESSSGGGCCCCSHHHHHH T ss_pred CCEEEECCC----HHHHHHHCCCCEEECCCCCCCCCCCCHHHHH T ss_conf 999998984----0799998299970077654688853586699 No 95 >>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4} (A:1-131,A:255-332) Probab=59.31 E-value=13 Score=17.64 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=21.9 Q ss_pred CCCCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 98665999976985--018999999973999847999997688 Q gi|254780570|r 1 MIRKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 1 M~k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) |.++||+|+.+|.+ +.+..|.+. ....+|. ||+.++ T Consensus 1 Ms~~kIvIIGaG~aG~~aA~~lr~~----~~~~~It-vi~~~~ 38 (209) T 3iwa_A 1 MSLKHVVVIGAVALGPKAACRFKRL----DPEAHVT-MIDQAS 38 (209) T ss_dssp ---CEEEEECCSSHHHHHHHHHHHH----CTTSEEE-EECCC- T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCCCCEE-EEECCC T ss_conf 9879999989889999999999807----9898389-992899 No 96 >>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} (A:) Probab=58.79 E-value=13 Score=17.59 Aligned_cols=56 Identities=7% Similarity=-0.033 Sum_probs=37.0 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCC---CC-HHHHHHHHCCCCEEEEECCC Q ss_conf 66599997698-50-18999999973999847999997688---88-78889986089504630132 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNS---NA-QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~---da-~~l~~a~~~~Ip~~~i~~~~ 63 (205) +.|+++.+||+ .| .+..++.. ...++.+|..+.. +. ..-+.++..+++...++... T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll~~-----~~~~v~~v~~d~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 67 (203) T 3k32_A 6 LXDVHVLFSGGKDSSLSAVILKK-----LGYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDR 67 (203) T ss_dssp CEEEEEECCCSHHHHHHHHHHHH-----TTEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCT T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCH T ss_conf 46189995376899999999997-----299769999679986379999999998469629997889 No 97 >>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A (A:1-189) Probab=58.22 E-value=13 Score=17.52 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=33.5 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCC---CCH----HHHHHHHCCCCEEEEECC Q ss_conf 66599997698-50-18999999973999847999997688---887----888998608950463013 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNS---NAQ----GLVKARKEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~---da~----~l~~a~~~~Ip~~~i~~~ 62 (205) +.++++++||+ .| .+..++... .+.++.+|..+.. ... ..+.++..+++..+++.. T Consensus 20 ~~~vvi~~SGG~DS~~~l~ll~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (189) T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKA----IGDRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQ 84 (189) T ss_dssp TSCEEEECCSSHHHHHHHHHHHHH----HGGGEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECH T ss_pred CCCEEEEECCCHHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEHH T ss_conf 998999906889999999999997----58877999958987885389999996541257424897304 No 98 >>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} (A:) Probab=58.16 E-value=13 Score=17.52 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=34.7 Q ss_pred CCCEEEEEECCC-CHHH-HHHHHHHHCCCCCCEEEEEEECCCCC------HHHHHHHHCCCCEEEEECCC Q ss_conf 866599997698-5018-99999997399984799999768888------78889986089504630132 Q gi|254780570|r 2 IRKNIVIFISGE-GTNM-LSLIQATKKNDYPAEIVGVFSDNSNA------QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 2 ~k~riavl~SG~-Gsnl-~~Il~~~~~~~~~~eI~~Visn~~da------~~l~~a~~~~Ip~~~i~~~~ 63 (205) .++|++|.+||+ .|.+ ..++.. . ..++..+..+.... .+-+.|+..|++.+.++... T Consensus 28 ~~~kv~V~lSGG~DS~~ll~l~~~--~---~~~~~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~~~~ 92 (249) T 3fiu_A 28 PAEGFVIGLSGGIDSAVAASLAVK--T---GLPTTALILPSDNNQHQDMQDALELIEMLNIEHYTISIQP 92 (249) T ss_dssp TCSEEEEECCSSHHHHHHHHHHHH--T---TSCEEEEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--H---CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 998399977799899999999998--2---9863210025664047789999999862454431145889 No 99 >>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3itk_A* (A:1-213) Probab=58.08 E-value=13 Score=17.51 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=25.9 Q ss_pred CCC-CEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEE Q ss_conf 986-6599997698-50189999999739998479999976888878889986089504 Q gi|254780570|r 1 MIR-KNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTF 57 (205) Q Consensus 1 M~k-~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~ 57 (205) |++ +||+|+.+|. |+.+-..+-. . .+++..+..|+. ...++...+...+.. T Consensus 2 m~~~~kI~IiGaG~mG~~iA~~la~--~---G~~v~v~~~d~~-~~~~~~~~~~~~~~~ 54 (213) T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAH--M---CPEIRVTVVDVN-ESRINAWNSPTLPIY 54 (213) T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHH--H---CTTSEEEEECSC-HHHHHHHTSSSCSSC T ss_pred CCCCCEEEEECCCCCHHHHHHHHHH--H---CCCCEEEEEECC-HHHHHHHHCCCCCCC T ss_conf 6568679999988308999999997--4---999849999899-999999877999977 No 100 >>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} (A:) Probab=57.67 E-value=13 Score=17.46 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=38.2 Q ss_pred CCCCEEEEEECCCCHHH-HHHHHHHHCCCCCCEEEEEEECCCCC-HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 98665999976985018-99999997399984799999768888-78889986089504630132332210124321000 Q gi|254780570|r 1 MIRKNIVIFISGEGTNM-LSLIQATKKNDYPAEIVGVFSDNSNA-QGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 1 M~k~riavl~SG~Gsnl-~~Il~~~~~~~~~~eI~~Visn~~da-~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) |.| ++|++|.++.+ +++..++.+. .++|+++--|.++. ...+..++.+.....+. .|..+.+..++-+.+.. T Consensus 1 m~K---~vlITGas~GIG~aia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~-~D~~~~~~v~~~~~~~~ 74 (256) T 1geg_A 1 MKK---VALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGGHAVAVK-VDVSDRDQVFAAVEQAR 74 (256) T ss_dssp -CC---EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE-CCTTSHHHHHHHHHHHH T ss_pred CCC---EEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHHHH T ss_conf 998---9999478509999999999987--99899998989999999999985289713785-12100057789999999 Q ss_pred CCC-CCEEEE-EEEEEE Q ss_conf 123-430364-311222 Q gi|254780570|r 79 SSI-QPDLIC-LAGYMR 93 (205) Q Consensus 79 ~~~-~~Dliv-~~g~~~ 93 (205) +.+ .+|.+| .+|... T Consensus 75 ~~~g~iDilvnnAg~~~ 91 (256) T 1geg_A 75 KTLGGFDVIVNNAGVAP 91 (256) T ss_dssp HHTTCCCEEEECCCCCC T ss_pred HHCCCCEEEEECCCCCC T ss_conf 96399709998987666 No 101 >>2pfs_A USP, universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.25A {Nitrosomonas europaea atcc 19718} (A:) Probab=57.61 E-value=13 Score=17.45 Aligned_cols=89 Identities=9% Similarity=0.037 Sum_probs=43.9 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEEECCCC--------------C-------------HHHHHHHHC Q ss_conf 98665999976985018999999973-9998479999976888--------------8-------------788899860 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKK-NDYPAEIVGVFSDNSN--------------A-------------QGLVKARKE 52 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~-~~~~~eI~~Visn~~d--------------a-------------~~l~~a~~~ 52 (205) ||-+||.|-++++-++..++-.+..- ...+.++.++-.-.+. . .....+... T Consensus 4 m~~k~ILV~vd~s~~s~~al~~a~~~a~~~~~~i~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (150) T 2pfs_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPXPDTPYGTAIPLDTETTYDAXLDVEKQKLSQIGNTL 83 (150) T ss_dssp CSCSEEEEECCCCTTHHHHHHHHHHHHHHHTCEEEEEEEEC----------CCCCSSSCCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 88987999983998999999999999987299068888852255544443333200069999999999999999888754 Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEE Q ss_conf 89504630132332210124321000123430364311222 Q gi|254780570|r 53 KVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMR 93 (205) Q Consensus 53 ~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv~~g~~~ 93 (205) +++.... ........+.+.+..++.++|++|+....+ T Consensus 84 ~~~~~~~----~~~~g~~~~~i~~~a~~~~~dliv~g~~~~ 120 (150) T 2pfs_A 84 GIDPAHR----WLVWGEPREEIIRIAEQENVDLIVVGSHGR 120 (150) T ss_dssp TCCGGGE----EEEESCHHHHHHHHHHHTTCSEEEEEEC-- T ss_pred CCCCEEE----EEEECCHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 9875079----998178899999999973983799968999 No 102 >>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A (A:127-241) Probab=57.37 E-value=13 Score=17.43 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=24.6 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCC Q ss_conf 986659999769850189999999739998479999976888878889986089 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKV 54 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~I 54 (205) |..+|++|+.+|. --..+....... .+++ .++|+.....-+.++..+. T Consensus 1 l~~kki~iiG~G~--~G~~~a~~l~~~--G~~v--~v~~r~~~~~~~~~~~~~~ 48 (115) T 2hk9_A 1 VKEKSILVLGAGG--ASRAVIYALVKE--GAKV--FLWNRTKEKAIKLAQKFPL 48 (115) T ss_dssp GGGSEEEEECCSH--HHHHHHHHHHHH--TCEE--EEECSSHHHHHHHTTTSCE T ss_pred CCCCEEEECCCHH--HHHHHHHHHHHC--CCEE--EEEECHHHHHHHHHHCCCC T ss_conf 5666244036407--889999999964--9969--9972126777776641353 No 103 >>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A (A:48-218) Probab=57.28 E-value=2.6 Score=22.40 Aligned_cols=50 Identities=18% Similarity=0.058 Sum_probs=27.9 Q ss_pred CCHHHHHHHHCCCCCCEEEEEEEEEEECC--CHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 10124321000123430364311222057--2132106654231353223332444 Q gi|254780570|r 68 REHEKAILMQLSSIQPDLICLAGYMRLLS--RDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 68 ~~~~~~l~~~l~~~~~Dliv~~g~~~il~--~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) +.+.+++++.|.+.+.=+.++ |+..-. ...++..+. .=+|||.++.+||. T Consensus 91 e~ft~~ii~~l~~~~~ivf~L--wG~~A~~~~~~i~~~~~--~i~hpsP~s~~r~F 142 (171) T 2owr_A 91 DKISKLLLQHITKHVSVLYCL--GKTDFSNIRAKLESPVT--TIVGYHPAARDRQF 142 (171) T ss_dssp HHHHHHHHHHHTTTCSEEEEE--CHHHHHHHHHHCSCCCE--EEEECCTTC----C T ss_pred HHHHHHHHHHHHCCCCEEEEE--ECHHHHHHHCCCCCCEE--EEECCCCCCCCCCC T ss_conf 999999999971669739998--52787864415799969--99688886556799 No 104 >>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* (A:199-363,A:543-568) Probab=57.03 E-value=14 Score=17.39 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=59.1 Q ss_pred CCEEEEEECCC-----CHHHHHHHHHHHCCCCCCEEEEEE-ECCCCC-HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 66599997698-----501899999997399984799999-768888-78889986089504630132332210124321 Q gi|254780570|r 3 RKNIVIFISGE-----GTNMLSLIQATKKNDYPAEIVGVF-SDNSNA-QGLVKARKEKVPTFPIPYKDYISRREHEKAIL 75 (205) Q Consensus 3 k~riavl~SG~-----Gsnl~~Il~~~~~~~~~~eI~~Vi-sn~~da-~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~ 75 (205) |.||+++.|.. |..+..+++.....+ +||.+.. ++.+.. ...++.++.--....++. ..++++. T Consensus 7 kLRIGyvSsdf~~H~v~~~~~~ll~~~dr~~--fev~~y~~~~~~~~d~~t~~~~~~~~~~~~l~~-------~~~~e~a 77 (191) T 2vsy_A 7 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQ--PDLQMHLFATSGDDGSTLRTRLAQASTLHDVTA-------LGHLATA 77 (191) T ss_dssp CEEEEEEESCSSSSHHHHHHHHHHHHHHHHC--TTEEEEEEESSCCCSCHHHHHHHHTSEEEECTT-------CCHHHHH T ss_pred CEEEEEEHHHCCCCHHHHHHHHHHHCCCCCC--CCEEEEECCCCCCCCHHHHHHHHCCCEEEECCC-------CCHHHHH T ss_conf 6599998244062738888676664013334--322456337887751699999862584887678-------9858999 Q ss_pred HHCCCCCCEEEE-EEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCC-EEEE Q ss_conf 000123430364-311222057213210665423135322333244421210000246534453-0331 Q gi|254780570|r 76 MQLSSIQPDLIC-LAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCT-VHMV 142 (205) Q Consensus 76 ~~l~~~~~Dliv-~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~ai~~g~~~~G~T-iH~v 142 (205) +.|.+.++|+.| +.||+.=- ...+.+..|+ |+|-++..-...||.. +.|+ T Consensus 78 ~~Ir~d~iDILvdl~g~t~~~--------rl~i~a~RpA---------PVQvs~lG~p~TtG~~~iDY~ 129 (191) T 2vsy_A 78 KHIRHHGIDLLFDLRGWGGGG--------RPEVFALRPA---------PVQVNWLAYPGTSGAPWMDYV 129 (191) T ss_dssp HHHHHTTCSEEEECSSCTTCS--------SCHHHHTCCS---------SEEEEESSSSSCCCCTTCCEE T ss_pred HHHHHCCCCEEEECCCCCCCC--------CHHHHHCCCC---------CEEEEECCCCCCCCCCCCCEE T ss_conf 998862871899647776666--------3145542788---------757784477677777777869 No 105 >>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} (A:127-259,A:340-385) Probab=56.62 E-value=14 Score=17.34 Aligned_cols=74 Identities=9% Similarity=-0.036 Sum_probs=40.7 Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCCC-----HHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 99999997399984799999768888-----78889986089504630132332-2101243210001234303643112 Q gi|254780570|r 18 LSLIQATKKNDYPAEIVGVFSDNSNA-----QGLVKARKEKVPTFPIPYKDYIS-RREHEKAILMQLSSIQPDLICLAGY 91 (205) Q Consensus 18 ~~Il~~~~~~~~~~eI~~Visn~~da-----~~l~~a~~~~Ip~~~i~~~~~~~-~~~~~~~l~~~l~~~~~Dliv~~g~ 91 (205) +++.+.......+ .|+.|..|.+-. ...+.+++.|+.......-.+.. ..++.. .+..+++.+||.|++.++ T Consensus 3 ~al~~~l~~~g~k-kVaiI~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~D~~~-~i~~i~~~~pd~Vi~~~~ 80 (179) T 1pea_A 3 APLAAYLIRHYGE-RVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQR-AVERIYQARADVVFSTVV 80 (179) T ss_dssp HHHHHHHHTTTCS-EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHH-HHHHHHHHTCSEEEEECC T ss_pred HHHHHHHHHHCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH-HHHHHHHCCCCEEEEEEE T ss_conf 9999999871784-79982267762355655466666641683578996167644201689-999987518998999963 Q ss_pred EE Q ss_conf 22 Q gi|254780570|r 92 MR 93 (205) Q Consensus 92 ~~ 93 (205) .. T Consensus 81 ~~ 82 (179) T 1pea_A 81 GT 82 (179) T ss_dssp TH T ss_pred CH T ss_conf 47 No 106 >>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A (A:1-126) Probab=56.02 E-value=14 Score=17.28 Aligned_cols=70 Identities=9% Similarity=-0.033 Sum_probs=34.9 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .+.|++++ |.|+--...........-.++++.|+..+++ ...+..+.....- + +-+.++.. T Consensus 4 ~~irvgii--G~G~~g~~~~~~~~~~~~~~~ivav~d~~~~----~~~~~~~~~~~~~------~-------~~~~~~~~ 64 (126) T 3gdo_A 4 DTIKVGIL--GYGLSGSVFHGPLLDVLDEYQISKIMTSRTE----EVKRDFPDAEVVH------E-------LEEITNDP 64 (126) T ss_dssp TCEEEEEE--CCSHHHHHTTHHHHTTCTTEEEEEEECSCHH----HHHHHCTTSEEES------S-------THHHHTCT T ss_pred CCCEEEEE--CCCHHHHHHHHHHHHCCCCCEEEEEECCCHH----HHHHHCCCCCEEC------C-------HHHHHCCC T ss_conf 88389999--2969999999999823899189999588999----9998679984428------9-------99995599 Q ss_pred CCEEEEEEE Q ss_conf 430364311 Q gi|254780570|r 82 QPDLICLAG 90 (205) Q Consensus 82 ~~Dliv~~g 90 (205) ++|.++.+. T Consensus 65 ~vd~V~i~~ 73 (126) T 3gdo_A 65 AIELVIVTT 73 (126) T ss_dssp TCCEEEECS T ss_pred CCCEEEEEC T ss_conf 999899815 No 107 >>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A* (A:50-222) Probab=55.56 E-value=13 Score=17.52 Aligned_cols=114 Identities=4% Similarity=-0.074 Sum_probs=42.8 Q ss_pred EEEEEECCCCH--HHHHHHHHHHCCC---CCCEEEEEEECCCCCHHHHH-HHHCCCC-E-EEEECCCCCCCCCH--HHHH Q ss_conf 59999769850--1899999997399---98479999976888878889-9860895-0-46301323322101--2432 Q gi|254780570|r 5 NIVIFISGEGT--NMLSLIQATKKND---YPAEIVGVFSDNSNAQGLVK-ARKEKVP-T-FPIPYKDYISRREH--EKAI 74 (205) Q Consensus 5 riavl~SG~Gs--nl~~Il~~~~~~~---~~~eI~~Visn~~da~~l~~-a~~~~Ip-~-~~i~~~~~~~~~~~--~~~l 74 (205) .++++. =+|| ..+++.+++..-- ...-..+-+-|+-|...+.. .++.+.. + +++-.|-+.+.|.- -... T Consensus 29 ~vv~iG-iGGS~LG~~~l~~al~~~~~~~~~~~~~i~~~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSG~T~ET~~~~~~~ 107 (173) T 3ff1_A 29 VLVVIG-IGGSYLGARAAIEXLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLF 107 (173) T ss_dssp EEEEEC-CGGGTHHHHHHHHHHSCSSCCCCSSCEEEEESSSCCHHHHHHHHHHGGGCCEEEEEECSSSCCHHHHHHHHHH T ss_pred EEEEEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH T ss_conf 899994-5175689999999999887611678827985798744689999973176675599998998877699999999 Q ss_pred HHHCCCC------CCEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCC Q ss_conf 1000123------43036431122205721321066542313532233324 Q gi|254780570|r 75 LMQLSSI------QPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFP 119 (205) Q Consensus 75 ~~~l~~~------~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yr 119 (205) .+.+++. .-.+++...=..-+-+...+.-..+++.+.+..-++|- T Consensus 108 ~~~l~~~~~~~~~~~~~vaiT~~~s~~l~~~a~~~~~~~f~~~~~vGGRfS 158 (173) T 3ff1_A 108 KQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYS 158 (173) T ss_dssp HHHHHHHHCHHHHHHHEEEEECSSCSHHHHHHHHHTCEEEECCTTCCGGGC T ss_pred HHHHHHCCCCHHHHCCEEEECCCCHHHHHHHHHHCCCCEECCCCCCCCCEE T ss_conf 999997047355544789973675567898744013115516888888631 No 108 >>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} (A:184-315) Probab=54.66 E-value=13 Score=17.52 Aligned_cols=80 Identities=9% Similarity=-0.125 Sum_probs=41.3 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEE--ECCCHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 78889986089504630132332210124321000123430364311222--0572132106654231353223332444 Q gi|254780570|r 44 QGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMR--LLSRDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 44 ~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv~~g~~~--il~~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) ...+.+++.|+|+..-+..+-.-.+.+..-+-..---.++|+++..|... ..+..+-...+.-.|+.+|...-.|+.- T Consensus 32 ~l~~lae~~~iPv~~t~~~kg~~~~~~p~~~G~~g~~~~aDlil~vG~~~~~~~~~~~~~~~~~i~I~~d~~~~~~~~~d 111 (132) T 1efv_A 32 LLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVAD 111 (132) T ss_dssp HHHHHHHHHTCEEEECHHHHHTTSSCGGGBBSTTSBCCCCSEEEEESCCCCHHHHTTTTTCSEEEEEESCTTCGGGGTCS T ss_pred HHHHHHHHHCCCEEEEHHHCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCC T ss_conf 99999998699189747443078999176406678524888999976257567752688887799944899998644488 Q ss_pred CC Q ss_conf 21 Q gi|254780570|r 122 HT 123 (205) Q Consensus 122 ~~ 123 (205) .+ T Consensus 112 ~~ 113 (132) T 1efv_A 112 YG 113 (132) T ss_dssp EE T ss_pred EE T ss_conf 78 No 109 >>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} (A:174-332) Probab=54.14 E-value=15 Score=17.08 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=51.4 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCHHHH----HHHHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 6659999769850189999999739998479999976--88887888----99860895046301323322101243210 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSD--NSNAQGLV----KARKEKVPTFPIPYKDYISRREHEKAILM 76 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn--~~da~~l~----~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~ 76 (205) .+||++.+-+....+.+++..+.. ++.++.++... .++...++ .|++.|..+...+. +-+ T Consensus 3 glkia~vGD~~~rv~~Sl~~~~~~--~g~~~~l~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d------------~~e 68 (159) T 2w37_A 3 GLTLTFMGDGRNNVANSLLVTGAI--LGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDD------------LDE 68 (159) T ss_dssp TCEEEEESCTTSHHHHHHHHHHHH--HTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESC------------HHH T ss_pred CCCEEEECCCCCCCCCHHHHHHHH--CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC------------HHH T ss_conf 444022036765654239999863--698899823423378589988876655337986999838------------999 Q ss_pred HCCCCCCEEEEEEEEEEE-------------------CCCHHHHCCCCCEEECCCCCCCCCCCCCCC Q ss_conf 001234303643112220-------------------572132106654231353223332444212 Q gi|254780570|r 77 QLSSIQPDLICLAGYMRL-------------------LSRDFVESYKNKILNIHPSLLPLFPGLHTH 124 (205) Q Consensus 77 ~l~~~~~Dliv~~g~~~i-------------------l~~~~l~~~~~~~iN~HpslLP~yrG~~~~ 124 (205) .++ +.|+|..-.|-.. +..+.++..+..++=+|| ||.+||..+- T Consensus 69 a~~--~aDviyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~~~mH~--LP~~r~~e~~ 131 (159) T 2w37_A 69 GLK--GSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHC--LPAFHNTDTQ 131 (159) T ss_dssp HHT--TCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEEC--SCCCCSSCSH T ss_pred HHC--CCCEEEECCEEECCCCCHHHHHHHHHCCEECHHHHHHHHCCCCCEEEECC--CCCCCCCCCC T ss_conf 965--79999974554022210678898873648639999985089979699798--9899885433 No 110 >>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* (A:1-204) Probab=53.39 E-value=16 Score=17.00 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=18.0 Q ss_pred CCCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 866599997698-50189999999739998479999 Q gi|254780570|r 2 IRKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGV 36 (205) Q Consensus 2 ~k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~V 36 (205) |++||+|++.|+ |+.+-..+ .+ +-+++|.++ T Consensus 1 M~mkIaViG~G~~G~~~A~~l---a~-~~G~~V~~~ 32 (204) T 3c7a_A 1 MTVKVCVCGGGNGAHTLSGLA---AS-RDGVEVRVL 32 (204) T ss_dssp -CEEEEEECCSHHHHHHHHHH---TT-STTEEEEEE T ss_pred CCCEEEEECCCHHHHHHHHHH---HH-CCCCEEEEE T ss_conf 998799986498999999999---96-689858999 No 111 >>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661} (A:1-128) Probab=53.25 E-value=12 Score=17.87 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=34.8 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 665999976985-0189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) +.|+++. |.| ..-+..+.+.+... ..+++.|...++. ++..++|.+. + +.+.+.+. T Consensus 13 ~irv~ii--G~gg~~g~~~~~~l~~~~-~~~i~~v~~~~~~------~~~~~~~~~~-------~-------~~~~~~~~ 69 (128) T 2yv1_A 13 NTKAIVQ--GITGRQGSFHTKKMLECG-TKIVGGVTPGKGG------QNVHGVPVFD-------T-------VKEAVKET 69 (128) T ss_dssp TCCEEEE--TTTSHHHHHHHHHHHHTT-CCEEEEECTTCTT------CEETTEEEES-------S-------HHHHHHHH T ss_pred CCEEEEE--CCCCCHHHHHHHHHHHHC-CCEEEEECCCCCC------CEEECCCCCC-------C-------HHHHCCCC T ss_conf 9859998--998847689999999819-9778877799886------4773812557-------4-------56620555 Q ss_pred CCEEEEEEE Q ss_conf 430364311 Q gi|254780570|r 82 QPDLICLAG 90 (205) Q Consensus 82 ~~Dliv~~g 90 (205) ++|+++.+. T Consensus 70 ~~d~V~i~~ 78 (128) T 2yv1_A 70 DANASVIFV 78 (128) T ss_dssp CCCEEEECC T ss_pred CCCEEEEEE T ss_conf 663699960 No 112 >>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter} (A:1-195) Probab=53.23 E-value=16 Score=16.98 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=18.3 Q ss_pred CCC-CEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 986-6599997698-50189999999739998479999 Q gi|254780570|r 1 MIR-KNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGV 36 (205) Q Consensus 1 M~k-~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~V 36 (205) ||+ +||+|+.+|. |+.+-..+- .. .++|.++ T Consensus 1 M~~~mkI~IiGaG~~G~~~A~~La---~~--G~~V~l~ 33 (195) T 1bg6_A 1 MIESKTYAVLGLGNGGHAFAAYLA---LK--GQSVLAW 33 (195) T ss_dssp ---CCEEEEECCSHHHHHHHHHHH---HT--TCEEEEE T ss_pred CCCCCEEEEECCCHHHHHHHHHHH---HC--CCEEEEE T ss_conf 998996999888899999999999---78--9958999 No 113 >>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} (A:1-132) Probab=53.14 E-value=16 Score=16.97 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=34.3 Q ss_pred CCCEEEEEECCC-CHH-HHHHHHHHHCCCCCCEEEEEEECCCCC------HHHHHHHHCCCCEEEEECCC Q ss_conf 866599997698-501-899999997399984799999768888------78889986089504630132 Q gi|254780570|r 2 IRKNIVIFISGE-GTN-MLSLIQATKKNDYPAEIVGVFSDNSNA------QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 2 ~k~riavl~SG~-Gsn-l~~Il~~~~~~~~~~eI~~Visn~~da------~~l~~a~~~~Ip~~~i~~~~ 63 (205) .++|+++.+||+ .|. +..++.... +..+.++..+.+.. ...+.|+..|+|.+.++..+ T Consensus 24 ~~~~v~v~~SGG~DS~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~i~~~~i~~~~ 89 (132) T 1xng_A 24 GFKKVVYGLSGGLDSAVVGVLCQKVF----KENAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAP 89 (132) T ss_dssp TCCCEEEECCSSHHHHHHHHHHHHHH----GGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHH----HHCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHH T ss_conf 99829997878889999999999862----4330787225301561133679999998531340000137 No 114 >>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} (A:1-96,A:208-267) Probab=52.98 E-value=16 Score=16.95 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=37.4 Q ss_pred CCCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 8665999976985--01899999997399984799999768888788899860895046301323322101243210001 Q gi|254780570|r 2 IRKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 2 ~k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) |+..|+||=||-| |-++.|.+..- ..++ .-+.|+..++ +|-.. ...-..+-.++.+.+. T Consensus 2 ~~~pIgvfDSGvGGLtV~~~i~~~lP----~~~~-iY~gD~a~~P-------YG~ks-------~~~i~~~~~~~~~~l~ 62 (156) T 2gzm_A 2 LNRAIGVIDSGVGGLTVAKELIRQLP----KERI-IYLGDTARCP-------YGPRS-------REEVRQFTWEMTEHLL 62 (156) T ss_dssp TTSCEEEEESSSTTHHHHHHHHHHCT----TSCE-EEEECTTTCC-------CTTSC-------HHHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC----CCCE-EEEECCCCCC-------CCCCC-------HHHHHHHHHHHHHHHH T ss_conf 99978999889667999999999789----9998-9995378999-------89999-------9999999999999998 Q ss_pred CCCCEEEEEE Q ss_conf 2343036431 Q gi|254780570|r 80 SIQPDLICLA 89 (205) Q Consensus 80 ~~~~Dliv~~ 89 (205) +.+++++|.| T Consensus 63 ~~~~k~iViA 72 (156) T 2gzm_A 63 DLNIKMLVIA 72 (156) T ss_dssp TTTCSEEEEC T ss_pred HHCCCEEEEC T ss_conf 6167879972 No 115 >>2q7x_A UPF0052 protein SP_1565; NP_346012.1, uncharacterized protein SP_1565, structural genomics, joint center for structural genomics; HET: MLY MSE; 2.00A {Streptococcus pneumoniae TIGR4} (A:1-46,A:122-130,A:172-326) Probab=52.70 E-value=16 Score=16.93 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=42.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) .+||+++ |.||.|-.++...+. +..++..|+|--.| +| +-|.-+-.+.+. .+.....+.++.|++ T Consensus 4 ~~~iv~i--GGGtGl~~~l~glk~--~~~~itaiVtv~Dd-GG-----ssG~l~~~l~~~---~~~~a~p~ai~AI~~-- 68 (210) T 2q7x_A 4 XPXITVI--GGGTGSPVILXSLRE--XDVEIAAIVTVADD-GG-----SSGELTGXIYPS---SDPLASRRVVQTILE-- 68 (210) T ss_dssp CCEEEEE--CCCTTHHHHHHHHHH--SSCEEEEEECCBSC-GG-----GGSSCCSEEEES---BSCCBCSHHHHHHHH-- T ss_pred CCEEEEE--CCCCCHHHHHHHHHH--CCCCEEEEEECCCC-CC-----CCEEHCEEEECC---CCCCCCHHHHHHHHH-- T ss_conf 8849998--785228999999850--99985999988408-85-----522127589915---488779999999961-- Q ss_pred CEEEEEE-E--EEEECCC Q ss_conf 3036431-1--2220572 Q gi|254780570|r 83 PDLICLA-G--YMRLLSR 97 (205) Q Consensus 83 ~Dliv~~-g--~~~il~~ 97 (205) .|+||+. | |..|+|. T Consensus 69 ADlIvlgPGSlyTSIiPn 86 (210) T 2q7x_A 69 SDXIVLGPGSLFTSILPN 86 (210) T ss_dssp CSEEEECSSCCCCCCHHH T ss_pred CCEEEECCCCCHHHHHHH T ss_conf 998999799607766678 No 116 >>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} (A:1-195,A:414-483) Probab=52.68 E-value=9.4 Score=18.52 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=22.4 Q ss_pred CCC-CEEEEEECCC-CHHHHHHHHHHHCCCCCCEE-EEEEEC Q ss_conf 986-6599997698-50189999999739998479-999976 Q gi|254780570|r 1 MIR-KNIVIFISGE-GTNMLSLIQATKKNDYPAEI-VGVFSD 39 (205) Q Consensus 1 M~k-~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI-~~Visn 39 (205) |++ +||+|+++|+ |+.+..++......-+..++ ..++.+ T Consensus 9 m~~~~KIaVIGaGs~G~alA~~la~~g~~Vi~~d~~~~~~~d 50 (265) T 1vjt_A 9 HHHHXKISIIGAGSVRFALQLVGDIAQTEELSREDTHIYXXD 50 (265) T ss_dssp --CCEEEEEETTTSHHHHHHHHHHHHHSTTTCSTTEEEEEEC T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 567429999996844352999999985175188878899988 No 117 >>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} (A:1-210) Probab=52.58 E-value=16 Score=16.91 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=40.5 Q ss_pred CCCEEEEEECCCCHHHH-HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 86659999769850189-99999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 2 IRKNIVIFISGEGTNML-SLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~-~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) .+.|+++. |.|.-.. .++..... .-.++++.|+. ......-..++.++++...... + ++ +.+.++. T Consensus 82 ~~irvgiI--G~G~~g~~~~~~~l~~-~~~~~ivav~d-~~~~~~~~~~~~~~~~~~~~~~--~---~d----~~ell~~ 148 (210) T 1h6d_A 82 RRFGYAIV--GLGKYALNQILPGFAG-CQHSRIEALVS-GNAEKAKIVAAEYGVDPRKIYD--Y---SN----FDKIAKD 148 (210) T ss_dssp CCEEEEEE--CCSHHHHHTHHHHTTT-CSSEEEEEEEC-SCHHHHHHHHHHTTCCGGGEEC--S---SS----GGGGGGC T ss_pred CCEEEEEE--ECHHHHHHHHHHHHHH-CCCCEEEEEEC-CCHHHHHHHHHHHCCCCCCCCC--C---CC----HHHHHCC T ss_conf 97179999--4869999999999972-98988999987-9999999999984899556755--5---99----9999559 Q ss_pred CCCEEEEEEE Q ss_conf 3430364311 Q gi|254780570|r 81 IQPDLICLAG 90 (205) Q Consensus 81 ~~~Dliv~~g 90 (205) .++|+|+.+. T Consensus 149 ~~vD~V~iat 158 (210) T 1h6d_A 149 PKIDAVYIIL 158 (210) T ss_dssp TTCCEEEECS T ss_pred CCCCEEEEEC T ss_conf 9998899919 No 118 >>2ez9_A Pyruvate oxidase; TPP enzyme, reaction intermediate analogue, oxidoreductase; HET: TDK FAD; 1.60A {Lactobacillus plantarum} (A:189-368,A:555-603) Probab=51.65 E-value=17 Score=16.81 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=51.2 Q ss_pred CHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCH-----------HHHHHHHCCCCC Q ss_conf 501899999997399984799999768888788899860895046301323322101-----------243210001234 Q gi|254780570|r 14 GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREH-----------EKAILMQLSSIQ 82 (205) Q Consensus 14 Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~-----------~~~l~~~l~~~~ 82 (205) ...++.+.+...+-+-+.=+++.-+.+......+.|++.|+|+..-...+-.-.+.. .....+.++ + T Consensus 11 ~~~Ie~a~elL~~AkrPvIi~G~g~~~a~~~l~~lae~~giPv~tt~~gkg~~pe~hP~~~G~~G~~~~~~~~~~i~--~ 88 (229) T 2ez9_A 11 VQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALA--Q 88 (229) T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHH--H T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCC--C T ss_conf 99998887766533698533444265899999999998699889740234334444333222322234313331022--3 Q ss_pred CEEEEEEEEEEEC--CCHHHH-CCCCCEEECCCCCCCC Q ss_conf 3036431122205--721321-0665423135322333 Q gi|254780570|r 83 PDLICLAGYMRLL--SRDFVE-SYKNKILNIHPSLLPL 117 (205) Q Consensus 83 ~Dliv~~g~~~il--~~~~l~-~~~~~~iN~HpslLP~ 117 (205) .|+|++.|....- +..+.. ..+.-.|+++|.-+-. T Consensus 89 aDlIL~iG~~l~~~~t~~~~~~~~k~I~Id~dp~~i~~ 126 (229) T 2ez9_A 89 ADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGK 126 (229) T ss_dssp CSEEEEESCCCTTTTTTTTTTTCSEEEEEESCGGGTTS T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC T ss_conf 20233200111123322222455555578899899455 No 119 >>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A* (A:1-117,A:229-290) Probab=51.48 E-value=17 Score=16.80 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=35.4 Q ss_pred CCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 665999976985--018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 3 RKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 3 k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) +..|+||=||-| |-++.|.+..- +.++. -+.|+...+ +|-... ..-..+-.++.+.+.+ T Consensus 24 ~~~IgifDSG~GGLtv~~~i~~~lP----~~~~i-y~~D~a~~P-------YG~ks~-------~~i~~~~~~~~~~l~~ 84 (179) T 2vvt_A 24 QEAIGLIDSGVGGLTVLKEALKQLP----NERLI-YLGDTARCP-------YGPRPA-------EQVVQFTWEMADFLLK 84 (179) T ss_dssp GSCEEEEESSSTTHHHHHHHHHHCT----TSCEE-EEECTTTCC-------CTTSCH-------HHHHHHHHHHHHHHHT T ss_pred CCCEEEEECCCCHHHHHHHHHHHCC----CCCEE-EEECCCCCC-------CCCCCH-------HHHHHHHHHHHHHHHH T ss_conf 9968999789688999999999789----99989-994488999-------898999-------9999999999999975 Q ss_pred CCCEEEEEE Q ss_conf 343036431 Q gi|254780570|r 81 IQPDLICLA 89 (205) Q Consensus 81 ~~~Dliv~~ 89 (205) .+++++|.| T Consensus 85 ~~~~~iViA 93 (179) T 2vvt_A 85 KRIKMLVIA 93 (179) T ss_dssp TTCSEEEEC T ss_pred CCCCCEEEE T ss_conf 388604762 No 120 >>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* (A:1-222,A:411-438) Probab=51.33 E-value=16 Score=16.97 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=48.3 Q ss_pred CCEEEEEEC--------------CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCC-- Q ss_conf 665999976--------------9850189999999739998479999976888878889986089504630132332-- Q gi|254780570|r 3 RKNIVIFIS--------------GEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYIS-- 66 (205) Q Consensus 3 k~riavl~S--------------G~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~-- 66 (205) ++||+++.. |.++-+..+.+...+. +++|..+.....+..........++.....+...... T Consensus 20 ~mkIl~i~~~~~p~~~~~~~~~GG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250) T 3c48_A 20 HMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ--GIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLS 97 (250) T ss_dssp CCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT--TCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSSCC T ss_pred CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCC T ss_conf 878999846536300059998678999999999999977--996999945898876330112697289980477623344 Q ss_pred ---------CCCHHHHHHHHCCCCCCEEEEEEEEEEECCCHH-HHCCCCC-EEECCCCCC Q ss_conf ---------210124321000123430364311222057213-2106654-231353223 Q gi|254780570|r 67 ---------RREHEKAILMQLSSIQPDLICLAGYMRLLSRDF-VESYKNK-ILNIHPSLL 115 (205) Q Consensus 67 ---------~~~~~~~l~~~l~~~~~Dliv~~g~~~il~~~~-l~~~~~~-~iN~HpslL 115 (205) .......+...++..++|+|.+.++.--+...+ ....+.+ ++-+|-... T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~ 157 (250) T 3c48_A 98 KEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAA 157 (250) T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 766578886532789999984279955999877422789988765048852542145443 No 121 >>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} (A:) Probab=51.09 E-value=17 Score=16.76 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=20.8 Q ss_pred CEEEEEECCCCHHH-----------------HHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 65999976985018-----------------9999999739998479999976888 Q gi|254780570|r 4 KNIVIFISGEGTNM-----------------LSLIQATKKNDYPAEIVGVFSDNSN 42 (205) Q Consensus 4 ~riavl~SG~Gsnl-----------------~~Il~~~~~~~~~~eI~~Visn~~d 42 (205) ...+||+.|.||=+ +-+++...+... .++..|+++..+ T Consensus 7 ~~aIILAaG~gtRl~~~~pK~ll~i~gkpli~~~i~~l~~~~~-~~~iiv~~~~~~ 61 (231) T 1vgw_A 7 NIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEA-VDLTVVVVSPED 61 (231) T ss_dssp EEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTT-CCEEEEECCTTC T ss_pred CEEEEECCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHHCC-CCCCEEECCCHH T ss_conf 0899976987522897998037179987699999999986253-232102215022 No 122 >>3hft_A WBMS, polysaccharide deacetylase involved in O- antigen biosynthesis; NP_886680.1, structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica} (A:) Probab=50.59 E-value=9.4 Score=18.51 Aligned_cols=49 Identities=8% Similarity=-0.096 Sum_probs=27.9 Q ss_pred ECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEE Q ss_conf 7698501899999997399984799999768888788899860895046 Q gi|254780570|r 10 ISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFP 58 (205) Q Consensus 10 ~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~ 58 (205) .|+.|-+.+++++++-+--..++...-=+=..+...+....+.||++.. T Consensus 100 ~~~~g~~~~~Vldy~L~i~P~a~s~RSHsl~~~s~Il~~~~ergi~~es 148 (257) T 3hft_A 100 AGAHAEGVQEILDRTLELAPGCVSVRSHSLVQATSILNXFGERRLRYDC 148 (257) T ss_dssp HSCCSCCHHHHHHHHHTTSTTCCEECCGGGCCCHHHHHHHHHTTCCEEC T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHCCCCEEE T ss_conf 4169899999999999875014321288624488899999984993661 No 123 >>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} (A:1-127) Probab=50.47 E-value=3.5 Score=21.49 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=17.4 Q ss_pred CCEEEEEEECCCCCHHHHHHH----HCCCCEEEEEC Q ss_conf 847999997688887888998----60895046301 Q gi|254780570|r 30 PAEIVGVFSDNSNAQGLVKAR----KEKVPTFPIPY 61 (205) Q Consensus 30 ~~eI~~Visn~~da~~l~~a~----~~~Ip~~~i~~ 61 (205) +-+.+.++|-|+-++|=..|+ ..|||+.++.- T Consensus 64 ~pDf~I~isPN~aaPGP~~ARE~l~~~giP~IvI~D 99 (127) T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREXLADSEYPAVIIGD 99 (127) T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEE T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECC T ss_conf 899899978998999957799998747998799758 No 124 >>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} (A:1-125) Probab=50.32 E-value=17 Score=16.68 Aligned_cols=71 Identities=11% Similarity=-0.001 Sum_probs=39.0 Q ss_pred CEEEEEECCCCHHHHHH-HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 65999976985018999-99997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 4 KNIVIFISGEGTNMLSL-IQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 4 ~riavl~SG~Gsnl~~I-l~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) .|+++. |.|.-.... +.+... .-.++++.|++.++. ..-..+++++++... .+ ..+.+...+ T Consensus 3 lrvgii--G~G~~~~~~~~~~~~~-~~~~~i~av~d~~~~-~~~~~~~~~~~~~~~------~~-------~~~l~~~~~ 65 (125) T 3f4l_A 3 INCAFI--GFGKSTTRYHLPYVLN-RKDSWHVAHIFRRHA-KPEEQAPIYSHIHFT------SD-------LDEVLNDPD 65 (125) T ss_dssp EEEEEE--CCSHHHHHHTHHHHTT-CTTTEEEEEEECSSC-CGGGGSGGGTTCEEE------SC-------THHHHTCTT T ss_pred EEEEEE--ECCHHHHHHHHHHHHC-CCCCEEEEEEECCHH-HHHHHHHHCCCCCEE------CC-------HHHHHCCCC T ss_conf 629999--3779999999999973-899759999989879-999999875998356------89-------999956999 Q ss_pred CEEEEEEEE Q ss_conf 303643112 Q gi|254780570|r 83 PDLICLAGY 91 (205) Q Consensus 83 ~Dliv~~g~ 91 (205) +|+++.+.. T Consensus 66 id~v~i~~~ 74 (125) T 3f4l_A 66 VKLVVVCTH 74 (125) T ss_dssp EEEEEECSC T ss_pred CCEEEECCC T ss_conf 889985043 No 125 >>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} (A:362-473,A:625-671) Probab=50.23 E-value=17 Score=16.67 Aligned_cols=124 Identities=16% Similarity=0.230 Sum_probs=54.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 98665999976985018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) |.+++++|..+|- +.|.+-+..- +..++|.+ +=-.+..++.-. ....+|... .+ ..+.......++. T Consensus 10 ~~~~~VaVIGaGp-AGL~aA~~la---~~G~~V~v-lEk~~~iGG~i~-~~~~ip~~~----~~---~~~l~~~~~~le~ 76 (159) T 1ps9_A 10 VQKKNLAVVGAGP-AGLAFAINAA---ARGHQVTL-FDAHSEIGGQFN-IAKQIPGKE----EF---YETLRYYRRMIEV 76 (159) T ss_dssp SSCCEEEEECCSH-HHHHHHHHHH---TTTCEEEE-EESSSSSCTTHH-HHTTSTTCT----TH---HHHHHHHHHHHHH T ss_pred CCCCEEEEECCCH-HHHHHHHHHH---HHCCCEEE-EEECCCCCCEEE-ECCCCCCCH----HH---HHHHHHHHHHHHH T ss_conf 4464599989747-7899999998---72176479-942154330573-213576412----45---6678999987552 Q ss_pred CCCEEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCC--CCCCCCCHHCCCCCCCCCCEEEEC Q ss_conf 343036431122205721321066542313532233324--442121000024653445303312 Q gi|254780570|r 81 IQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFP--GLHTHRRVLQSGIKITGCTVHMVT 143 (205) Q Consensus 81 ~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yr--G~~~~~~ai~~g~~~~G~TiH~v~ 143 (205) ...++.. ..-+.......+ ..+++.+|...+.+. |..| ++++..-.--+|-|+|.+- T Consensus 77 ~Gv~~~~----~~~v~~~~~~~~-~~vi~a~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 135 (159) T 1ps9_A 77 TGVTLKL----NHTVTADQLQAF-DETILASGIVPRTPPIDGQEP-NRALAQPLIDSGKTVHLIG 135 (159) T ss_dssp HTCEEEE----SCCCCSSSSCCS-SEEEECCCEEECCCCCBCEEE-CCTTHHHHHTTTCCEEECG T ss_pred HHCEEEE----ECCCCHHHCCCC-CCEEEECCCCCCCCCCCCCCC-CHHHHHHHHHCCCCEEEEC T ss_conf 2010421----012331110046-844983277556699888886-7899999997599899986 No 126 >>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A* (A:189-382) Probab=50.22 E-value=17 Score=16.67 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=34.2 Q ss_pred CCCEEEEEECCC-CHH-HHHHHHHHHCCCCCCEEEEEEEC--CCCC----HHHHHHHHCCCCEEEEECCC Q ss_conf 866599997698-501-89999999739998479999976--8888----78889986089504630132 Q gi|254780570|r 2 IRKNIVIFISGE-GTN-MLSLIQATKKNDYPAEIVGVFSD--NSNA----QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 2 ~k~riavl~SG~-Gsn-l~~Il~~~~~~~~~~eI~~Visn--~~da----~~l~~a~~~~Ip~~~i~~~~ 63 (205) ...|+++.+||+ .|. +..++... ..++.+|..+ .... ...+.++.++++...++..+ T Consensus 20 ~~~~v~v~~SGG~DS~v~l~l~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (194) T 2ywb_A 20 GKDRVLLAVSGGVDSSTLALLLAKA-----GVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKE 84 (194) T ss_dssp TTSEEEEEECSSHHHHHHHHHHHHH-----TCEEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH-----HHHEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECH T ss_conf 9860799833665547899999974-----3301799946886676508899986520682699997025 No 127 >>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia tunneling, enzyme, glutamine-amido transferase, ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium tuberculosis} (A:323-553) Probab=49.48 E-value=18 Score=16.59 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=34.4 Q ss_pred CCEEEEEECCC-CH-HHHHHHH-HHHCCCCCCEEEEEEECC------CC-CHHHHHHHHCCCCEEEEECCC Q ss_conf 66599997698-50-1899999-997399984799999768------88-878889986089504630132 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQ-ATKKNDYPAEIVGVFSDN------SN-AQGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~-~~~~~~~~~eI~~Visn~------~d-a~~l~~a~~~~Ip~~~i~~~~ 63 (205) ++|++|.+||+ .| .+..++. .............+.+.. ++ ..+-..|+++|++.++.+..+ T Consensus 39 ~~kv~v~~SGG~DS~vl~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lgi~~~~~~~~~ 109 (231) T 3dla_A 39 YPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFATGEHTKNNAIKLARALGVTFSEIDIGD 109 (231) T ss_dssp SCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC-----CTHHHHHHHHHHHTCEEEECCCHH T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH T ss_conf 65144322245430688999998632124776534887402243331208889866514444321114178 No 128 >>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli K12} (A:152-285) Probab=49.14 E-value=18 Score=16.55 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=57.2 Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHCCCC-CCEEEEEEE--CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 66599997698-5018999999973999-847999997--6888878889986089504630132332210124321000 Q gi|254780570|r 3 RKNIVIFISGE-GTNMLSLIQATKKNDY-PAEIVGVFS--DNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 3 k~riavl~SG~-Gsnl~~Il~~~~~~~~-~~eI~~Vis--n~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) .+|+++..-.+ +.-+.+++.... .+ ..++.++.- -.++...++.|++.|..+.....- .+.+ T Consensus 3 g~~i~~vGD~~~~rv~~Sl~~~~~--~l~g~~v~l~~P~~~~~~~~~~~~~~~~g~~i~~~~d~------------~~a~ 68 (134) T 3csu_A 3 NLHVAMVGDLKYGRTVHSLTQALA--KFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSI------------EEVM 68 (134) T ss_dssp SCEEEEESCTTTCHHHHHHHHHHH--TSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCG------------GGTT T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCH------------HHCC T ss_conf 875899953766733899999986--35677699969861254134320010012433321103------------3215 Q ss_pred CCCCCEEEEEEEE--E-------------EECCCHHHHCCCCCEEECCCCCCCCC Q ss_conf 1234303643112--2-------------20572132106654231353223332 Q gi|254780570|r 79 SSIQPDLICLAGY--M-------------RLLSRDFVESYKNKILNIHPSLLPLF 118 (205) Q Consensus 79 ~~~~~Dliv~~g~--~-------------~il~~~~l~~~~~~~iN~HpslLP~y 118 (205) + +.|+|..-.| + ..+..++++..+..++=+|| ||+. T Consensus 69 ~--~aDviyt~~w~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmH~--LPRg 119 (134) T 3csu_A 69 A--EVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP--LPRV 119 (134) T ss_dssp T--TCSEEEECC-----------------CCBCGGGGTTCCTTCEEECC--SCCS T ss_pred C--CCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEC--CCCC T ss_conf 6--7754531143022201000345677776239999627999499628--9997 No 129 >>1gso_A Protein (glycinamide ribonucleotide synthetase); GAR-SYN, ATP-grAsp, purine de novo biosynthetic pathway, substrate channeling, ligase; 1.60A {Escherichia coli} (A:1-120,A:193-431) Probab=48.95 E-value=6.1 Score=19.83 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=38.8 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 65999976985018999999973999847999997688887888998608950463013233221012432100012343 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) |||.|+ |+|--...++.+.+ ++++.+..+.++.+++.....|.. +...++.+ -+.+.+..++.++ T Consensus 3 ~kvli~--g~G~~~~~~~~aa~--~~g~~~~v~~~~~~~~~~~~~a~~----~~~~~~~d-------~~~i~~~~~~~~~ 67 (359) T 1gso_A 3 MKVLVI--GNGGREHALAWKAA--QSPLVETVFVAPGNAGTALEPALQ----NVAIGVTD-------IPALLDFAQNEKI 67 (359) T ss_dssp EEEEEE--ECSHHHHHHHHHHT--TCTTEEEEEEEECCHHHHHSTTEE----ECCCCTTC-------HHHHHHHHHHTTC T ss_pred CEEEEE--CCCHHHHHHHHHHH--HCCCCCEEEEECCCHHHCCCCCCE----EEEECCCC-------HHHHHHHHHHHCC T ss_conf 789998--92999999999998--689988899978981436646341----78868999-------9999999999697 Q ss_pred EEEEEEEEEEECCCHHH Q ss_conf 03643112220572132 Q gi|254780570|r 84 DLICLAGYMRLLSRDFV 100 (205) Q Consensus 84 Dliv~~g~~~il~~~~l 100 (205) |.++. ||..+....+. T Consensus 68 d~v~~-~~~~~~~~~~~ 83 (359) T 1gso_A 68 DLTIV-GPEAPLVKGVV 83 (359) T ss_dssp SEEEE-CSHHHHHTTHH T ss_pred CEEEE-CCCHHHHHHHH T ss_conf 99998-97188888999 No 130 >>2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} (A:) Probab=48.70 E-value=18 Score=16.51 Aligned_cols=79 Identities=14% Similarity=0.022 Sum_probs=46.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCC--HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 6599997698501899999997399984799999768888--78889986089504630132332210124321000123 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNA--QGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da--~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .++.-++.|.|..+..+.+. ..++.+|=- .+.. ...+.++..+++...+...+. .+..... T Consensus 33 ~~VLDiGcG~G~~~~~la~~------g~~v~gvD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 95 (199) T 2i6g_A 33 GRTLDLGCGNGRNSLYLAAN------GYDVTAWDX-NPASXANLERIXAAEGLDNLQTDLVDL----------NTLTFDG 95 (199) T ss_dssp CEEEEETCTTSHHHHHHHHT------TCEEEEEES-CHHHHHHHHHHHHHTTCTTEEEEECCT----------TTCCCCC T ss_pred CCEEEECCCCCHHHHHHHHC------CCCEECCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCC----------CCCCCCC T ss_conf 97899838887889999873------872232559-999999999852213765101223442----------2355445 Q ss_pred CCEEEEEEEEEEECCCHH Q ss_conf 430364311222057213 Q gi|254780570|r 82 QPDLICLAGYMRLLSRDF 99 (205) Q Consensus 82 ~~Dliv~~g~~~il~~~~ 99 (205) ..|+|++.+-..-++++- T Consensus 96 ~fD~V~~~~~~~~~~~~~ 113 (199) T 2i6g_A 96 EYDFILSTVVXXFLEAQT 113 (199) T ss_dssp CEEEEEEESCGGGSCTTH T ss_pred CEEEEEEEEEEEECCHHH T ss_conf 146999822676088889 No 131 >>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} (A:1-170,A:362-381) Probab=48.64 E-value=18 Score=16.50 Aligned_cols=41 Identities=17% Similarity=0.064 Sum_probs=24.1 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCC Q ss_conf 9866599997698501899999997399984799999768888 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNA 43 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da 43 (205) |.+.|++|+. .+|-.-..|++.. .+...++++.+.+++..+ T Consensus 17 M~~~kVaIiG-ATGyvG~ELirlL-~~HP~~ei~~l~aS~~sa 57 (190) T 3hsk_A 17 MSVKKAGVLG-ATGSVGQRFILLL-SKHPEFEIHALGASSRSA 57 (190) T ss_dssp -CCEEEEEET-TTSHHHHHHHHHH-TTCSSEEEEEEEECTTTT T ss_pred CCCCEEEEEC-CHHHHHHHHHHHH-HCCCCCEEEEEEECCCCC T ss_conf 7601799999-7009999999999-659997168998747658 No 132 >>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} (A:1-170,A:380-450) Probab=48.43 E-value=19 Score=16.48 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=18.8 Q ss_pred CCCCEEEEEECCC-CHHHHHHHHHHHC-CCCCCEEEEE Q ss_conf 9866599997698-5018999999973-9998479999 Q gi|254780570|r 1 MIRKNIVIFISGE-GTNMLSLIQATKK-NDYPAEIVGV 36 (205) Q Consensus 1 M~k~riavl~SG~-Gsnl~~Il~~~~~-~~~~~eI~~V 36 (205) |.++||+|++.|+ |+.+ ++.-+... .....+|+++ T Consensus 3 M~~~KIaVIGaGsvG~~l-a~~~~~~~~~~~~~eV~l~ 39 (241) T 3fef_A 3 LDQIKIAYIGGGSQGWAR-SLXSDLSIDERXSGTVALY 39 (241) T ss_dssp CCCEEEEEETTTCSSHHH-HHHHHHHHCSSCCEEEEEE T ss_pred CCCCEEEEECCCHHHHHH-HHHHHHHHCCCCCCEEEEE T ss_conf 778779999977478899-9999997345668829998 No 133 >>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 4skn_E* 1okb_A (A:) Probab=47.81 E-value=7.5 Score=19.19 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=33.2 Q ss_pred CCHHHHHHHHCCCCCCEEEEEEEEEEECC--CHHHHCCCCCEE-ECCCCCCCCCCCC Q ss_conf 10124321000123430364311222057--213210665423-1353223332444 Q gi|254780570|r 68 REHEKAILMQLSSIQPDLICLAGYMRLLS--RDFVESYKNKIL-NIHPSLLPLFPGL 121 (205) Q Consensus 68 ~~~~~~l~~~l~~~~~Dliv~~g~~~il~--~~~l~~~~~~~i-N~HpslLP~yrG~ 121 (205) +.+.+.+++.|.+.+..+|++. |+..-. ..+++..+..++ --|||.|-.+||. T Consensus 142 e~ft~~ii~~l~~~~~~iVf~L-wG~~A~~~~~~i~~~~h~il~~~HPSpls~~~~F 197 (223) T 3fci_A 142 EQFTDAVVSWLNQNSNGLVFLL-WGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGF 197 (223) T ss_dssp HHHHHHHHHHHHHHCCSCEEEE-ESHHHHHHTTTCCTTTSEEEEECCSSTTTGGGTT T ss_pred HHHHHHHHHHHHCCCCCEEEEE-HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC T ss_conf 9999999999866477839874-3877999987515789869980699820237898 No 134 >>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* (A:1-197,A:367-406) Probab=47.57 E-value=14 Score=17.42 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=56.5 Q ss_pred CCEEEEEECCC-----C--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCC----CCHH Q ss_conf 66599997698-----5--01899999997399984799999768888788899860895046301323322----1012 Q gi|254780570|r 3 RKNIVIFISGE-----G--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISR----REHE 71 (205) Q Consensus 3 k~riavl~SG~-----G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~----~~~~ 71 (205) ++||+++.+.. | +-+..+++..... ++++..+....++... ......+++...++....... ..+- T Consensus 20 ~MkIl~v~~~~~~~~gG~~~~~~~l~~~L~~~--G~eV~vi~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 96 (237) T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA--GHEVSVLAPASPHVKL-PDYVVSGGKAVPIPYNGSVARLRFGPATH 96 (237) T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT--TCEEEEEESCCTTSCC-CTTEEECCCCC------------CCHHHH T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCC-CCCEECCCEEEECCCCCCHHHHHCCHHHH T ss_conf 98899989986899988999999999999977--9989999418988777-63032372699815676312220358999 Q ss_pred HHHHHHCCCCCCEEEEEEEEEEECCCHHHH-CCCCC-EEECCCCCCCCCC Q ss_conf 432100012343036431122205721321-06654-2313532233324 Q gi|254780570|r 72 KAILMQLSSIQPDLICLAGYMRLLSRDFVE-SYKNK-ILNIHPSLLPLFP 119 (205) Q Consensus 72 ~~l~~~l~~~~~Dliv~~g~~~il~~~~l~-~~~~~-~iN~HpslLP~yr 119 (205) ..+.+.+++.++|+|.+..+..-+...++. ..+.. ++..|....+..+ T Consensus 97 ~~l~~~l~~~~~DiI~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~ 146 (237) T 2gek_A 97 RKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLT 146 (237) T ss_dssp HHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCSHHH T ss_pred HHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCCC T ss_conf 99999998607763688640332024667875289852144210124444 No 135 >>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.50A {Geobacter metallireducens gs-15} (A:1-177) Probab=47.56 E-value=19 Score=16.39 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=18.2 Q ss_pred CCCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 866599997698-50189999999739998479999 Q gi|254780570|r 2 IRKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGV 36 (205) Q Consensus 2 ~k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~V 36 (205) |++||+|+.+|+ |+.+-..+- +. .+++..+ T Consensus 1 M~mkI~iiG~G~mG~~la~~L~---~~--g~~V~~~ 31 (177) T 3hn2_A 1 MSLRIAIVGAGALGLYYGALLQ---RS--GEDVHFL 31 (177) T ss_dssp ---CEEEECCSTTHHHHHHHHH---HT--SCCEEEE T ss_pred CCCEEEEECCCHHHHHHHHHHH---HC--CCCEEEE T ss_conf 9988999895999999999998---46--9945999 No 136 >>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} (A:1-215) Probab=47.49 E-value=19 Score=16.38 Aligned_cols=60 Identities=7% Similarity=0.117 Sum_probs=32.5 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCCCC---------HHHHHHHHCCCCEEEEECCC Q ss_conf 66599997698-50-1899999997399984799999768888---------78889986089504630132 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNSNA---------QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~da---------~~l~~a~~~~Ip~~~i~~~~ 63 (205) ..|++|.+||+ .| .+..++..... +.......+..+.... .....|+..|||...++..+ T Consensus 18 ~~kv~v~~SGG~DS~v~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 88 (215) T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRD-EWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDV 88 (215) T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHH-TTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCC T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-HCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 39899998080999999999999889-739819999966899997669999999999998499189999874 No 137 >>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83} (A:1-126,A:258-289) Probab=46.80 E-value=20 Score=16.31 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=24.4 Q ss_pred CC-CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 98-665999976985018999999973999847999997688 Q gi|254780570|r 1 MI-RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 1 M~-k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) || +.|+++. |.|+-....+.++.... +++++.|....+ T Consensus 6 m~~~irVgII--G~G~~g~~~l~~l~~~~-~~eivav~d~~~ 44 (158) T 3bio_A 6 DDKKIRAAIV--GYGNIGRYALQALREAP-DFEIAGIVRRNP 44 (158) T ss_dssp --CCEEEEEE--CCSHHHHHHHHHHHHCT-TEEEEEEECC-- T ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHCCC-CCEEEEEECCCH T ss_conf 6998569998--98899999999996499-938999989898 No 138 >>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* (A:175-354) Probab=46.59 E-value=20 Score=16.29 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=48.5 Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEEEC----CCCCHHHHHHHHCCCCEEEEECCCCCCCCCH-----------HHHHHH Q ss_conf 9850189999999739998479999976----8888788899860895046301323322101-----------243210 Q gi|254780570|r 12 GEGTNMLSLIQATKKNDYPAEIVGVFSD----NSNAQGLVKARKEKVPTFPIPYKDYISRREH-----------EKAILM 76 (205) Q Consensus 12 G~Gsnl~~Il~~~~~~~~~~eI~~Visn----~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~-----------~~~l~~ 76 (205) +..+.++.+.+...+-+- . ++++. +......++|++.|+|+..-......-.+.+ .....+ T Consensus 12 ~~~~~i~~~~~~L~~Ak~---P-vii~G~g~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~G~~g~~~~~~~~~ 87 (180) T 3eya_A 12 PEEEELRKLAQLLRYSSN---I-ALMCGSGCAGAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFH 87 (180) T ss_dssp CCHHHHHHHHHHHHTCCS---E-EEEECGGGTTCHHHHHHHHHHHTCCEEECGGGHHHHSSSCTTBCCCCSTTSCHHHHH T ss_pred CCHHHHHHHHHHHHCCCC---E-EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 248999999998640465---0-899446543048999986764148743234433234567763212233333310011 Q ss_pred HCCCCCCEEEEEEEEEEECCCHHHHCC--CCCEEECCCCCCC Q ss_conf 001234303643112220572132106--6542313532233 Q gi|254780570|r 77 QLSSIQPDLICLAGYMRLLSRDFVESY--KNKILNIHPSLLP 116 (205) Q Consensus 77 ~l~~~~~Dliv~~g~~~il~~~~l~~~--~~~~iN~HpslLP 116 (205) .++ +.|+|+..|.. ++......+ +.-.||..|+-+. T Consensus 88 ~l~--~aDlil~iG~~--~~~~~~~~~~~~~i~i~~~~~~~~ 125 (180) T 3eya_A 88 TMM--NADTLVLLGTQ--FPYRAFYPTDAKIIQIDINPASIG 125 (180) T ss_dssp HHH--HCSEEEEESCC--CCCGGGSCSSSEEEEEESCGGGTT T ss_pred EEE--CCCCEEEEEEE--CCCCCCCCCCCCEEEEECCHHHHC T ss_conf 021--24423798640--365455677671899979989947 No 139 >>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Nostoc SP} PDB: 2klb_A (A:) Probab=46.42 E-value=20 Score=16.27 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=11.5 Q ss_pred CCCCEEEEE-ECCCCHH Q ss_conf 986659999-7698501 Q gi|254780570|r 1 MIRKNIVIF-ISGEGTN 16 (205) Q Consensus 1 M~k~riavl-~SG~Gsn 16 (205) |..+|+.|+ +|++|+. T Consensus 2 ~~~~kilI~Y~S~tG~T 18 (159) T 3fni_A 2 KAETSIGVFYVSEYGYS 18 (159) T ss_dssp CCCCEEEEEECTTSTTH T ss_pred CCCCEEEEEEECCCCHH T ss_conf 98888999999999729 No 140 >>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} (A:1-234) Probab=45.83 E-value=20 Score=16.21 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=35.5 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCC---CC-----HHHHHHHHCCCCEEEEECCC Q ss_conf 66599997698-50-18999999973999847999997688---88-----78889986089504630132 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNS---NA-----QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~---da-----~~l~~a~~~~Ip~~~i~~~~ 63 (205) ..|++|.+||+ .| .+..++...........+..+..+.. .+ ..-..|.+++||.+.++... T Consensus 13 ~~kvvv~~SGG~DS~~ll~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 83 (234) T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQL 83 (234) T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 98399998281999999999999897589981999998298895559999999999997499789999963 No 141 >>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase); archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrogenase; 2.05A {Sulfolobus solfataricus} (O:1-138,O:303-340) Probab=45.42 E-value=21 Score=16.17 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=35.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 6599997698501899999997399984799999768888788899860895046301 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY 61 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~ 61 (205) .|+++. |.|.--+.++.+..... +.+++.|.+.+++ .....+++.+++...... T Consensus 2 IrVgIi--G~G~iG~~~~~al~~~~-~~eivav~d~~~~-~~~~~a~~~~~~~~~~~~ 55 (176) T 1b7g_O 2 VNVAVN--GYGTIGKRVADAIIKQP-DMKLVGVAKTSPN-YEAFIAHRRGIRIYVPQQ 55 (176) T ss_dssp EEEEEE--CCSHHHHHHHHHHHTCT-TEEEEEEECSSCS-HHHHHHHHTTCCEECCGG T ss_pred EEEEEE--CCCHHHHHHHHHHHHCC-CCEEEEEECCCCC-HHHHHHHHCCCEEEECCC T ss_conf 099997--58888999999997189-9789999779987-879988667998998898 No 142 >>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} (A:1-217) Probab=45.33 E-value=21 Score=16.16 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=32.3 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEE-EEEECCCCC-------HHHHHHHHCCCCEEEEECCC Q ss_conf 66599997698-50-1899999997399984799-999768888-------78889986089504630132 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIV-GVFSDNSNA-------QGLVKARKEKVPTFPIPYKD 63 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~-~Visn~~da-------~~l~~a~~~~Ip~~~i~~~~ 63 (205) +.|++|.+||+ .| .+..++...........+. ..+.+.... ...+.|+.+|||.+.++..+ T Consensus 24 ~~~vvv~~SGG~DS~~~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 94 (217) T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDV 94 (217) T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCH T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 69699998081999999999999998779982999997289996559999999999997220001212211 No 143 >>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} (A:223-374) Probab=44.76 E-value=21 Score=16.11 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=27.8 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 665999976985-018999999973999847999997688 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) .+++++++.|.| +-+.++++..........+.++++.+. T Consensus 5 ~~~ivliagG~GitP~~s~l~~~~~~~~~~~~~l~~~~~~ 44 (152) T 1ddg_A 5 ETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPH 44 (152) T ss_dssp TSCEEEECCGGGGHHHHHHHHHHHHHTCCSCEEEEEEESC T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 6657999368672379999999997168984899973486 No 144 >>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} (A:254-396) Probab=44.32 E-value=21 Score=16.06 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=29.4 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 665999976985-018999999973999847999997688 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) .+++++++.|.| +-+.++++...+.+.+.++.++.+.+. T Consensus 6 ~~~iiliAgGtGIaP~~s~l~~~~~~~~~~~i~l~~~~r~ 45 (143) T 1gvh_A 6 DTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAEN 45 (143) T ss_dssp TCCEEEEEEGGGGHHHHHHHHHHHHHTCCSCEEEEEEESC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC T ss_conf 8748999678866706899999987303443043024578 No 145 >>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} (A:1-176,A:286-480) Probab=44.15 E-value=21 Score=16.04 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=22.5 Q ss_pred CCCCEEEEEECCC-CHHHHHHHHHHHC-CCCCCEEEEEEEC Q ss_conf 9866599997698-5018999999973-9998479999976 Q gi|254780570|r 1 MIRKNIVIFISGE-GTNMLSLIQATKK-NDYPAEIVGVFSD 39 (205) Q Consensus 1 M~k~riavl~SG~-Gsnl~~Il~~~~~-~~~~~eI~~Visn 39 (205) |.++||+|++.|+ |+.+..++..... .....+|+++=.| T Consensus 1 Mk~~KI~IIGaGsvG~~la~~la~~~~~~~~~~eV~l~Did 41 (371) T 1obb_A 1 MPSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDID 41 (371) T ss_dssp -CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSC T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 99766999998732316999999984657899989998698 No 146 >>3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A (A:1-149) Probab=44.12 E-value=21 Score=16.04 Aligned_cols=93 Identities=19% Similarity=0.116 Sum_probs=47.8 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCC-HHHHHHHHCCCCEEEE-ECCCCCCCCCHHHHHHHHCCCC Q ss_conf 6599997698501899999997399984799999768888-7888998608950463-0132332210124321000123 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNA-QGLVKARKEKVPTFPI-PYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da-~~l~~a~~~~Ip~~~i-~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .++.=+++|+|..+..+.+. ..++.+|--+..-. ...++++..++...+. -..+ ........ T Consensus 48 ~~vLdiGcG~G~~~~~la~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~v~~~~~~----------~~~~~~~~ 111 (149) T 3b3f_A 48 KIVLDVGCGSGILSFFAAQA------GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGK----------VEEVSLPE 111 (149) T ss_dssp CEEEEESCTTSHHHHHHHHT------TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESC----------TTTCCCSS T ss_pred CEEEEECCCCCHHHHHHHHC------CCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEE----------CCCCCCCC T ss_conf 98999548756999999976------998899992989999999999986999724899976----------32123466 Q ss_pred CCEEEEEEEEEEECCC-HHHHCCCCCEEECCCCCCC Q ss_conf 4303643112220572-1321066542313532233 Q gi|254780570|r 82 QPDLICLAGYMRLLSR-DFVESYKNKILNIHPSLLP 116 (205) Q Consensus 82 ~~Dliv~~g~~~il~~-~~l~~~~~~~iN~HpslLP 116 (205) +.|+|++.+-+..++. +....+ -++|..|=| T Consensus 112 ~fD~I~~~~~l~~~~~~~~~~~l----~~~~~~Lkp 143 (149) T 3b3f_A 112 QVDIIISEPMGYMLFNERMLESY----LHAKKYLKP 143 (149) T ss_dssp CEEEEECCCCBTTBTTTSHHHHH----HHGGGGEEE T ss_pred CCCEEEEECHHHHCCCCHHHHHH----HHHHHHCCC T ss_conf 64479973003222440157899----999862699 No 147 >>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 2g6a_A* 2g65_A* 2g6c_A* 2g68_A* (A:188-324) Probab=43.67 E-value=11 Score=17.92 Aligned_cols=99 Identities=8% Similarity=0.006 Sum_probs=47.5 Q ss_pred CEEEEEECC-CCHHHHHHHHHHHCCCCCCEEEEEEEC---CCCCHHH----HHHHHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 659999769-850189999999739998479999976---8888788----89986089504630132332210124321 Q gi|254780570|r 4 KNIVIFISG-EGTNMLSLIQATKKNDYPAEIVGVFSD---NSNAQGL----VKARKEKVPTFPIPYKDYISRREHEKAIL 75 (205) Q Consensus 4 ~riavl~SG-~Gsnl~~Il~~~~~~~~~~eI~~Visn---~~da~~l----~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~ 75 (205) .++++.+-+ +|..+.+++..... ++.++..+.+- .|+...+ +.+++.|..+...+. +. T Consensus 8 l~ia~vGD~~~~rv~~Sl~~~~~~--~g~~~~~~~pp~~~~p~~~~~~~a~~~~~~~g~~i~~~~d------------~~ 73 (137) T 1zq6_A 8 LTWTYHPKPLNTAVANSALTIATR--MGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHD------------ID 73 (137) T ss_dssp EEECCCSSCCCSHHHHHHHHHHHH--TTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECC------------HH T ss_pred EEEECCCCCCCCHHHHHHHHHHHH--HCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC------------HH T ss_conf 985104774333899888898774--1562478447623577889999887777761576189717------------77 Q ss_pred HHCCCCCCEEEEEEEE--EE------------------ECCCHHHHCCCCCEEECCCCCCCCCCCC Q ss_conf 0001234303643112--22------------------0572132106654231353223332444 Q gi|254780570|r 76 MQLSSIQPDLICLAGY--MR------------------LLSRDFVESYKNKILNIHPSLLPLFPGL 121 (205) Q Consensus 76 ~~l~~~~~Dliv~~g~--~~------------------il~~~~l~~~~~~~iN~HpslLP~yrG~ 121 (205) +.++ +.|+|..-.| ++ .+..++++.-+. ++=+|| ||.+||. T Consensus 74 eav~--~aDviy~~~wq~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~d-~~~mH~--LP~~Rg~ 134 (137) T 1zq6_A 74 SAYA--GADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNN-GVFSHC--LPLRRNV 134 (137) T ss_dssp HHHT--TCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHHTSSS-CEEECC--SCCCBTT T ss_pred HHHC--CCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCCCC-CEEECC--CCCCCCC T ss_conf 8724--87799964067532143113569999987635837999636899-899899--9999988 No 148 >>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:1-93,A:210-255) Probab=43.46 E-value=22 Score=15.97 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=34.8 Q ss_pred CEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 65999976985--0189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 4 KNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 4 ~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) ++|+||=||-| |-++.|.+. ....++.. +.|+..++ +|-... ..-..+-.++.+.+.+. T Consensus 1 mpIGVFDSGiGGLTVlk~i~k~----lP~~~~IY-~aD~a~~P-------YG~Ks~-------eeI~~~~~~iv~~L~~~ 61 (139) T 2jfz_A 1 MKIGVFDSGVGGFSVLKSLLKA----RLFDEIIY-YGDSARVP-------YGTKDP-------TTIKQFGLEALDFFKPH 61 (139) T ss_dssp CEEEEEESSSTTHHHHHHHHHT----TCCSEEEE-EECTTTCC-------CTTSCH-------HHHHHHHHHHHHHHGGG T ss_pred CEEEEEECCCCHHHHHHHHHHH----CCCCCEEE-EECCCCCC-------CCCCCH-------HHHHHHHHHHHHHHHHC T ss_conf 9799994897679999999997----89999899-95378899-------899999-------99999999999987633 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) +++++|.| T Consensus 62 ~vk~IVIA 69 (139) T 2jfz_A 62 EIELLIVA 69 (139) T ss_dssp CCSCEEEC T ss_pred CCCEEEEE T ss_conf 65678870 No 149 >>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis} (A:1-99,A:212-276) Probab=43.38 E-value=22 Score=15.96 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=37.1 Q ss_pred CCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 665999976985--018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 3 RKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 3 k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) +..|+||=||-| |-+++|.+.. ...++.. +-|+. +.|+=. +....-..+-.++.+.+.+ T Consensus 7 ~~~IgifDSG~GGltv~~~i~~~l----P~~~~iY-~~D~~-----------~~PYG~---k~~~~i~~~~~~~~~~l~~ 67 (164) T 2dwu_A 7 HSVIGVLDSGVGGLTVASEIIRQL----PKESICY-IGDNE-----------RCPYGP---RSVEEVQSFVFEMVEFLKQ 67 (164) T ss_dssp CCEEEEEESSSTTHHHHHHHHHHC----TTSCEEE-EECGG-----------GCCCTT---SCHHHHHHHHHHHHHHHTT T ss_pred CCEEEEEECCCCHHHHHHHHHHHC----CCCCEEE-EECCC-----------CCCCCC---CCHHHHHHHHHHHHHHHHH T ss_conf 990899948963899999999978----9998899-95278-----------899888---9999999999999999862 Q ss_pred CCCEEEEEE Q ss_conf 343036431 Q gi|254780570|r 81 IQPDLICLA 89 (205) Q Consensus 81 ~~~Dliv~~ 89 (205) .+++++|.| T Consensus 68 ~~~~~iViA 76 (164) T 2dwu_A 68 FPLKALVVA 76 (164) T ss_dssp SCEEEEEEC T ss_pred CCCCEEEEE T ss_conf 577689995 No 150 >>3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} (A:1-159) Probab=43.28 E-value=22 Score=15.95 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=42.8 Q ss_pred CCEEEEEECCCCH--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHH----HHHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 6659999769850--189999999739998479999976888878889----9860895046301323322101243210 Q gi|254780570|r 3 RKNIVIFISGEGT--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVK----ARKEKVPTFPIPYKDYISRREHEKAILM 76 (205) Q Consensus 3 k~riavl~SG~Gs--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~----a~~~~Ip~~~i~~~~~~~~~~~~~~l~~ 76 (205) ..++ +| |.|. .+-.+++.. +.+=++|+|+..-....++ .++.++..+ +........+.-.++.+ T Consensus 12 p~~i-~~--g~g~~~~l~~~l~~~-----g~~~~livtd~~~~~~~~~v~~~l~~~~~~~~--~~~~~~~~~~~v~~~~~ 81 (159) T 3hl0_A 12 PARI-VF--SAGSSADVAEEIRRL-----GLSRALVLSTPQQKGDAEALASRLGRLAAGVF--SEAAXHTPVEVTKTAVE 81 (159) T ss_dssp CCCE-EE--CTTGGGGHHHHHHHT-----TCCCEEEECCGGGHHHHHHHHHHHGGGEEEEE--CCCCTTCBHHHHHHHHH T ss_pred CCEE-EE--CCCHHHHHHHHHHHC-----CCCEEEEEECCCCCCHHHHHHHHHHCCCCEEE--ECCCCCCCHHHHHHHHH T ss_conf 8228-98--969999999999973-----99869999784221479999998606882899--62616999899999999 Q ss_pred HCCCCCCEEEEEEEEEEEC Q ss_conf 0012343036431122205 Q gi|254780570|r 77 QLSSIQPDLICLAGYMRLL 95 (205) Q Consensus 77 ~l~~~~~Dliv~~g~~~il 95 (205) ..++.++|.|+..|=+.++ T Consensus 82 ~~~~~~~d~iiaiGGGsvi 100 (159) T 3hl0_A 82 AYRAAGADCVVSLGGGSTT 100 (159) T ss_dssp HHHHTTCSEEEEEESHHHH T ss_pred HHHHCCCCEEEEECCCCCH T ss_conf 9996399889995897511 No 151 >>1vkf_A Glycerol uptake operon antiterminator-related protein; TM1436, structural genomics, JCSG, PSI, protein structure initiative; HET: CIT; 1.65A {Thermotoga maritima MSB8} (A:) Probab=43.20 E-value=22 Score=15.95 Aligned_cols=93 Identities=15% Similarity=0.296 Sum_probs=47.5 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCC-----------------------CEEEEEEECCCCCHHHHHHHHCCCCEEEEE Q ss_conf 659999769850189999999739998-----------------------479999976888878889986089504630 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYP-----------------------AEIVGVFSDNSNAQGLVKARKEKVPTFPIP 60 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~-----------------------~eI~~Visn~~da~~l~~a~~~~Ip~~~i~ 60 (205) -++++|-.|.=.++..+++.+++..-. +.+.++||-+ +..+.+|++.|+.+.. T Consensus 32 ~~~ifll~g~I~~L~~~v~~lk~~gK~vfVHiDli~GL~~D~~ai~fLk~~~~dGIISTk--~~~i~~Ak~~gl~tIq-- 107 (188) T 1vkf_A 32 PDVVFLLKSDILNLKFHLKILKDRGKTVFVDXDFVNGLGEGEEAILFVKKAGADGIITIK--PKNYVVAKKNGIPAVL-- 107 (188) T ss_dssp SSEEEECCEETTTHHHHHHHHHHTTCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEESC--HHHHHHHHHTTCCEEE-- T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECC--HHHHHHHHHCCCEEEE-- T ss_conf 999999568488899999999986998999865167778887999999975999999788--9999999977992898-- Q ss_pred CCCC-CCCCCHHHHHHHHCCCCCCEEE-EEEEEEEECCCHHHHCCCC Q ss_conf 1323-3221012432100012343036-4311222057213210665 Q gi|254780570|r 61 YKDY-ISRREHEKAILMQLSSIQPDLI-CLAGYMRLLSRDFVESYKN 105 (205) Q Consensus 61 ~~~~-~~~~~~~~~l~~~l~~~~~Dli-v~~g~~~il~~~~l~~~~~ 105 (205) +-| .+...++. -.+.+++.+||.| ++=| ++++.+++.... T Consensus 108 -RiFliDS~al~~-~~~~i~~~~PD~IEilPG---~~~~~ii~~~~~ 149 (188) T 1vkf_A 108 -RFFALDSKAVER-GIEQIETLGVDVVEVLPG---AVAPKVARKIPG 149 (188) T ss_dssp -EEECCSHHHHHH-HHHHHHHHTCSEEEEESG---GGHHHHHTTSTT T ss_pred -EEEEEEHHHHHH-HHHHHHHCCCCEEEECCH---HHHHHHHHHCCC T ss_conf -765452778999-999985369999998653---417999986259 No 152 >>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} (A:1-188) Probab=43.16 E-value=22 Score=15.94 Aligned_cols=81 Identities=7% Similarity=-0.111 Sum_probs=47.7 Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEEECCCC--C----HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEE Q ss_conf 9850189999999739998479999976888--8----788899860895046301323322101243210001234303 Q gi|254780570|r 12 GEGTNMLSLIQATKKNDYPAEIVGVFSDNSN--A----QGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDL 85 (205) Q Consensus 12 G~Gsnl~~Il~~~~~~~~~~eI~~Visn~~d--a----~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dl 85 (205) |.|. +..+-+.+. +++..-++|++++.- . ...+..++.++++..+..-......+.-.++.+..++.++|. T Consensus 25 G~g~-l~~l~~~l~--~~g~~~vlivt~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~t~~~v~~~~~~~~~~~~d~ 101 (188) T 1o2d_A 25 GEKI-LEKRGNIID--LLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVXKAVERYRNDSFDF 101 (188) T ss_dssp STTH-HHHHGGGGG--GTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSE T ss_pred ECCH-HHHHHHHHH--HCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE T ss_conf 0799-999999999--7699589997686888745999999999876985999688678979999999999998539988 Q ss_pred EEEEEEEEEC Q ss_conf 6431122205 Q gi|254780570|r 86 ICLAGYMRLL 95 (205) Q Consensus 86 iv~~g~~~il 95 (205) |+..|=+..+ T Consensus 102 IiaiGGGs~i 111 (188) T 1o2d_A 102 VVGLGGGSPX 111 (188) T ss_dssp EEEEESHHHH T ss_pred EEEECCCCCC T ss_conf 9992898612 No 153 >>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone, THDP, metal, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* (A:344-556) Probab=43.12 E-value=22 Score=15.94 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.3 Q ss_pred EEECCCCCCH Q ss_conf 9871899899 Q gi|254780570|r 156 AVPVSSQDTE 165 (205) Q Consensus 156 ~~~i~~~d~~ 165 (205) .+.+++.+.. T Consensus 191 ev~~~~~~~~ 200 (213) T 3hww_A 191 EMVVNDTDGA 200 (213) T ss_dssp EEECCSSHHH T ss_pred EEECCCHHHH T ss_conf 9984807779 No 154 >>2zhx_A UDG, uracil-DNA glycosylase; DNA repair, UNG-UGI complex, UNG-DNA interactions, cytoplasm, DNA damage; 3.10A {Mycobacterium tuberculosis} (A:) Probab=43.11 E-value=11 Score=17.95 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=32.1 Q ss_pred CCHHHHHHHHCCCCCCEEEEEEEEEEECC--CHHHHCCCCCEE-ECCCCCCCCCCCC Q ss_conf 10124321000123430364311222057--213210665423-1353223332444 Q gi|254780570|r 68 REHEKAILMQLSSIQPDLICLAGYMRLLS--RDFVESYKNKIL-NIHPSLLPLFPGL 121 (205) Q Consensus 68 ~~~~~~l~~~l~~~~~Dliv~~g~~~il~--~~~l~~~~~~~i-N~HpslLP~yrG~ 121 (205) +.|.+.+++.|.+.+.++|++. |+..-. ..+++.-+.-++ -.|||.|-.+||. T Consensus 157 e~ft~~ii~~l~~~~~~iVf~L-wG~~A~~~~~~i~~~~~~vl~s~HPSpls~~~~F 212 (238) T 2zhx_A 157 EAVTECAIRALAARAAPLVAIL-WGRDASTLKPMLAAGNCVAIESPHPSPLSASRGF 212 (238) T ss_dssp HHHHHHHHHHHHHSSSCEEEEE-ESHHHHTTTTTSCSSSEEEEEECCSSTTTGGGTT T ss_pred HHHHHHHHHHHHHCCCCCEEEE-EECHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC T ss_conf 9999999999982057828999-8343444330246778669974899950225799 No 155 >>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} (A:1-93,A:213-254) Probab=42.99 E-value=22 Score=15.92 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=36.3 Q ss_pred CEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 65999976985--0189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 4 KNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 4 ~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .+|++|=||=| |-++++.+.. .+.++.. +.|+..++ +|-+. ...-.++-.++.+.+.+. T Consensus 1 mpIgiFDSGiGGLTVlk~l~~~l----P~~~~iY-~aD~a~~P-------YG~Ks-------~eeI~~~~~~i~~~L~~~ 61 (135) T 1b73_A 1 MKIGIFDSGVGGLTVLKAIRNRY----RKVDIVY-LGDTARVP-------YGIRS-------KDTIIRYSLECAGFLKDK 61 (135) T ss_dssp CEEEEEESSSGGGTHHHHHHHHS----TTCEEEE-EECTTTCC-------CTTSC-------HHHHHHHHHHHHHHHHTT T ss_pred CEEEEEECCCCHHHHHHHHHHHC----CCCCEEE-EECCCCCC-------CCCCC-------HHHHHHHHHHHHHHHHHC T ss_conf 97999958976799999999978----9998899-93379999-------98899-------999999999999999865 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) +++++|.| T Consensus 62 ~vk~IVIA 69 (135) T 1b73_A 62 GVDIIVVA 69 (135) T ss_dssp TCSEEEEC T ss_pred CCCEEEEE T ss_conf 99899994 No 156 >>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} (A:123-258,A:339-364) Probab=42.95 E-value=22 Score=15.92 Aligned_cols=73 Identities=8% Similarity=-0.003 Sum_probs=41.1 Q ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCH-----HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 8999999973999847999997688887-----88899860895046301323322101243210001234303643112 Q gi|254780570|r 17 MLSLIQATKKNDYPAEIVGVFSDNSNAQ-----GLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGY 91 (205) Q Consensus 17 l~~Il~~~~~~~~~~eI~~Visn~~da~-----~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv~~g~ 91 (205) .+++.+..+....+ .|..+..|.+-.. ..+.+++.|+.......-. .+..++. .++..+++.+||.|+++++ T Consensus 7 ~~ala~~l~~~g~~-~Vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~-~~~~d~~-~~v~~i~~~~pdvIv~~~~ 83 (162) T 3lop_A 7 IDKXITALVTIGVT-RIGVLYQEDALGKEAITGVERTLKAHALAITAXASYP-RNTANVG-PAVDKLLAADVQAIFLGAT 83 (162) T ss_dssp HHHHHHHHHHTTCC-CEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEEC-TTSCCCH-HHHHHHHHSCCSEEEEESC T ss_pred HHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEEC-CCCCCHH-HHHHHHHHCCCCEEEEECC T ss_conf 99999999981998-8999983683269999999999997698899999837-9885368-9999998579899999687 Q ss_pred E Q ss_conf 2 Q gi|254780570|r 92 M 92 (205) Q Consensus 92 ~ 92 (205) . T Consensus 84 ~ 84 (162) T 3lop_A 84 A 84 (162) T ss_dssp H T ss_pred H T ss_conf 8 No 157 >>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305) Probab=42.61 E-value=23 Score=15.89 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=51.4 Q ss_pred CEEEEEECCCCH-HHH----HHHHHHHCCCCCCEEEEEEECCCCCHHH--------HHHHHCCC-----CE-EEEECCCC Q ss_conf 659999769850-189----9999997399984799999768888788--------89986089-----50-46301323 Q gi|254780570|r 4 KNIVIFISGEGT-NML----SLIQATKKNDYPAEIVGVFSDNSNAQGL--------VKARKEKV-----PT-FPIPYKDY 64 (205) Q Consensus 4 ~riavl~SG~Gs-nl~----~Il~~~~~~~~~~eI~~Visn~~da~~l--------~~a~~~~I-----p~-~~i~~~~~ 64 (205) |||+|+.||..+ .+. ++++..... ..+|.++. ..-.|| ....-.++ .. ..-..+.+ T Consensus 2 KrI~IltsGGdaPGlNa~Ir~vv~~a~~~--g~ev~G~~---~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LgtsR~~~~ 76 (186) T 3pfk_A 2 KRIGVLTSGGDSPGMNAAIRSVVRKAIYH--GVEVYGVY---HGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEF 76 (186) T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHHT--TCEEEEES---SHHHHHHTTCEEEECGGGGTTCTTCCSCTTCCCCCGGG T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEC---CCHHHHCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCCC T ss_conf 88999876887689999999999999977--99999984---15687567995159989998798648511045888865 Q ss_pred CCCCCHHHHHHHHCCCCCCEEEE-EEEEEEECCCHHHHCCCCCEEECCC Q ss_conf 32210124321000123430364-3112220572132106654231353 Q gi|254780570|r 65 ISRREHEKAILMQLSSIQPDLIC-LAGYMRLLSRDFVESYKNKILNIHP 112 (205) Q Consensus 65 ~~~~~~~~~l~~~l~~~~~Dliv-~~g~~~il~~~~l~~~~~~~iN~Hp 112 (205) .++ +.-+++.+.+++++.|.++ .-|-...-....+..+...++.+=- T Consensus 77 ~~~-~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~gi~vigiPk 124 (186) T 3pfk_A 77 KTE-EGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPCVGVPG 124 (186) T ss_dssp SSH-HHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCCEEEEEB T ss_pred CCC-HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 431-015579999998367659994584799999998733675553111 No 158 >>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} (A:) Probab=42.33 E-value=23 Score=15.86 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=24.1 Q ss_pred CEEEEEECCCCHHHH--HHHHHHHCCCCCCEEEEEEEC Q ss_conf 659999769850189--999999739998479999976 Q gi|254780570|r 4 KNIVIFISGEGTNML--SLIQATKKNDYPAEIVGVFSD 39 (205) Q Consensus 4 ~riavl~SG~Gsnl~--~Il~~~~~~~~~~eI~~Visn 39 (205) |||++.+||+....+ .+++..+.. ++++.+|+|. T Consensus 2 K~ili~vtGs~~~~~~~~li~~L~~~--g~~v~vv~s~ 37 (189) T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL--DFSVDLVISR 37 (189) T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT--TCEEEEEECH T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHC--CCEEEEEECC T ss_conf 88999973189999999999999977--9979999666 No 159 >>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303) Probab=42.16 E-value=23 Score=15.84 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=49.3 Q ss_pred CEEEEEECCCCH-H----HHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHH-------------HC-CCCEEEEECCCC Q ss_conf 659999769850-1----8999999973999847999997688887888998-------------60-895046301323 Q gi|254780570|r 4 KNIVIFISGEGT-N----MLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKAR-------------KE-KVPTFPIPYKDY 64 (205) Q Consensus 4 ~riavl~SG~Gs-n----l~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~-------------~~-~Ip~~~i~~~~~ 64 (205) |||+||.||..+ . +.++++..... ..+|.++. ..-.++-..+ .. |-....-....+ T Consensus 2 krI~IltsGGdaPGlNa~Ir~vv~~a~~~--g~~v~G~~---~G~~GL~~~~~~~l~~~~v~~i~~~GGtiLgtsR~~~~ 76 (182) T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIAN--GLEVFGIR---YGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEF 76 (182) T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHTT--TCEEEEEC---THHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGG T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEC---CCHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 88999885787377999999999999978--99899987---30687468991779999987677337740135777755 Q ss_pred CCCCCHHHHHHHHCCCCCCEEEEEE-EEEEECCCHHHHCCCCCEEEC Q ss_conf 3221012432100012343036431-122205721321066542313 Q gi|254780570|r 65 ISRREHEKAILMQLSSIQPDLICLA-GYMRLLSRDFVESYKNKILNI 110 (205) Q Consensus 65 ~~~~~~~~~l~~~l~~~~~Dliv~~-g~~~il~~~~l~~~~~~~iN~ 110 (205) .+++. -+++.+.+++++.|-+++. |-...=....+..+...+|.+ T Consensus 77 ~~~~~-~~~~~~~l~~~~Id~LivIGGdGS~~~a~~L~~~gi~vIgI 122 (182) T 1zxx_A 77 AEEEG-QLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIGL 122 (182) T ss_dssp TSHHH-HHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEE T ss_pred CCHHH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCE T ss_conf 55566-77788899870788899967972799999875424664430 No 160 >>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} (A:1-126) Probab=42.06 E-value=23 Score=15.83 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=32.0 Q ss_pred CCCCEEEEEECCC-CHH-HHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 9866599997698-501-89999999739998479999976888878889986089504630132332210124321000 Q gi|254780570|r 1 MIRKNIVIFISGE-GTN-MLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 1 M~k~riavl~SG~-Gsn-l~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) |.+.|+++.+.|+ |+. +..++. .. -+.+++.|++.+++ . ++...-..... .+ +-+.+ T Consensus 3 ~~~~rv~iiG~G~~g~~~~~~~~~---~~-~~~~iv~v~d~~~~-~----~~~~~~~~~~~-----~~-------~~~l~ 61 (126) T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFIS---TN-PHFELYKIVERSKE-L----SKERYPQASIV-----RS-------FKELT 61 (126) T ss_dssp CCCEEEEESCCSHHHHHTTHHHHH---HC-TTEEEEEEECSSCC-G----GGTTCTTSEEE-----SC-------SHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHH---HC-CCCEEEEEECCCHH-H----HHHHCCCCCCC-----CC-------HHHHH T ss_conf 667389999278999999999998---49-79389999829999-9----99867899842-----89-------99996 Q ss_pred CCCCCEEEEEE Q ss_conf 12343036431 Q gi|254780570|r 79 SSIQPDLICLA 89 (205) Q Consensus 79 ~~~~~Dliv~~ 89 (205) ...++|+++.+ T Consensus 62 ~~~~~d~v~i~ 72 (126) T 3fhl_A 62 EDPEIDLIVVN 72 (126) T ss_dssp TCTTCCEEEEC T ss_pred CCCCCCEEEEC T ss_conf 59999889991 No 161 >>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} (A:205-404) Probab=41.90 E-value=23 Score=15.81 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=32.4 Q ss_pred CCCEEEEEECCC-CHHHH-HHHHHHHCCCCCCEEEEEEEC---CCCCH----HHHHHHHCCCCEEEEECC Q ss_conf 866599997698-50189-999999739998479999976---88887----888998608950463013 Q gi|254780570|r 2 IRKNIVIFISGE-GTNML-SLIQATKKNDYPAEIVGVFSD---NSNAQ----GLVKARKEKVPTFPIPYK 62 (205) Q Consensus 2 ~k~riavl~SG~-Gsnl~-~Il~~~~~~~~~~eI~~Visn---~~da~----~l~~a~~~~Ip~~~i~~~ 62 (205) .++|+++.+||+ .|.+- .++... .+.++..+..+ .+... .-+.|++.+++.+.++.. T Consensus 22 ~~~kvvv~~SGG~DS~~~l~ll~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 87 (200) T 1gpm_A 22 GDDKVILGLSGGVDSSVTAMLLHRA----IGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAE 87 (200) T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHH----HGGGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHH----HCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECC T ss_conf 8844888405785249999999876----05417999935776447877999999976058845999452 No 162 >>1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (B:33-63,B:339-522) Probab=41.86 E-value=23 Score=15.81 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=46.1 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH----HHHH--CCCCEEEEECCCCCCCCCHHHHHHHH Q ss_conf 65999976985018999999973999847999997688887888----9986--08950463013233221012432100 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLV----KARK--EKVPTFPIPYKDYISRREHEKAILMQ 77 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~----~a~~--~~Ip~~~i~~~~~~~~~~~~~~l~~~ 77 (205) ||++|. |.++-+-.+.+... ++..+++++++...+...-+ ..++ .+....++...+ ..++.+. T Consensus 57 Krv~I~--gd~~~~~~la~fL~--ElGm~vv~~~~~~~~~~~~e~~~~~l~~~~~~~~~~v~~~~d-------~~e~~~~ 125 (215) T 1m1n_B 57 KRFALW--GDPDFVMGLVKFLL--ELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKD-------LWHLRSL 125 (215) T ss_dssp CEEEEE--CCHHHHHHHHHHHH--HTTCEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEEESCC-------HHHHHHH T ss_pred CEEEEE--CCCHHHHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCC-------HHHHHHH T ss_conf 879998--88289999999999--869973499945899789999999985255687877996899-------9999999 Q ss_pred CCCCCCEEEEEEEEEEEC Q ss_conf 012343036431122205 Q gi|254780570|r 78 LSSIQPDLICLAGYMRLL 95 (205) Q Consensus 78 l~~~~~Dliv~~g~~~il 95 (205) +++.+|||++...|.+.+ T Consensus 126 i~~~~pDLiig~s~ek~~ 143 (215) T 1m1n_B 126 VFTDKPDFMIGNSYGKFI 143 (215) T ss_dssp HHHSCCSEEEECTTHHHH T ss_pred HHHCCCCEEEECCCCHHH T ss_conf 862799999978853001 No 163 >>4ubp_C Protein (urease (chain C)); nickel, acetohydroxamic acid, metalloenzyme; HET: KCX; 1.55A {Bacillus pasteurii} (C:133-426,C:486-570) Probab=41.25 E-value=24 Score=15.75 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=56.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCC--------HHHHHHHHCCCCEEEEECCCCCCCCCHHHHH Q ss_conf 66599997698501899999997399984799999768888--------7888998608950463013233221012432 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNA--------QGLVKARKEKVPTFPIPYKDYISRREHEKAI 74 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da--------~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l 74 (205) ..++.+|+-|++|+..+|.+....+-...++ ++|- ..|.-|+++.+++-+. .|..+...|-+.. T Consensus 59 P~N~g~~gKGn~s~~~~l~eqi~AGA~GlKi------HEDwGaTpa~Id~~L~vad~~dvqvaiH--tDtLNE~GfvEdT 130 (379) T 4ubp_C 59 PINVGILGKGHGSSIAPIMEQIDAGAAGLXI------HEDWGATPASIDRSLTVADEADVQVAIH--SDTLNEAGFLEDT 130 (379) T ss_dssp SSEEEEEEECCCSSHHHHHHHHHHTCCEEEE------EGGGCCCHHHHHHHHHHHHHHTCEEEEE--CCTTCSSCCHHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCCCCCC------CCCCCCCHHHHHHHHHHHHHCCCCEEEE--HHHHHHHHHHHHH T ss_conf 5355431243567524556654303333211------2454332245544556665315300220--3356679998744 Q ss_pred HHHCC--------------CCCCEEEEEEEEEEECCCHH Q ss_conf 10001--------------23430364311222057213 Q gi|254780570|r 75 LMQLS--------------SIQPDLICLAGYMRLLSRDF 99 (205) Q Consensus 75 ~~~l~--------------~~~~Dliv~~g~~~il~~~~ 99 (205) +..+. .+.||++..+|+..+||.+- T Consensus 131 ~~a~~gRtiHt~HtEGAGGGHAPDii~v~g~~NVLPsST 169 (379) T 4ubp_C 131 LRAINGRVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSST 169 (379) T ss_dssp HHHHTTCCEEETTTTSTTSSSTTTGGGGGGSTTEEEBCC T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 444248754531002455555799999838761467886 No 164 >>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* (A:1-97,A:210-269) Probab=40.75 E-value=24 Score=15.70 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=36.4 Q ss_pred CCCEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 8665999976985--01899999997399984799999768888788899860895046301323322101243210001 Q gi|254780570|r 2 IRKNIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 2 ~k~riavl~SG~G--snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) .++.|+||=||-| |-++.|.+..- ..++ .-+-|+.. +|+=. +....-..+-.++.+.+. T Consensus 4 ~~~~IgifDSGvGGltv~~~i~~~lP----~~~~-iy~~D~~~-----------~PYG~---ks~~~i~~~~~~~~~~l~ 64 (157) T 3ist_A 4 XKQAIGFIDSGVGGLTVVREVLKQLP----HEQV-YYLGDTAR-----------CPYGP---RDKEEVAKFTWEXTNFLV 64 (157) T ss_dssp SCCCEEEEESSSTTHHHHHHHHHHCT----TCCE-EEEECGGG-----------CCCTT---SCHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC----CCCE-EEEECCCC-----------CCCCC---CCHHHHHHHHHHHHHHHH T ss_conf 77968999689657999999999789----9998-99953789-----------99899---999999999999999998 Q ss_pred CCCCEEEEEE Q ss_conf 2343036431 Q gi|254780570|r 80 SIQPDLICLA 89 (205) Q Consensus 80 ~~~~Dliv~~ 89 (205) +.+++++|.| T Consensus 65 ~~~~~~iviA 74 (157) T 3ist_A 65 DRGIKXLVIA 74 (157) T ss_dssp HTTCSEEEEC T ss_pred HCCCCEEEEE T ss_conf 6599879994 No 165 >>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase; HET: NAP; 2.10A {Methanothermus fervidus} (P:1-139,P:303-337) Probab=40.54 E-value=24 Score=15.67 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=31.6 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEE Q ss_conf 65999976985018999999973999847999997688887888998608950463 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPI 59 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i 59 (205) .|+++. |.|+--...+++..+.. +.+++.|..-+++ .....+...+.+.+.- T Consensus 2 IrVgIi--G~G~iGr~~~~al~~~p-d~eivaV~d~~~~-~~~~~~~~~~~~~~~~ 53 (174) T 1cf2_P 2 KAVAIN--GYGTVGKRVADAIAQQD-DMKVIGVSKTRPD-FEARMALKKGYDLYVA 53 (174) T ss_dssp EEEEEE--CCSTTHHHHHHHHHTSS-SEEEEEEEESSCS-HHHHHHHHTTCCEEES T ss_pred CEEEEE--CCCHHHHHHHHHHHCCC-CCEEEEEECCCCC-HHHHHHHHCCCCEEEE T ss_conf 699997--99689999999995098-9589999689976-9999996299967998 No 166 >>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3d7k_A* (A:368-563) Probab=39.95 E-value=16 Score=16.94 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=4.3 Q ss_pred HHHHCCCCEEE Q ss_conf 99860895046 Q gi|254780570|r 48 KARKEKVPTFP 58 (205) Q Consensus 48 ~a~~~~Ip~~~ 58 (205) .|+.+|++.+. T Consensus 140 ~A~a~G~~~~~ 150 (196) T 2uz1_A 140 VAAAFGADGYH 150 (196) T ss_dssp HHHHTTCEEEE T ss_pred HHHHCCCEEEE T ss_conf 99877997999 No 167 >>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} (A:134-293) Probab=39.95 E-value=25 Score=15.61 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=29.8 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEE Q ss_conf 866599997698501899999997399984799999768888788899860895046 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFP 58 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~ 58 (205) .|.|++++..|. --..++.+..+-. +.+++.|+ |+.....-+.+++++++... T Consensus 1 d~~rigiIG~G~--~g~~~~~~l~~~~-~~~~v~v~-dr~~~~~~~~~~~~~~~~~~ 53 (160) T 2i99_A 1 SSEVLCILGAGV--QAYSHYEIFTEQF-SFKEVRIW-NRTKENAEKFADTVQGEVRV 53 (160) T ss_dssp TCCEEEEECCSH--HHHHHHHHHHHHC-CCSEEEEE-CSSHHHHHHHHHHSSSCCEE T ss_pred CCCEEEEECCCC--CHHHHHHHHHHCC-CCCCEEEE-ECCCHHHHHHHHHHHCCCCC T ss_conf 763799975640--0788999998228-85541898-23721678999985156641 No 168 >>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} (A:) Probab=39.94 E-value=25 Score=15.61 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=38.9 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 98665999976985018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) |.+++++|. |.|.--..+.+...... ++++ |+..++ ...+.+...+.++...+.. +...++...- T Consensus 4 ~~~~~vlIi--G~G~iG~~ia~~L~~~g--~~vv-vvd~~~--~~~~~~~~~~~~~~~gd~~--------~~~~l~~~~~ 68 (144) T 2hmt_A 4 IKNKQFAVI--GLGRFGGSIVKELHRMG--HEVL-AVDINE--EKVNAYASYATHAVIANAT--------EENELLSLGI 68 (144) T ss_dssp --CCSEEEE--CCSHHHHHHHHHHHHTT--CCCE-EEESCH--HHHHTTTTTCSEEEECCTT--------CHHHHHTTTG T ss_pred CCCCEEEEE--CCCHHHHHHHHHHHHCC--CEEE-EEECCH--HHHHHHHHHCCCEEEECCC--------CHHHHHHCCC T ss_conf 558828998--87899999999999789--9089-983898--9999998606620351146--------7888863022 Q ss_pred CCCEEEEEE Q ss_conf 343036431 Q gi|254780570|r 81 IQPDLICLA 89 (205) Q Consensus 81 ~~~Dliv~~ 89 (205) .++|.++.. T Consensus 69 ~~ad~vi~~ 77 (144) T 2hmt_A 69 RNFEYVIVA 77 (144) T ss_dssp GGCSEEEEC T ss_pred CCCCEEEEE T ss_conf 128999999 No 169 >>2j8x_A Uracil-DNA glycosylase; hydrolase/inhibitor, hydrolase/inhibitor complex, EBV, DNA repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} (A:48-231) Probab=39.88 E-value=17 Score=16.70 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=45.0 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCE----EEEECCCCCCC-----CCHHHHHHHHCCCCCCEE Q ss_conf 018999999973999847999997688887888998608950----46301323322-----101243210001234303 Q gi|254780570|r 15 TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPT----FPIPYKDYISR-----REHEKAILMQLSSIQPDL 85 (205) Q Consensus 15 snl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~----~~i~~~~~~~~-----~~~~~~l~~~l~~~~~Dl 85 (205) ..|++|++.....--.. ..|..+.++.=.+.|+=. .++...+-.+. +.+.+.+++.|.+.+..+ T Consensus 42 ~SL~NI~kel~~d~~~~-------~~p~~g~L~~WakQGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~i 114 (184) T 2j8x_A 42 PSLRNIYAELHRSLPEF-------SPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLKAC 114 (184) T ss_dssp HHHHHHHHHHHHHCTTC-------CCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSC T ss_pred CHHHHHHHHHHHHCCCC-------CCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 22999999998634768-------76677985788649768886578873799998555581889999999998146885 Q ss_pred EEEEEEEEECC--CHHHHCCCCCE-EECCCCCCCC Q ss_conf 64311222057--21321066542-3135322333 Q gi|254780570|r 86 ICLAGYMRLLS--RDFVESYKNKI-LNIHPSLLPL 117 (205) Q Consensus 86 iv~~g~~~il~--~~~l~~~~~~~-iN~HpslLP~ 117 (205) |++. |+..-. ..+++.-+.-+ ---|||.|-. T Consensus 115 vf~L-wG~~A~~~~~~i~~~~h~il~~~HPSpls~ 148 (184) T 2j8x_A 115 VFML-WGAKAGDKASLINSKKHLVLTSQHPSPLAQ 148 (184) T ss_dssp EEEE-ESHHHHGGGGGSCTTTSEEEEECCSSGGGG T ss_pred EEEE-ECCHHHHHHHHCCCCCCEEEECCCCCCCCC T ss_conf 9998-103455666532578976997679995113 No 170 >>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} (A:1-171) Probab=39.82 E-value=25 Score=15.60 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=19.2 Q ss_pred CCCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 866599997698-5018999999973999847999997688 Q gi|254780570|r 2 IRKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 2 ~k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) |.+||+|+++|. |+.+-..+- ++ .++|.+ .|+. T Consensus 1 MsmkI~ViG~G~~G~~iA~~la---~~--G~~V~~--~d~~ 34 (171) T 3gg2_A 1 MSLDIAVVGIGYVGLVSATCFA---EL--GANVRC--IDTD 34 (171) T ss_dssp -CCEEEEECCSHHHHHHHHHHH---HT--TCEEEE--ECSC T ss_pred CCCEEEEECCCHHHHHHHHHHH---HC--CCCEEE--EECC T ss_conf 9976999898878999999999---67--991899--9899 No 171 >>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} (A:1-125,A:392-441) Probab=39.82 E-value=25 Score=15.60 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=17.7 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEE Q ss_conf 98665999976985018999999973999847999 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVG 35 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~ 35 (205) |.+|++.|+.+|+ --.++.++..+. +++|.. T Consensus 1 M~gK~VLVtGAGg--IG~~ia~~L~~~--G~~V~v 31 (175) T 1ff9_A 1 MATKSVLMLGSGF--VTRPTLDVLTDS--GIKVTV 31 (175) T ss_dssp -CCCEEEEECCST--THHHHHHHHHTT--TCEEEE T ss_pred CCCCEEEEECCCH--HHHHHHHHHHHC--CCEEEE T ss_conf 9987799988889--999999999829--497999 No 172 >>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} (A:456-647) Probab=39.70 E-value=25 Score=15.59 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=6.0 Q ss_pred CEEEEEECCCCH Q ss_conf 659999769850 Q gi|254780570|r 4 KNIVIFISGEGT 15 (205) Q Consensus 4 ~riavl~SG~Gs 15 (205) .|.++.+.|-|| T Consensus 76 ~~~vv~i~GDGs 87 (192) T 1t9b_A 76 ESLVIDIDGDAS 87 (192) T ss_dssp TSEEEEEEEHHH T ss_pred CCCEEEEECCHH T ss_conf 995699977557 No 173 >>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} (A:1-120) Probab=39.36 E-value=12 Score=17.86 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=33.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH-HHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 665999976985018999999973999847999997688887888-9986089504630132332210124321000123 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLV-KARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~-~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) ++|+.|. |+|.---+|..++.+.. .+.-|++ -|.-.|.. .++..+++ ++..+ -+++.++.++. T Consensus 24 ~mkVLVi--GsGgREHAia~aL~~S~---~v~~v~~-apGN~G~~~~~~~~~v~---i~~~d-------~~~i~~~a~~~ 87 (120) T 2qk4_A 24 AARVLII--GSGGREHTLAWKLAQSH---HVKQVLV-APGNAGTACSEKISNTA---ISISD-------HTALAQFCKEK 87 (120) T ss_dssp SEEEEEE--ECSHHHHHHHHHHTTCT---TEEEEEE-EECCGGGSBSSSEEECC---CCSSC-------HHHHHHHHHHH T ss_pred CCEEEEE--CCCHHHHHHHHHHHHCC---CCCEEEE-ECCCHHHHCCCCEECCC---CCCCC-------HHHHHHHHHHH T ss_conf 8769999--98889999999997499---9888999-77977884004313135---58579-------99999999985 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) ++||+|.. T Consensus 88 ~iDlvviG 95 (120) T 2qk4_A 88 KIEFVVVG 95 (120) T ss_dssp TCCEEEEC T ss_pred CCCEEEEC T ss_conf 99999989 No 174 >>4eug_A UDG, UNG, protein (glycosylase); 1.40A {Escherichia coli} (A:45-229) Probab=39.31 E-value=11 Score=18.10 Aligned_cols=98 Identities=11% Similarity=0.155 Sum_probs=48.0 Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCE----EEEECCCCCCC-----CCHHHHHHHHCCCCCCEEE Q ss_conf 18999999973999847999997688887888998608950----46301323322-----1012432100012343036 Q gi|254780570|r 16 NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPT----FPIPYKDYISR-----REHEKAILMQLSSIQPDLI 86 (205) Q Consensus 16 nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~----~~i~~~~~~~~-----~~~~~~l~~~l~~~~~Dli 86 (205) .|++|++..+..--... .|..+-++.-.+.|+=. ..+...+-.+. +.+.+.+++.|.+.+.++| T Consensus 44 SL~NI~kel~~~~~~~~-------~p~~g~L~~Wa~QGVLLLN~~LTv~~~~~~SH~~~gWe~ft~~ii~~i~~~~~~iv 116 (185) T 4eug_A 44 SLLNMYKELENTIPGFT-------RPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV 116 (185) T ss_dssp HHHHHHHHHHHHSTTCC-------CCSCCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCE T ss_pred CHHHHHHHHHHHCCCCC-------CCCCCCCHHHHHCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE T ss_conf 49999999998738997-------78998540454167267742589973666663101289999999999971788869 Q ss_pred EEEEEEEECC--CHHHHCCCCCEE-ECCCCCCCCCCCC Q ss_conf 4311222057--213210665423-1353223332444 Q gi|254780570|r 87 CLAGYMRLLS--RDFVESYKNKIL-NIHPSLLPLFPGL 121 (205) Q Consensus 87 v~~g~~~il~--~~~l~~~~~~~i-N~HpslLP~yrG~ 121 (205) ++. |+..-. ..+++..+.-+| --|||.|-.+||. T Consensus 117 f~L-wG~~A~~~~~~i~~~~~~vl~~~HPSPls~~~~F 153 (185) T 4eug_A 117 FLL-WGSHAQKKGAIIDKQRHHVLKAPQPSPLSAHRGF 153 (185) T ss_dssp EEE-ESHHHHHHTTTSCTTTSEEEEECCSSTTTGGGTT T ss_pred EEE-EEEHHHHHHHHHCCCCCEEEECCCCCCHHCCCCC T ss_conf 998-5111677876504678659983899802047898 No 175 >>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} (A:1-118,A:210-442) Probab=39.15 E-value=24 Score=15.66 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=14.3 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCC Q ss_conf 9866599997698501899999997399 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKND 28 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~ 28 (205) |+++|+.|..| |.=--+|..++.+.. T Consensus 19 ~~~~~vlvig~--g~reha~~~~~~~s~ 44 (351) T 3lp8_A 19 PGSMNVLVIGS--GGREHSMLHHIRKST 44 (351) T ss_dssp -CCEEEEEEEC--SHHHHHHHHHHTTCT T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHCC T ss_conf 99978999897--889999999997498 No 176 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1055-1291,A:1361-1404) Probab=38.70 E-value=26 Score=15.48 Aligned_cols=80 Identities=18% Similarity=0.102 Sum_probs=41.9 Q ss_pred CCCC-H--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEE Q ss_conf 6985-0--189999999739998479999976888878889986089504630132332210124321000123430364 Q gi|254780570|r 11 SGEG-T--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLIC 87 (205) Q Consensus 11 SG~G-s--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv 87 (205) +|.| | +|+.+..++..+. . +++-+.+.+....++++.+...--+-.....+.++..+.+...+....++++| T Consensus 36 pGsGKTtLaL~~~~~~~~~g~----~-vlyIDtE~~~~~~r~~~lg~d~d~l~i~~~~~~~~~~~~i~~l~~~~~~~liV 110 (281) T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGK----T-CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 110 (281) T ss_dssp TTSSHHHHHHHHHHHHHTTTC----C-EEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEE T ss_pred CCCCCEEEEEEECCHHHHCCC----C-HHHCCHHHHHCHHHHHHCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHEEEE T ss_conf 778847886410373332355----1-01000343346899987186433105037402789999998763111010220 Q ss_pred EEEEEEEC Q ss_conf 31122205 Q gi|254780570|r 88 LAGYMRLL 95 (205) Q Consensus 88 ~~g~~~il 95 (205) .=....+. T Consensus 111 IDSi~al~ 118 (281) T 3cmu_A 111 VDSVAALT 118 (281) T ss_dssp ESCGGGCC T ss_pred HHHHHHHC T ss_conf 20576517 No 177 >>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} (A:1-129) Probab=37.70 E-value=23 Score=15.82 Aligned_cols=72 Identities=8% Similarity=0.090 Sum_probs=35.7 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH--HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 6659999769850189999999739998479999976888878--88998608950463013233221012432100012 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQG--LVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~--l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) ..|+++. |.|.-....+.+..+. -+.+++.|+.-++.... .+.++.++.+... .+ .-+.+.. T Consensus 2 tirv~ii--G~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~------~~-------~~~~l~~ 65 (129) T 3ip3_A 2 SLKICVI--GSSGHFRYALEGLDEE-CSITGIAPGVPEEDLSKLEKAISEXNIKPKKY------NN-------WWEXLEK 65 (129) T ss_dssp CEEEEEE--CSSSCHHHHHTTCCTT-EEEEEEECSSTTCCCHHHHHHHHTTTCCCEEC------SS-------HHHHHHH T ss_pred CEEEEEE--CCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEE------CC-------HHHHHCC T ss_conf 3059999--5699999999987616-99899997368858999999999849997351------89-------9999648 Q ss_pred CCCEEEEEEE Q ss_conf 3430364311 Q gi|254780570|r 81 IQPDLICLAG 90 (205) Q Consensus 81 ~~~Dliv~~g 90 (205) .++|+++.+. T Consensus 66 ~~~D~V~i~t 75 (129) T 3ip3_A 66 EKPDILVINT 75 (129) T ss_dssp HCCSEEEECS T ss_pred CCCCEEEEEC T ss_conf 8988999813 No 178 >>1vi2_A Shikimate 5-dehydrogenase 2; structural genomics, oxidoreductase; HET: MSE NAD; 2.10A {Escherichia coli} (A:123-257) Probab=37.64 E-value=27 Score=15.37 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=16.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 665999976985018999999973999847999997 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Vis 38 (205) +-|.+ ++.|.|.--+++..++.+.. +.+..+.. T Consensus 3 ~~K~~-lVtGa~GiG~aia~~la~~G--~~vi~i~~ 35 (135) T 1vi2_A 3 KGKTX-VLLGAGGASTAIGAQGAIEG--LKEIKLFN 35 (135) T ss_dssp TTCEE-EEECCSHHHHHHHHHHHHTT--CSEEEEEE T ss_pred CCCEE-EEECCCCCHHHHHHHHHHCC--CCCCCCCC T ss_conf 78866-88535552047889987517--65331136 No 179 >>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} (A:100-248) Probab=37.62 E-value=27 Score=15.37 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=30.8 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCCCC Q ss_conf 665999976985-01899999997399984799999768888 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNSNA 43 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~da 43 (205) .++++.++.|.| +-+.+++++....+.+.++.++.+++... T Consensus 7 ~~~ii~iagG~GItP~~s~i~~~~~~~~~~~v~l~~~~r~~~ 48 (149) T 1fdr_A 7 CETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAA 48 (149) T ss_dssp CSEEEEEEEGGGGHHHHHHHHHCCSCTTCSEEEEEEEESSGG T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHH T ss_conf 777899992787562899999988638863799985068878 No 180 >>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} (A:1-127) Probab=37.58 E-value=27 Score=15.37 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=35.2 Q ss_pred CCEEEEEECCCCHHHHHH-HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 665999976985018999-9999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSL-IQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 3 k~riavl~SG~Gsnl~~I-l~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) +.|+++. |.|+-.... +.+.+. .-+++++.|+..++ ++++...-..... ..+-+.+.+. T Consensus 7 ~ikvgii--G~G~~~~~~~~~~l~~-~~~~~iv~v~d~~~-----~~~~~~~~~~~~~------------~~~~~~l~~~ 66 (127) T 3e82_A 7 TINIALI--GYGFVGKTFHAPLIRS-VPGLNLAFVASRDE-----EKVKRDLPDVTVI------------ASPEAAVQHP 66 (127) T ss_dssp CEEEEEE--CCSHHHHHTHHHHHHT-STTEEEEEEECSCH-----HHHHHHCTTSEEE------------SCHHHHHTCT T ss_pred CCEEEEE--CCCHHHHHHHHHHHHH-CCCCEEEEEECCCH-----HHHHHHCCCCCEE------------CCHHHHHCCC T ss_conf 8749999--7819999999999971-98968999987999-----9999647789647------------9999995599 Q ss_pred CCEEEEEEEE Q ss_conf 4303643112 Q gi|254780570|r 82 QPDLICLAGY 91 (205) Q Consensus 82 ~~Dliv~~g~ 91 (205) ++|+++.+.- T Consensus 67 ~vd~V~i~t~ 76 (127) T 3e82_A 67 DVDLVVIASP 76 (127) T ss_dssp TCSEEEECSC T ss_pred CCCEEEEECC T ss_conf 9988999331 No 181 >>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} (A:) Probab=37.37 E-value=27 Score=15.35 Aligned_cols=55 Identities=15% Similarity=-0.031 Sum_probs=32.7 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCCC--C----HHHHHHHHCCCCEEEEECC Q ss_conf 66599997698-50-189999999739998479999976888--8----7888998608950463013 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNSN--A----QGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~d--a----~~l~~a~~~~Ip~~~i~~~ 62 (205) ..|++|.+||+ .| .+..++... ..++..+..|... . ..-+.++++|||.++++.. T Consensus 45 ~~~v~v~~SGGkDSt~ll~l~~~~-----~~~~~~~~~d~g~~~~~~~~~~~~~~~~lgi~~~~~~~~ 107 (252) T 2o8v_A 45 PGEYVLSSSFGIQAAVSLHLVNQI-----RPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRAT 107 (252) T ss_dssp CSCEEEECCCSTTHHHHHHHHHHH-----STTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCS T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCC T ss_conf 998899933877899999999815-----899508999679987999999999998709834786375 No 182 >>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} (A:1-129) Probab=37.30 E-value=27 Score=15.34 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=30.7 Q ss_pred CCEEEEEECCCCH-HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 6659999769850-189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 3 RKNIVIFISGEGT-NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 3 k~riavl~SG~Gs-nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) +.|+++. |.|+ .-...+.+++.. ...+++.|.. +... ++..++|.+.- .....+... T Consensus 13 ~~rv~ii--G~g~~~~~~~~~~~~~~-~~~~i~~v~~-~~~~-----~~~~~~~~~~~-------------~~~~~~~~~ 70 (129) T 2yv2_A 13 ETRVLVQ--GITGREGSFHAKAMLEY-GTKVVAGVTP-GKGG-----SEVHGVPVYDS-------------VKEALAEHP 70 (129) T ss_dssp TCEEEEE--TTTSHHHHHHHHHHHHH-TCEEEEEECT-TCTT-----CEETTEEEESS-------------HHHHHHHCT T ss_pred CCEEEEE--CCCCCHHHHHHHHHHHH-CCCEEEEECC-CCCC-----CEEECEECCCC-------------HHHHHCCCC T ss_conf 9839998--89783767999999982-9937988679-9885-----17818722031-------------877641688 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) ++|+++.+ T Consensus 71 ~~D~v~i~ 78 (129) T 2yv2_A 71 EINTSIVF 78 (129) T ss_dssp TCCEEEEC T ss_pred CCCEEEEE T ss_conf 75389994 No 183 >>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} (A:153-276) Probab=36.70 E-value=28 Score=15.28 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=54.7 Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEE--CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 66599997698-5018999999973999847999997--68888788899860895046301323322101243210001 Q gi|254780570|r 3 RKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFS--DNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 3 k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Vis--n~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) .+|+++....+ |..+.+++.... .++.++..+-- -.++...++.+++.|..+.....- -+.++ T Consensus 3 glkia~vGd~~~~rv~~Sl~~~~~--~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~------------~ea~~ 68 (124) T 1ml4_A 3 GLKIGLLGDLKYGRTVHSLAEALT--FYDVELYLISPELLRMPRHIVEELREKGMKVVETTTL------------EDVIG 68 (124) T ss_dssp SEEEEEESCTTTCHHHHHHHHHGG--GSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCT------------HHHHT T ss_pred CCEEEECCCCCCCHHHHHHHHHHH--HCCCCEEEECCHHHCCCHHHHHHHHHCCCCEEECCCH------------HHHHC T ss_conf 676652068641233887999999--7899199979636538799999999719821212898------------99630 Q ss_pred CCCCEEEEEEEE--E--------------EECCCHHHHCCCCCEEECCCCCCCCC Q ss_conf 234303643112--2--------------20572132106654231353223332 Q gi|254780570|r 80 SIQPDLICLAGY--M--------------RLLSRDFVESYKNKILNIHPSLLPLF 118 (205) Q Consensus 80 ~~~~Dliv~~g~--~--------------~il~~~~l~~~~~~~iN~HpslLP~y 118 (205) +.|+|..-.| + ..+..++++..+.+++=+|| ||+. T Consensus 69 --~aDvvy~~~w~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~aivmH~--LPR~ 119 (124) T 1ml4_A 69 --KLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHP--LPRV 119 (124) T ss_dssp --TCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECC--SCCS T ss_pred --CCCEEECCEECCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCEEECC--CCCC T ss_conf --57512122002354525899998850765789999716999899699--9886 No 184 >>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} (A:) Probab=36.63 E-value=28 Score=15.27 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=22.6 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 665999976985018999999973999847999997 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Vis 38 (205) .+||++| |+||.+..++...+.- ..+++.|++ T Consensus 10 ~~riv~l--~GGtG~~~ll~glk~~--~~~lt~IV~ 41 (341) T 2p0y_A 10 RPKIVVI--GGGTGLPVVLNGLRKQ--AVDITAVVT 41 (341) T ss_dssp CCEEEEE--CCGGGHHHHHHHHHHS--SSEEEEECC T ss_pred CCEEEEE--CCCCCHHHHHHHHHHC--CCCEEEEEE T ss_conf 9749998--8962389999998647--998079998 No 185 >>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Bacillus stearothermophilus} (A:46-219) Probab=35.66 E-value=29 Score=15.17 Aligned_cols=48 Identities=10% Similarity=0.029 Sum_probs=22.4 Q ss_pred EEEECCCCHHH--HHHHHHHHCCC----CCCEEEEEEECCCCCHHHHHH-HHCCC Q ss_conf 99976985018--99999997399----984799999768888788899-86089 Q gi|254780570|r 7 VIFISGEGTNM--LSLIQATKKND----YPAEIVGVFSDNSNAQGLVKA-RKEKV 54 (205) Q Consensus 7 avl~SG~Gsnl--~~Il~~~~~~~----~~~eI~~Visn~~da~~l~~a-~~~~I 54 (205) +|++--+||.| +++.++..... ......+.+-++-|...+..+ ...+. T Consensus 30 vv~iGiGGS~LG~~~l~~al~~~~~~~~~~~~~~~~~~dn~Dp~~~~~~l~~l~~ 84 (174) T 1b0z_A 30 LVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEG 84 (174) T ss_dssp EEEECCGGGTHHHHHHHHHHSCTTGGGSTTSCEEEEESSSCCHHHHHHHHHHHTT T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCC T ss_conf 9998040676999999999876876422677637983189997999999832477 No 186 >>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661} (A:) Probab=34.91 E-value=29 Score=15.09 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=45.8 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH----HHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 65999976985018999999973999847999997688887888----99860895046301323322101243210001 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLV----KARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~----~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) .++.-+++|+|.....+.+.... ...+++| |. +...++ ++...+++-..+-..+..+ -.+. T Consensus 79 ~~vLDiGcG~G~~~~~la~~~~~---~~~v~gi--D~-s~~~i~~a~~~~~~~g~~~v~~~~~d~~~---------l~~~ 143 (215) T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGE---DGLVVSI--ER-IPELAEKAERTLRKLGYDNVIVIVGDGTL---------GYEP 143 (215) T ss_dssp CEEEEECCTTSHHHHHHHHHHCT---TSEEEEE--ES-CHHHHHHHHHHHHHHTCTTEEEEESCGGG---------CCGG T ss_pred CEEEEECCCCCHHHHHHHHHHCC---CCEEEEE--EC-CHHHHHHHHHHHHHHCCCCCEEEECCHHC---------CCCC T ss_conf 45899579887999999998564---7739999--42-78999888888987287640687456201---------7544 Q ss_pred CCCCEEEEEEEEEEECCCHHHHCCC Q ss_conf 2343036431122205721321066 Q gi|254780570|r 80 SIQPDLICLAGYMRLLSRDFVESYK 104 (205) Q Consensus 80 ~~~~Dliv~~g~~~il~~~~l~~~~ 104 (205) ...+|+|++.+-+.-++....+..+ T Consensus 144 ~~~fD~V~~~~~~~~~~~~~~~~l~ 168 (215) T 2yxe_A 144 LAPYDRIYTTAAGPKIPEPLIRQLK 168 (215) T ss_dssp GCCEEEEEESSBBSSCCHHHHHTEE T ss_pred CCCCCEEEEECCHHHHHHHHHHHCC T ss_conf 6775157983356777499998648 No 187 >>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} (A:) Probab=34.13 E-value=30 Score=15.00 Aligned_cols=57 Identities=11% Similarity=-0.072 Sum_probs=33.0 Q ss_pred CEEEEEECCC-CH-HHHHHHHHH-HCCCCCCEEEEEEECCCC--C----HHHHHHHHCCCCEEEEECC Q ss_conf 6599997698-50-189999999-739998479999976888--8----7888998608950463013 Q gi|254780570|r 4 KNIVIFISGE-GT-NMLSLIQAT-KKNDYPAEIVGVFSDNSN--A----QGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 4 ~riavl~SG~-Gs-nl~~Il~~~-~~~~~~~eI~~Visn~~d--a----~~l~~a~~~~Ip~~~i~~~ 62 (205) .+++|-+||+ .| .|..++... ... +.++..+..|..- . ..-+.|++.+||.+++... T Consensus 47 ~~v~va~SGGkDS~~lL~ll~~l~~~~--~~~i~~~~~d~g~~~~~~~~~~~~~~~~~~i~~~v~~~~ 112 (325) T 1zun_A 47 DNPVXLYSIGKDSAVXLHLARKAFFPG--KLPFPVXHVDTRWKFQEXYRFRDQXVEEXGLDLITHINP 112 (325) T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS--CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC- T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEECCH T ss_conf 987999667689999999999987640--898569996688850899999999999953565042170 No 188 >>2boo_A UDG, uracil-DNA glycosylase; UNG, base excision repair, radiation resistance, DNA damage, DNA repair, glycosidase, hydrolase; 1.8A {Deinococcus radiodurans} (A:) Probab=33.83 E-value=19 Score=16.44 Aligned_cols=57 Identities=12% Similarity=0.300 Sum_probs=33.7 Q ss_pred CCHHHHHHHHCCCCCCEEEEEEEEEEECC--CHHHHCCCCCEE-ECCCCCCC--CCCCCCCCC Q ss_conf 10124321000123430364311222057--213210665423-13532233--324442121 Q gi|254780570|r 68 REHEKAILMQLSSIQPDLICLAGYMRLLS--RDFVESYKNKIL-NIHPSLLP--LFPGLHTHR 125 (205) Q Consensus 68 ~~~~~~l~~~l~~~~~Dliv~~g~~~il~--~~~l~~~~~~~i-N~HpslLP--~yrG~~~~~ 125 (205) +.|.+.+++.|.+.+..+|++. |+..-. ..+++..+..+| --|||.|- .|.|.+++. T Consensus 161 e~ft~~ii~~l~~~~~~iVf~L-WG~~A~~~~~~i~~~~~~il~s~HPSpls~~~F~~~~~F~ 222 (247) T 2boo_A 161 EHFTDAVIKAVNAKEERVVFIL-WGSYARKKKKLITGKNHVVIESGHPSPLSEQYFFGTRPFS 222 (247) T ss_dssp HHHHHHHHHHHHTCSSCCEEEE-ESHHHHGGGGGCCCTTCEEEEECCSSTTTGGGTTTCCHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEE-EHHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCHHH T ss_conf 9999999999982568859997-1578998874046778659970898811138998998489 No 189 >>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} (A:146-268) Probab=33.72 E-value=31 Score=14.96 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=53.8 Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 66599997698-50189999999739998479999976--8888788899860895046301323322101243210001 Q gi|254780570|r 3 RKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSD--NSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 3 k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn--~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) .+|+++..-.+ |..+.+++.... .++.++..+..- .++.. ..++..+..+..... +.+.+. T Consensus 4 g~kia~vGD~~~~rv~~Sl~~~l~--~~g~~v~~~~p~~~~~~~~--~~~~~~~~~~~~~~d------------~~ea~~ 67 (123) T 1pg5_A 4 GLVFALLGDLKYARTVNSLLRILT--RFRPKLVYLISPQLLRARK--EILDELNYPVKEVEN------------PFEVIN 67 (123) T ss_dssp TCEEEEEECCSSCHHHHHHHHHGG--GSCCSEEEEECCGGGCCCH--HHHTTCCSCEEEESC------------GGGTGG T ss_pred CCEEEEEECCCCCHHHHHHHHHHH--HCCCCEEECCCHHHCCCHH--HHHHHHCCCCCCCCC------------HHHHHC T ss_conf 665899726872046756999998--7399646426736406517--777652564222468------------888724 Q ss_pred CCCCEEEEEEEEE----------------EECCCHHHHCCCCCEEECCCCCCCCCC Q ss_conf 2343036431122----------------205721321066542313532233324 Q gi|254780570|r 80 SIQPDLICLAGYM----------------RLLSRDFVESYKNKILNIHPSLLPLFP 119 (205) Q Consensus 80 ~~~~Dliv~~g~~----------------~il~~~~l~~~~~~~iN~HpslLP~yr 119 (205) +.|+|..-.|- ..+.+++++..+..++=+|| ||+.. T Consensus 68 --~aDvvy~~~~~~~~~~~~~~~~~~~~~~~vt~~~l~~~k~~ai~mH~--LPR~~ 119 (123) T 1pg5_A 68 --EVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHP--LPRVN 119 (123) T ss_dssp --GCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECC--SCCSS T ss_pred --CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEECC--CCCCC T ss_conf --55357640344344204788888887740369999726989799799--99988 No 190 >>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393, structural genomics, JCSG, joint center for structural genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima} (A:) Probab=33.67 E-value=31 Score=14.95 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=22.9 Q ss_pred CCCCEEEEEECCCCHH-----------------HHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 9866599997698501-----------------899999997399984799999768 Q gi|254780570|r 1 MIRKNIVIFISGEGTN-----------------MLSLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 1 M~k~riavl~SG~Gsn-----------------l~~Il~~~~~~~~~~eI~~Visn~ 40 (205) |.+.+.+||+.|.||= ++..+++...... .++..|.++. T Consensus 11 ~~~~~aiIlAaG~gsRl~~~~pK~Ll~i~gkpli~~~i~~l~~~~~-~~~iiv~~~~ 66 (234) T 1vpa_A 11 HHMNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEA-IDGVVIVTRR 66 (234) T ss_dssp CCCEEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTT-CSEEEEEECG T ss_pred CCCCEEEECCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCC-CCCCCCCCCC T ss_conf 8770899946877623897998437078999989999999996878-4522322351 No 191 >>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} (A:1-185,A:357-384) Probab=33.27 E-value=31 Score=14.91 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=81.7 Q ss_pred CEEEEEECCCCH---HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCC-CEEEEECCC-CCCCCC----HHHHH Q ss_conf 659999769850---189999999739998479999976888878889986089-504630132-332210----12432 Q gi|254780570|r 4 KNIVIFISGEGT---NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKV-PTFPIPYKD-YISRRE----HEKAI 74 (205) Q Consensus 4 ~riavl~SG~Gs---nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~I-p~~~i~~~~-~~~~~~----~~~~l 74 (205) .||++++ |+=+ -+..++++.++.. ..++..+.|..-+......-++.++ +...+.... ..+... .=..+ T Consensus 1 ~KIl~v~-GtR~e~iklaPv~~al~~~~-~~~~~v~~tg~h~~~~~~~i~~dg~~~~~~~~l~~~~~~~~~~~~~~i~~l 78 (213) T 1vgv_A 1 XKVLTVF-GTRPEAIKXAPLVHALAKDP-FFEAKVCVTAQHREXLDQVLKLFSIVPDYDLNIXQPGQGLTEITCRILEGL 78 (213) T ss_dssp CEEEEEE-CSHHHHHHHHHHHHHHHHST-TCEEEEEECCSSGGGGHHHHHHHTCCCSEECCCCSTTSCHHHHHHHHHHHH T ss_pred CEEEEEE-EHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9599999-73572999999999997389-987799991889899999998618787745235899999999999999864 Q ss_pred HHHCCCCCCEEEEEEEEEEECCCHHHHC--CCCCEEECCCCCCCCCC--CC-CCCCCHHCCCCCCCCCCEEEECCCCCCC Q ss_conf 1000123430364311222057213210--66542313532233324--44-2121000024653445303312321866 Q gi|254780570|r 75 LMQLSSIQPDLICLAGYMRLLSRDFVES--YKNKILNIHPSLLPLFP--GL-HTHRRVLQSGIKITGCTVHMVTANMDEG 149 (205) Q Consensus 75 ~~~l~~~~~Dliv~~g~~~il~~~~l~~--~~~~~iN~HpslLP~yr--G~-~~~~~ai~~g~~~~G~TiH~v~~~~D~G 149 (205) .+.+...+||+|++.|...--..--+.. .+..++-++.|+--.-+ |+ ....+-... + =+++|+...+.-.- T Consensus 79 ~~vl~~~kPDlVlV~GD~~~~la~AlaA~~~~IPVaHieaGlrs~d~~~g~~ee~~R~~id--~--la~lhF~~t~~~r~ 154 (213) T 1vgv_A 79 KPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTG--H--LAXYHFSPTETSRQ 154 (213) T ss_dssp HHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHH--T--TCSEEEESSHHHHH T ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHCC--C--CCEEEEECCHHHHH T ss_conf 8889744665403203653113489998741643898622446677321463666665314--3--24088742588998 Q ss_pred CEE----EEEEEECCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHCCCEEEECC Q ss_conf 267----7899871899899999999999999--99999999998695699898 Q gi|254780570|r 150 PII----AQAAVPVSSQDTESSLSQKVLSAEH--LLYPLALKYTILGKTSNSND 197 (205) Q Consensus 150 ~Ii----~q~~~~i~~~d~~~~l~~rv~~~E~--~l~~~~i~~~~~g~i~~~~~ 197 (205) ..+ ..+++.+..+-..+.+......++. +.-.+.++.+-.+|+.+-.. T Consensus 155 ~L~~eG~~~~rI~vvGnp~iDal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (213) T 1vgv_A 155 NLLRENVADSRIFITGNTVIDALLWVRDQVXGDGQACSRILEALKNNRISLGSH 208 (213) T ss_dssp HHHHTTCCGGGEEECCCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHTCCCC--- T ss_pred HHHHCCCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 888607885423021571376787766543189859999999998379887865 No 192 >>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387) Probab=33.27 E-value=31 Score=14.91 Aligned_cols=35 Identities=6% Similarity=-0.070 Sum_probs=12.9 Q ss_pred CEEEEEECCC--CH-HHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 6599997698--50-18999999973999847999997 Q gi|254780570|r 4 KNIVIFISGE--GT-NMLSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 4 ~riavl~SG~--Gs-nl~~Il~~~~~~~~~~eI~~Vis 38 (205) +|++++.+.. |. .++.+.+.......++.+...++ T Consensus 19 kkVaII~~d~~yG~~~~~~f~~~l~~~G~~V~~~~~i~ 56 (200) T 3i45_A 19 TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQW 56 (200) T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEEC T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 17854478967889999988877752366136887664 No 193 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:357-593,A:665-705) Probab=32.99 E-value=32 Score=14.88 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=39.2 Q ss_pred CCCC-H--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEE Q ss_conf 6985-0--189999999739998479999976888878889986089504630132332210124321000123430364 Q gi|254780570|r 11 SGEG-T--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLIC 87 (205) Q Consensus 11 SG~G-s--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv 87 (205) +|.| | ||+.+..++..+. .+ ++-+-+.+..-.+++..++..--+-.....+.+.....+...+....++++| T Consensus 36 pGsGKTtl~l~~~~~~~~~g~----~v-lyIdtE~~~~~~r~~~lg~d~d~l~~~~~~~~~~~~~~~~~l~~~~~~~liV 110 (278) T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGK----TC-AFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 110 (278) T ss_dssp TTSSHHHHHHHHHHHHHTTTC----CE-EEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEE T ss_pred CCCCCEEEEHHHHHHHHHCCC----EE-EEEEHHHCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 778842420578887874487----46-8973221468155666177641103426880478999999997568966799 Q ss_pred EEE Q ss_conf 311 Q gi|254780570|r 88 LAG 90 (205) Q Consensus 88 ~~g 90 (205) .-. T Consensus 111 IDS 113 (278) T 3cmu_A 111 VDS 113 (278) T ss_dssp ESC T ss_pred ECC T ss_conf 721 No 194 >>2o2z_A Hypothetical protein; NP_244435.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A (A:) Probab=32.91 E-value=32 Score=14.87 Aligned_cols=32 Identities=31% Similarity=0.771 Sum_probs=24.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 665999976985018999999973999847999997 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Vis 38 (205) ++||++| |+||.+..++...+. ...+++.|++ T Consensus 4 ~~~iv~~--gGGtG~~~ll~gl~~--~~~~it~IV~ 35 (323) T 2o2z_A 4 KKNVIVF--GGGTGLSVLLRGLKT--FPVSITAIVT 35 (323) T ss_dssp CEEEEEE--ECSHHHHHHHHHHTT--SSEEEEEEEC T ss_pred CCCEEEE--CCCCCHHHHHHHHHH--CCCCEEEEEE T ss_conf 6878998--784018999999974--8998499998 No 195 >>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} (A:180-307) Probab=32.84 E-value=32 Score=14.86 Aligned_cols=74 Identities=8% Similarity=-0.109 Sum_probs=36.2 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHCC--CCC--EEECCCCCCCCCC Q ss_conf 788899860895046301323322101243210001234303643112220572132106--654--2313532233324 Q gi|254780570|r 44 QGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESY--KNK--ILNIHPSLLPLFP 119 (205) Q Consensus 44 ~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv~~g~~~il~~~~l~~~--~~~--~iN~HpslLP~yr 119 (205) ...+.|++.|+|+..-......-.+.....+-..=.--++|++++.|... +......+ ..+ .||..|.-+..|+ T Consensus 31 ~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~g~~g~~~~aDlil~iG~~~--~~~~~~~~~~~~~ii~Id~d~~~~~~~~ 108 (128) T 1efp_A 31 IIEELADKLGAAVGASRAAVDSGYAPNDWQVGQTGKVVAPELYVAVGISG--AIQHLAGMKDSKVIVAINKDEEAPIFQI 108 (128) T ss_dssp HHHHHHHHHTCEEEECHHHHHTTSSCGGGBBSSSSBCCCCSEEEEESCCC--CHHHHTTTTTCSEEEEEESCTTCGGGGT T ss_pred HHHHHHHHHCCEEEECHHHCCCCCCCHHHHCCCCCCCCCCCEEEEEEEEC--CHHHHCCCCCCCEEEEEECCCCCCCCCC T ss_conf 99999998699478607650689999688647778502788999982322--6677547898987999768899986434 No 196 >>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} (A:199-372) Probab=32.54 E-value=24 Score=15.73 Aligned_cols=70 Identities=10% Similarity=-0.039 Sum_probs=35.1 Q ss_pred HHHHHHHHHCCCCCCEEEEEE---ECCCCCHHHHHHHHCCCCEEEEECCCCCCCCC---H--------HHHHHHHCCCCC Q ss_conf 899999997399984799999---76888878889986089504630132332210---1--------243210001234 Q gi|254780570|r 17 MLSLIQATKKNDYPAEIVGVF---SDNSNAQGLVKARKEKVPTFPIPYKDYISRRE---H--------EKAILMQLSSIQ 82 (205) Q Consensus 17 l~~Il~~~~~~~~~~eI~~Vi---sn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~---~--------~~~l~~~l~~~~ 82 (205) ++.+++...+.+- .+.++ +.+..+...+.|++.|+|+..-...+-.-.+. | .....+.++ + T Consensus 6 i~~a~~~L~~Akr---Pvii~G~g~~~a~~~l~~lae~~~~pv~~t~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~--~ 80 (174) T 1ybh_A 6 LEQIVRLISESKK---PVLYVGGGCLNSSDELGRFVELTGIPVASTLMGLGSYPXDDELSLHMLGMHGTVYANYAVE--H 80 (174) T ss_dssp HHHHHHHHHHCSS---EEEEECGGGTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHH--H T ss_pred HHHHHHHHHCCCC---CEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--C T ss_conf 9999999970799---1999898624519999999998698999874247666840013200257768799986521--2 Q ss_pred CEEEEEEEE Q ss_conf 303643112 Q gi|254780570|r 83 PDLICLAGY 91 (205) Q Consensus 83 ~Dliv~~g~ 91 (205) .|+|++.|. T Consensus 81 aDlil~iG~ 89 (174) T 1ybh_A 81 SDLLLAFGV 89 (174) T ss_dssp CSEEEEESC T ss_pred CCEEEEECC T ss_conf 899999698 No 197 >>2rgw_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, pyrimidine biosynthesis, thermostability; 2.80A {Methanococcus jannaschii} PDB: 3e2p_A (A:148-281) Probab=32.35 E-value=32 Score=14.81 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=53.8 Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHCCCC-CCEEEEEEE--CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 66599997698-5018999999973999-847999997--6888878889986089504630132332210124321000 Q gi|254780570|r 3 RKNIVIFISGE-GTNMLSLIQATKKNDY-PAEIVGVFS--DNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 3 k~riavl~SG~-Gsnl~~Il~~~~~~~~-~~eI~~Vis--n~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) .+||++.+-++ +.-+.+++.... .+ ++++.++.- -.++...++.|++.|..+..... +-+.+ T Consensus 4 glkia~iGd~~~~rv~~S~~~~~~--~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~i~~~~d------------~~ea~ 69 (134) T 2rgw_A 4 GIKIAFVGDLKYGRTVHSLVYALS--LFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKES------------LDDLD 69 (134) T ss_dssp SCEEEEESCTTTCHHHHHHHHHHT--TSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESS------------GGGCC T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCHH------------HHHHC T ss_conf 776999705543325688899865--0574379996575457852321010012222111200------------12202 Q ss_pred CCCCCEEEEEEEEE----------------EECCCHHHHCCCCCEEECCCCCCCCC Q ss_conf 12343036431122----------------20572132106654231353223332 Q gi|254780570|r 79 SSIQPDLICLAGYM----------------RLLSRDFVESYKNKILNIHPSLLPLF 118 (205) Q Consensus 79 ~~~~~Dliv~~g~~----------------~il~~~~l~~~~~~~iN~HpslLP~y 118 (205) + +.|+|..-.|- ..+..+++++.. ++=+|| ||+. T Consensus 70 ~--~aDviy~~~w~~~~~~~~~~~~~~~~~~~v~~~~l~k~~--~ivmH~--LPR~ 119 (134) T 2rgw_A 70 D--DIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKK--FIIMHP--LPRV 119 (134) T ss_dssp T--TCSEEEECCCCGGGCSSHHHHHHHHHHHCBCHHHHTTCS--CEEECC--SCCS T ss_pred C--CCEEEEECCEECCCCCCHHHHHHHHCHHHHHHHHHCCCC--CEEECC--CCCC T ss_conf 1--316995013533778999999987320589999706999--899499--9998 No 198 >>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. oryzae KACC10331; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A (A:1-129,A:203-314) Probab=32.14 E-value=21 Score=16.05 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=14.0 Q ss_pred CCCCEEEEEECCCCHH Q ss_conf 9866599997698501 Q gi|254780570|r 1 MIRKNIVIFISGEGTN 16 (205) Q Consensus 1 M~k~riavl~SG~Gsn 16 (205) |.++|+|++++|.|+- T Consensus 1 ~~~~~va~vFpGqG~q 16 (241) T 3k89_A 1 MTESTLAFVFPGQGSQ 16 (241) T ss_dssp CEEEEEEEEECCTTCC T ss_pred CCCCCEEEEECCCHHH T ss_conf 9989889993882562 No 199 >>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal- binding, pyrimidine biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus} (B:125-271) Probab=31.93 E-value=28 Score=15.24 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=14.6 Q ss_pred HCCCCCEEECCCCCCCCCCCCCC Q ss_conf 10665423135322333244421 Q gi|254780570|r 101 ESYKNKILNIHPSLLPLFPGLHT 123 (205) Q Consensus 101 ~~~~~~~iN~HpslLP~yrG~~~ 123 (205) +..+..++=+|| ||.+||.-. T Consensus 115 ~~~~~~ai~mH~--LP~~rg~Ei 135 (147) T 3d6n_B 115 ERFEKVKLYMHP--GPVNRNVDI 135 (147) T ss_dssp HHHTTCCCEECS--SCCCBTTTB T ss_pred HHCCCCCEEECC--CCCCCCCCC T ss_conf 874889998279--999998866 No 200 >>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* (A:1-363) Probab=31.79 E-value=33 Score=14.75 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=15.8 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 9866599997698501899999997399984799999 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVF 37 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Vi 37 (205) |.++||.|.+ |+|.-=..|++...+.. .++..+. T Consensus 30 ~~~~~IlVTG-atGfiG~~lv~~Ll~~~--~~v~~~~ 63 (363) T 2q1s_A 30 LANTNVMVVG-GAGFVGSNLVKRLLELG--VNQVHVV 63 (363) T ss_dssp GTTCEEEEET-TTSHHHHHHHHHHHHTT--CSEEEEE T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHCC--CCEEEEE T ss_conf 3899899956-88889999999999779--9789999 No 201 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:706-942,A:1014-1055) Probab=31.60 E-value=33 Score=14.73 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=42.9 Q ss_pred CCCC-H--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEE Q ss_conf 6985-0--189999999739998479999976888878889986089504630132332210124321000123430364 Q gi|254780570|r 11 SGEG-T--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLIC 87 (205) Q Consensus 11 SG~G-s--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv 87 (205) +|.| | |++....++..+.. +++-+-+.+....++++.+...--+-.....+.+.....+...+....++++| T Consensus 36 pGsGKT~lal~~~~~~~~~g~~-----viyIDtE~~~~~~r~~~lg~~~d~l~~~~~~~~~~~~~~~~~l~~~~~~~liV 110 (279) T 3cmw_A 36 ESSGKTTLTLQVIAAAQREGKT-----CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 110 (279) T ss_dssp TTSSHHHHHHHHHHHHHHTTCC-----EEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEE T ss_pred CCCCCEEEEHHHHHHHHHCCCE-----EEEECCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 8777267758876877731663-----45540333428778865277630204326437778999889873158603288 Q ss_pred EEEEEEEC Q ss_conf 31122205 Q gi|254780570|r 88 LAGYMRLL 95 (205) Q Consensus 88 ~~g~~~il 95 (205) .-...... T Consensus 111 IDSi~al~ 118 (279) T 3cmw_A 111 VDSVAALT 118 (279) T ss_dssp ESCSTTCC T ss_pred ECCHHHCC T ss_conf 55444324 No 202 >>2ppv_A Uncharacterized protein; NP_764104.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228} (A:) Probab=31.51 E-value=33 Score=14.72 Aligned_cols=32 Identities=25% Similarity=0.664 Sum_probs=24.0 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 665999976985018999999973999847999997 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Vis 38 (205) ++||++| |+||.+..++...+ .++.+++.|++ T Consensus 4 ~~~iv~l--~GGtG~~~ll~gl~--~~~~~lt~IV~ 35 (332) T 2ppv_A 4 QXNVVLI--GGGTGLSVLARGLR--EFPIDITAIVT 35 (332) T ss_dssp CEEEEEE--ECHHHHHHHHHHHT--TSSEEEEEEEC T ss_pred CCCEEEE--CCCHHHHHHHHHHH--HCCCCEEEEEE T ss_conf 5748998--68020899999997--48998499998 No 203 >>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} (A:) Probab=31.46 E-value=33 Score=14.71 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=39.0 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHH----HHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 659999769850189999999739998479999976888878889----9860895046301323322101243210001 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVK----ARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~----a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) +++.-+++|.|+.+..+.+. ..++.+| + .+...++. ++.+|++....-.. ... ........ T Consensus 43 ~~vLD~GcG~G~~~~~~a~~------~~~v~~v--D-~s~~~l~~a~~~~~~~g~~~~~~~~~----~~~--~~~~~~~~ 107 (171) T 1ws6_A 43 GRFLDPFAGSGAVGLEAASE------GWEAVLV--E-KDPEAVRLLKENVRRTGLGARVVALP----VEV--FLPEAKAQ 107 (171) T ss_dssp CEEEEETCSSCHHHHHHHHT------TCEEEEE--C-CCHHHHHHHHHHHHHHTCCCEEECSC----HHH--HHHHHHHT T ss_pred CEEEEECCCHHHHHHHHHCC------CEEEEEE--E-CCHHHHHHHHHHHHHHCCCCCCHHHH----HHH--HCHHCCCC T ss_conf 88998125211567754134------3024676--1-47678654556777522222100001----221--00000256 Q ss_pred CCCCEEEEEEE-EEEECCCHH Q ss_conf 23430364311-222057213 Q gi|254780570|r 80 SIQPDLICLAG-YMRLLSRDF 99 (205) Q Consensus 80 ~~~~Dliv~~g-~~~il~~~~ 99 (205) ....|+|++.. |...-++.. T Consensus 108 ~~~fD~v~~~~~~~~~~~~~~ 128 (171) T 1ws6_A 108 GERFTVAFXAPPYAXDLAALF 128 (171) T ss_dssp TCCEEEEEECCCTTSCTTHHH T ss_pred CCCCCEEEECCCCCCCHHHHH T ss_conf 776420577576445879999 No 204 >>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} (A:1-111,A:215-236) Probab=31.22 E-value=34 Score=14.69 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=20.9 Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 65999976985018999999973999847999997688 Q gi|254780570|r 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 4 ~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) .|+++. |.|.-...+.....+. +.+++.|+..++ T Consensus 1 lkVgiI--G~G~~g~~~~~~l~~~--~~eivav~d~~~ 34 (133) T 2dc1_A 1 MLVGLI--GYGAIGKFLAEWLERN--GFEIAAILDVRG 34 (133) T ss_dssp CEEEEE--CCSHHHHHHHHHHHHT--TCEEEEEECSSC T ss_pred CEEEEE--CCCHHHHHHHHHHHHC--CCEEEEEEECCC T ss_conf 989999--7888999999999719--988999997896 No 205 >>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} (A:1-204) Probab=30.79 E-value=34 Score=14.64 Aligned_cols=30 Identities=3% Similarity=-0.052 Sum_probs=17.4 Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHH Q ss_conf 186626778998718998999999999999 Q gi|254780570|r 146 MDEGPIIAQAAVPVSSQDTESSLSQKVLSA 175 (205) Q Consensus 146 ~D~G~Ii~q~~~~i~~~d~~~~l~~rv~~~ 175 (205) ....+-...+.+-|..++++.+..++.... T Consensus 159 ~~~~~~~~~~v~vigg~~ta~e~~~~~~~~ 188 (204) T 1f0y_A 159 FFNPVPVMKLVEVIKTPMTSQKTFESLVDF 188 (204) T ss_dssp ECSSTTTCCEEEEECCTTCCHHHHHHHHHH T ss_pred CCCHHHHCCCEEECCCCCCCHHHHHHHHHH T ss_conf 443243234202137866548899999999 No 206 >>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} (A:1-116) Probab=30.77 E-value=34 Score=14.64 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=29.8 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEE Q ss_conf 66599997698501899999997399984799999768888788899860895046 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFP 58 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~ 58 (205) .+|++|+.-| +|.+-++-+...+. +++|. ++|.....-.+...+.+++++. T Consensus 18 ~~~v~viGlG-~sG~salA~~L~~~--G~~V~--~~D~~~~~~~~~~~~~g~~~~~ 68 (116) T 1p3d_A 18 VQQIHFIGIG-GAGXSGIAEILLNE--GYQIS--GSDIADGVVTQRLAQAGAKIYI 68 (116) T ss_dssp CCEEEEETTT-STTHHHHHHHHHHH--TCEEE--EEESCCSHHHHHHHHTTCEEEE T ss_pred CCEEEEEEEC-HHHHHHHHHHHHHC--CCEEE--EEECCCCHHHHHHHHCCCEEEC T ss_conf 7789999966-99999999999978--89399--9928999799999978799987 No 207 >>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} (A:214-513) Probab=30.70 E-value=34 Score=14.63 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=31.9 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEEC---CCCC-HHHHHHHHCCCCEEEEECC Q ss_conf 66599997698-50-189999999739998479999976---8888-7888998608950463013 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSD---NSNA-QGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn---~~da-~~l~~a~~~~Ip~~~i~~~ 62 (205) ..+++++.||+ .| .+.+++.... + ++.++..+ ..+. ..-+.|+..|++...+... T Consensus 28 ~~~v~v~lSGGlDSs~ia~ll~~~~-~----~~~~~t~~~~~~~e~~~a~~va~~lg~~~~~~~~~ 88 (300) T 1jgt_A 28 GDTPLVVLSGGIDSSGVAACAHRAA-G----ELDTVSMGTDTSNEFREARAVVDHLRTRHREITIP 88 (300) T ss_dssp TCCCEEECCSSHHHHHHHHHHHHHH-S----SCEEEEEECSSCCCHHHHHHHHHHHTCEEEEEECC T ss_pred CCCCEEECCCCCCHHHHHHHHHHCC-C----CCCEEECCCCCCCHHHHHHHHHHHHHCCEEEEECC T ss_conf 8886697479853399999876303-4----43235224445764778999987741250799739 No 208 >>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiamine diphosphate; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* (A:192-368) Probab=30.67 E-value=28 Score=15.26 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=38.2 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEE---CCCCC--HHHHHHHHCCCCEEEEECCCCCCCCC---HHHHHHHHCCCCCCEEE Q ss_conf 018999999973999847999997---68888--78889986089504630132332210---12432100012343036 Q gi|254780570|r 15 TNMLSLIQATKKNDYPAEIVGVFS---DNSNA--QGLVKARKEKVPTFPIPYKDYISRRE---HEKAILMQLSSIQPDLI 86 (205) Q Consensus 15 snl~~Il~~~~~~~~~~eI~~Vis---n~~da--~~l~~a~~~~Ip~~~i~~~~~~~~~~---~~~~l~~~l~~~~~Dli 86 (205) ..++.+.+..++-+- .+.++- .+.++ ...+.+++.|+|++.-......-.+. |-......+ -.++|+| T Consensus 8 ~~i~~~~~~L~~A~r---Pvii~G~~~~~~~a~~~l~~lae~~g~Pv~~~~~~k~~~~~~~p~~~g~~~~~~-l~~aDli 83 (177) T 2q28_A 8 KSVTSAISLLAKAER---PLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFA-LANADVV 83 (177) T ss_dssp HHHHHHHHHHHHCSS---EEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHH-HHHCSEE T ss_pred HHHHHHHHHHHCCCC---CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HCCCCCC T ss_conf 999999987653369---879995353332579999999753258752211113456666864335440212-0320002 Q ss_pred EEEEEE Q ss_conf 431122 Q gi|254780570|r 87 CLAGYM 92 (205) Q Consensus 87 v~~g~~ 92 (205) ++.|.. T Consensus 84 i~iG~~ 89 (177) T 2q28_A 84 MLVGAR 89 (177) T ss_dssp EEESCC T ss_pred CCCCCC T ss_conf 222343 No 209 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:706-942,A:1014-1054) Probab=30.66 E-value=34 Score=14.62 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=38.6 Q ss_pred CCCC-H--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEE Q ss_conf 6985-0--189999999739998479999976888878889986089504630132332210124321000123430364 Q gi|254780570|r 11 SGEG-T--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLIC 87 (205) Q Consensus 11 SG~G-s--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv 87 (205) +|.| | +++....++..+. . +++-+-+.+.--.++++.+....-+-.....+.++..+.+...+....++++| T Consensus 36 pGsGKTtl~l~~~~~~~~~g~----~-viyidtE~~~~~~r~~~lg~~~d~l~~~~~~~~~~~~~~~~~l~~~~~~~liV 110 (278) T 3cmu_A 36 ESSGKTTLTLQVIAAAQREGK----T-CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 110 (278) T ss_dssp TTSSHHHHHHHHHHHHHTTTC----C-EEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEE T ss_pred CCCCCHHHHHHHHHHHHHCCC----E-EEECCHHHCCCHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 877703668987655553155----0-12004342128888976296245411568952899999999985356643278 Q ss_pred EEE Q ss_conf 311 Q gi|254780570|r 88 LAG 90 (205) Q Consensus 88 ~~g 90 (205) .-. T Consensus 111 IDS 113 (278) T 3cmu_A 111 VDS 113 (278) T ss_dssp ESC T ss_pred ECC T ss_conf 542 No 210 >>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* (A:113-272) Probab=30.50 E-value=35 Score=14.61 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=29.3 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCCCC Q ss_conf 665999976985-01899999997399984799999768888 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNSNA 43 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~da 43 (205) .++++.++.|.| +-+.++++.........++.++.+++... T Consensus 8 ~~~ivliagGtGItP~~sil~~l~~~~~~~~v~l~~~~r~~~ 49 (160) T 2bgi_A 8 GKRLWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVA 49 (160) T ss_dssp CSEEEEEEEGGGGHHHHHHTTCGGGGTSCSEEEEEEEESSSG T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHH T ss_conf 654047862677641558888776416751699999618789 No 211 >>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, cytoplasm, oxidoreductase, phospholipid biosynthesis, structural genomics; HET: EPE; 2.10A {Coxiella burnetii rsa 493} (A:1-204) Probab=30.43 E-value=35 Score=14.60 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=24.0 Q ss_pred CCCCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCE Q ss_conf 9866599997698-5018999999973999847999997688887888998608950 Q gi|254780570|r 1 MIRKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPT 56 (205) Q Consensus 1 M~k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~ 56 (205) |.++||+|+.+|. |+.+-..+ .+. .++|.+ .++. ....+..+..+.+. T Consensus 27 ~~~~kI~iIGaG~mG~~iA~~L---~~~--G~~V~~--~~r~-~~~~~~~~~~~~~~ 75 (204) T 3k96_A 27 PFKHPIAILGAGSWGTALALVL---ARK--GQKVRL--WSYE-SDHVDEMQAEGVNN 75 (204) T ss_dssp CCCSCEEEECCSHHHHHHHHHH---HTT--TCCEEE--ECSC-HHHHHHHHHHSSBT T ss_pred CCCCEEEEECCCHHHHHHHHHH---HHC--CCEEEE--EEEC-HHHHHHHHHCCCCC T ss_conf 7898899989599999999999---978--997899--9828-99999999739887 No 212 >>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Pyrococcus horikoshii OT3} (A:1-129) Probab=29.69 E-value=36 Score=14.51 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=33.6 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCCCC----HHHHHHHHCCCCEEEEECCCC Q ss_conf 66599997698-50-1899999997399984799999768888----788899860895046301323 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNSNA----QGLVKARKEKVPTFPIPYKDY 64 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~da----~~l~~a~~~~Ip~~~i~~~~~ 64 (205) +.|+++.+||+ .| .+..++.... .+..+..+-.+.... ...+.|++.|++.+.++..+. T Consensus 22 ~~~v~v~~SGG~DS~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 86 (129) T 2e18_A 22 NNGVVIGISGGVDSATVAYLATKAL---GKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVINIKPI 86 (129) T ss_dssp TTCEEEECCSSHHHHHHHHHHHHHH---CGGGEEEEECCSSCSTHHHHHHHHHHHHTCEEEECCCHHH T ss_pred CCCEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCHH T ss_conf 9969997887799999999999845---7816677621455530037899999874556332333268 No 213 >>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} (A:) Probab=29.64 E-value=36 Score=14.51 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=24.7 Q ss_pred CCEEEEEECCCCHHHH--HHHHHHHCCCCCCEEEEEEECC Q ss_conf 6659999769850189--9999997399984799999768 Q gi|254780570|r 3 RKNIVIFISGEGTNML--SLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 3 k~riavl~SG~Gsnl~--~Il~~~~~~~~~~eI~~Visn~ 40 (205) ++|+++.+||.++..+ .++++.... ...++.+|+|.. T Consensus 19 ~k~ill~itGs~~~~~~~~~i~~L~~~-~~~~v~vi~t~~ 57 (206) T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDI-PGLEVAVVTTER 57 (206) T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC----CEEEEEEECTG T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHH-CCCEEEEEECHH T ss_conf 866999971489999899999998734-598899997869 No 214 >>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} (A:1-122) Probab=29.45 E-value=34 Score=14.66 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=30.7 Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 66599997698-50189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 3 RKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 3 k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) +.|+++. |- |.--+..+.+.++-. .++++.|.. +.. . ++.++++.+. + +-+.+... T Consensus 7 ~iri~ii--G~gg~~g~~~~~~~~~~~-~~~i~~v~~-~~~-~----~~~~~~~~~~-------~-------~~~~~~~~ 63 (122) T 1oi7_A 7 ETRVLVQ--GITGREGQFHTKQMLTYG-TKIVAGVTP-GKG-G----MEVLGVPVYD-------T-------VKEAVAHH 63 (122) T ss_dssp TCEEEEE--TTTSHHHHHHHHHHHHHT-CEEEEEECT-TCT-T----CEETTEEEES-------S-------HHHHHHHS T ss_pred CCEEEEE--CCCCCHHHHHHHHHHHHC-CCEEEEECC-CCC-C----CEEECCCCCC-------C-------HHHHHCCC T ss_conf 9849998--998858789999999809-957998648-988-6----3787920347-------4-------67743467 Q ss_pred CCEEEEEEE Q ss_conf 430364311 Q gi|254780570|r 82 QPDLICLAG 90 (205) Q Consensus 82 ~~Dliv~~g 90 (205) ++|+++.+. T Consensus 64 ~vD~v~i~t 72 (122) T 1oi7_A 64 EVDASIIFV 72 (122) T ss_dssp CCSEEEECC T ss_pred CCCEEEEEC T ss_conf 876799962 No 215 >>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} (A:1-199) Probab=29.23 E-value=36 Score=14.46 Aligned_cols=55 Identities=16% Similarity=0.380 Sum_probs=32.9 Q ss_pred CCEEEEEECCC-CH-HHHHHHHHHHCCCCCCEEEEEEECCC-------------C-CHHHHHHHHCCCCEEEEECC Q ss_conf 66599997698-50-18999999973999847999997688-------------8-87888998608950463013 Q gi|254780570|r 3 RKNIVIFISGE-GT-NMLSLIQATKKNDYPAEIVGVFSDNS-------------N-AQGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~-Gs-nl~~Il~~~~~~~~~~eI~~Visn~~-------------d-a~~l~~a~~~~Ip~~~i~~~ 62 (205) .+|++|.+||+ .| .+..++.. ...++..+..+.- + ....+.|++.++|..+++.. T Consensus 9 ~~kvvv~~SGG~DS~v~l~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~v~~~~ 79 (199) T 2hma_A 9 KTRVVVGXSGGVDSSVTALLLKE-----QGYDVIGIFXKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFE 79 (199) T ss_dssp GSEEEEECCSSHHHHHHHHHHHH-----TTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECH T ss_pred CCEEEEECCCCHHHHHHHHHHHH-----CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 78799993686999999999987-----699579999988767777887773777999999999859978997036 No 216 >>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} (A:109-229) Probab=29.20 E-value=36 Score=14.46 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=43.9 Q ss_pred CEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCCCCHH--HH----HHHHCCCCEEEEECCCCCCCCCHHHHHHH Q ss_conf 65999976985-0189999999739998479999976888878--88----99860895046301323322101243210 Q gi|254780570|r 4 KNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNSNAQG--LV----KARKEKVPTFPIPYKDYISRREHEKAILM 76 (205) Q Consensus 4 ~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~da~~--l~----~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~ 76 (205) +++++++.|.| +-+.++++....+. ..++.++.+++..... .+ .++..+..+..... ++.....+.+ T Consensus 4 ~~~i~iagG~GiaP~~s~l~~~~~~~-~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 77 (121) T 2pia_A 4 KSFILVAGGIGITPMLSMARQLRAEG-LRSFRLYYLTRDPEGTAFFDELTSDEWRSDVKIHHDHG-----DPTKAFDFWS 77 (121) T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHHC-SSEEEEEEEESCGGGCTTHHHHHSTTTTTTEEEEECTT-----CTTSCCCHHH T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC-CCCCEEEEECCCHHHHHCHHHHHHHCCCCCEEEEEECC-----CCCCCCCCCC T ss_conf 40899982577760899999998721-47725898324677752899998531247336764046-----7654311213 Q ss_pred HCCCCCCE-EEEEEEEEEECCCHHHHC Q ss_conf 00123430-364311222057213210 Q gi|254780570|r 77 QLSSIQPD-LICLAGYMRLLSRDFVES 102 (205) Q Consensus 77 ~l~~~~~D-liv~~g~~~il~~~~l~~ 102 (205) .+.+...| .+.++| |+.++.. T Consensus 78 ~~~~~~~~~~v~vCG-----p~~m~~~ 99 (121) T 2pia_A 78 VFEKSKPAQHVYCCG-----PQALMDT 99 (121) T ss_dssp HHSSCCTTEEEEEES-----CHHHHHH T ss_pred CCCCCCCCCEEEEEC-----CHHHHHH T ss_conf 224678755799945-----4788999 No 217 >>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} (A:1-256,A:463-482) Probab=28.93 E-value=37 Score=14.43 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=10.7 Q ss_pred EEEECCCCCCHHHHHHHHH Q ss_conf 9987189989999999999 Q gi|254780570|r 155 AAVPVSSQDTESSLSQKVL 173 (205) Q Consensus 155 ~~~~i~~~d~~~~l~~rv~ 173 (205) ...+|..+.++-.|.+-+. T Consensus 251 ~V~pVG~~~~~~~~~~~~~ 269 (276) T 2pq6_A 251 SIYPIGGGCSYMNLNKVIK 269 (276) T ss_dssp TEEECCTCHHHHHHHHHHH T ss_pred EECCCCCCCHHHHHHHHHH T ss_conf 0201459958999999999 No 218 >>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} (A:206-338) Probab=28.74 E-value=37 Score=14.41 Aligned_cols=40 Identities=18% Similarity=0.406 Sum_probs=29.6 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 665999976985-0189999999739998479999976888 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNSN 42 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~d 42 (205) .+++++++.|.| +-+.++++.........++.++.+++.. T Consensus 5 ~~~lilia~G~GiaP~~s~l~~~~~~~~~~~i~l~~~~r~~ 45 (133) T 1krh_A 5 KRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQD 45 (133) T ss_dssp SSCEEEEEEGGGHHHHHHHHHHHHHHCCSSCEEEEEEESSG T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH T ss_conf 56249997988755599999999861445623798714898 No 219 >>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics; 2.01A {Thermus thermophilus HB8} (A:1-147,A:317-345) Probab=28.11 E-value=38 Score=14.33 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=21.6 Q ss_pred CCC-CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 986-65999976985018999999973999847999997688 Q gi|254780570|r 1 MIR-KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 1 M~k-~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) |.+ .|++|+.. +|.-=..+++...+ .-.+++..+.+.+. T Consensus 1 Ms~~~kV~IvGA-tG~vG~~l~~~L~~-~p~~ei~~l~~~~~ 40 (176) T 2ozp_A 1 MTGKKTLSIVGA-SGYAGGEFLRLALS-HPYLEVKQVTSRRF 40 (176) T ss_dssp ---CEEEEEETT-TSHHHHHHHHHHHT-CTTEEEEEEBCSTT T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHH-CCCCEEEEEECCCC T ss_conf 999988999893-61999999999980-99967999981687 No 220 >>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} (A:349-566) Probab=28.11 E-value=26 Score=15.46 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=9.5 Q ss_pred CCEEEEEEEECCCCCCHHHHHH Q ss_conf 6267789987189989999999 Q gi|254780570|r 149 GPIIAQAAVPVSSQDTESSLSQ 170 (205) Q Consensus 149 G~Ii~q~~~~i~~~d~~~~l~~ 170 (205) ||.+. .+.+++.+....... T Consensus 175 gp~li--ev~~~~~~~~~~~~~ 194 (218) T 2vbi_A 175 GPTLI--ECQIDRTDCTDMLVQ 194 (218) T ss_dssp SCEEE--EEECCTTCCCHHHHH T ss_pred CEEEE--EEEECCHHCCHHHHH T ss_conf 74999--999871326843355 No 221 >>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} (A:1-130,A:276-315) Probab=28.02 E-value=38 Score=14.32 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=55.6 Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHC--CCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 66599997698-501899999997399984799999768888788899860--895046301323322101243210001 Q gi|254780570|r 3 RKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKE--KVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 3 k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~--~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) +.|+++...|. |+. .+.++... -+++++.+.+-++ ++++.. +.+.+ ..+-+.+. T Consensus 10 ~lrvgIIG~G~~g~~---~~~~l~~~-~~~~ivai~d~~~-----~~~~~~~~~~~~~--------------~d~eell~ 66 (170) T 3c1a_A 10 PVRLALIGAGRWGKN---YIRTIAGL-PGAALVRLASSNP-----DNLALVPPGCVIE--------------SDWRSVVS 66 (170) T ss_dssp CEEEEEEECTTTTTT---HHHHHHHC-TTEEEEEEEESCH-----HHHTTCCTTCEEE--------------SSTHHHHT T ss_pred CEEEEEECCCHHHHH---HHHHHHHC-CCCEEEEEECCCH-----HHHHHHCCCCCCC--------------CCHHHHHH T ss_conf 818999999789999---99999708-9928999987999-----9999752478623--------------88999971 Q ss_pred CCCCEEEEEEEEEEECCCHHHHCCCC--CEEECCCCCCCCCCCCCCC-CCHHCCCCCCCCCCEEEECCCCCCCCE Q ss_conf 23430364311222057213210665--4231353223332444212-100002465344530331232186626 Q gi|254780570|r 80 SIQPDLICLAGYMRLLSRDFVESYKN--KILNIHPSLLPLFPGLHTH-RRVLQSGIKITGCTVHMVTANMDEGPI 151 (205) Q Consensus 80 ~~~~Dliv~~g~~~il~~~~l~~~~~--~~iN~HpslLP~yrG~~~~-~~ai~~g~~~~G~TiH~v~~~~D~G~I 151 (205) +.++|+++.+.-...-.+......+. .++==.|. +.++- -+.+..-.+..|+.++..-..-|..|. T Consensus 67 ~~~iD~VvIatp~~~H~e~a~~al~aGkhVl~EKPl------a~~~ee~~eL~~~a~~~g~~v~V~~~~R~~~~~ 135 (170) T 3c1a_A 67 APEVEAVIIATPPATHAEITLAAIASGKAVLVEKPL------TLDLAEAEAVAAAAKATGVXVWVEHTQLDEXPL 135 (170) T ss_dssp CTTCCEEEEESCGGGHHHHHHHHHHTTCEEEEESSS------CSCHHHHHHHHHHHHHHCCCEEEECGGGCCCHH T ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCC------CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHH T ss_conf 746441001233001223210000233110125453------211122332012332034333223322365699 No 222 >>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} (A:) Probab=27.99 E-value=38 Score=14.32 Aligned_cols=73 Identities=8% Similarity=0.122 Sum_probs=40.0 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .+++++|+ |.|.--..+.+..... .++|.. +..+| ...+.++..+..++..+..+ .+.++...-. T Consensus 5 ~~~~v~Ii--G~G~iG~~ia~~L~~~--G~~V~v-id~~~--~~~~~~~~~~~~~~~~d~~~--------~~~l~~~~~~ 69 (141) T 3llv_A 5 GRYEYIVI--GSEAAGVGLVRELTAA--GKKVLA-VDKSK--EKIELLEDEGFDAVIADPTD--------ESFYRSLDLE 69 (141) T ss_dssp -CCSEEEE--CCSHHHHHHHHHHHHT--TCCEEE-EESCH--HHHHHHHHTTCEEEECCTTC--------HHHHHHSCCT T ss_pred CCCCEEEE--CCCHHHHHHHHHHHHC--CCCEEE-EECHH--HHHHHHHCCCCEEEEECCCC--------HHHHHHHHHH T ss_conf 87969998--9988999999999987--993899-74338--89999870783799944543--------5677655575 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) ++|.++.+ T Consensus 70 ~~d~vi~~ 77 (141) T 3llv_A 70 GVSAVLIT 77 (141) T ss_dssp TCSEEEEC T ss_pred HCCEEEEE T ss_conf 26899998 No 223 >>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (A:1-130) Probab=27.82 E-value=37 Score=14.44 Aligned_cols=65 Identities=8% Similarity=-0.013 Sum_probs=29.2 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 66599997698501899999997399984799999768888788899860895046301323322101243210001234 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) +.|+++.+-| |..-...+.+.... -..+++.|.. + +.. ++..++|.+. + +.+.+...+ T Consensus 14 ~~rvaiiG~g-g~~~~~~~~~l~~~-~~~~i~~v~~-~-~~~----~~~~~~~~y~-------~-------~~~~~~~~~ 71 (130) T 2fp4_A 14 NTKVICQGFT-GKQGTFHSQQALEY-GTNLVGGTTP-G-KGG----KTHLGLPVFN-------T-------VKEAKEQTG 71 (130) T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHH-TCEEEEEECT-T-CTT----CEETTEEEES-------S-------HHHHHHHHC T ss_pred CCEEEEECCC-CCHHHHHHHHHHHH-CCCEEEEECC-C-CCC----CEEECCCHHH-------H-------HHHHHHCCC T ss_conf 9869998898-84645999999984-8957987479-9-787----1443730074-------5-------999974124 Q ss_pred CEEEEEE Q ss_conf 3036431 Q gi|254780570|r 83 PDLICLA 89 (205) Q Consensus 83 ~Dliv~~ 89 (205) +|+++.+ T Consensus 72 vD~V~i~ 78 (130) T 2fp4_A 72 ATASVIY 78 (130) T ss_dssp CCEEEEC T ss_pred CCEEEEC T ss_conf 3057631 No 224 >>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} (A:120-236) Probab=27.53 E-value=39 Score=14.26 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=24.2 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 986659999769850189999999739998479999976888878889986 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARK 51 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~ 51 (205) |-.+|++|+ |.|.-.+++..+....... +| ++.||.....-+.+++ T Consensus 1 l~~k~vli~--GaGg~a~ai~~~L~~~g~~-~i--~I~~R~~~~a~~l~~~ 46 (117) T 3fbt_A 1 IKNNICVVL--GSGGAARAVLQYLKDNFAK-DI--YVVTRNPEKTSEIYGE 46 (117) T ss_dssp CTTSEEEEE--CSSTTHHHHHHHHHHTTCS-EE--EEEESCHHHHHHHCTT T ss_pred CCCCEEEEE--CCCCHHHHHHHHHHHCCCC-EE--EEEECCHHHHHHHHHH T ss_conf 566523554--2563222233334415552-69--9874003566766745 No 225 >>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} (A:) Probab=27.33 E-value=39 Score=14.24 Aligned_cols=82 Identities=7% Similarity=-0.033 Sum_probs=34.0 Q ss_pred EEEECCCCHHH-HHHHHHHHCCCCCCEEEEEEECCCCCHH---HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC- Q ss_conf 99976985018-9999999739998479999976888878---889986089504630132332210124321000123- Q gi|254780570|r 7 VIFISGEGTNM-LSLIQATKKNDYPAEIVGVFSDNSNAQG---LVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI- 81 (205) Q Consensus 7 avl~SG~Gsnl-~~Il~~~~~~~~~~eI~~Visn~~da~~---l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~- 81 (205) .+|+.|.+|.+ +++.+.+.+. .++|+ ++++..... .+...+.+-... +...+..+.+...+.+.+.+.+. T Consensus 3 ~~lITGassGIG~aiA~~la~~--Ga~Vi--~~~r~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (244) T 1zmo_A 3 IALVTHARHFAGPAAVEALTQD--GYTVV--CHDASFADAAERQRFESENPGTIA-LAEQKPERLVDATLQHGEAIDTIV 77 (244) T ss_dssp EEEESSTTSTTHHHHHHHHHHT--TCEEE--ECCGGGGSHHHHHHHHHHSTTEEE-CCCCCGGGHHHHHGGGSSCEEEEE T ss_pred EEEECCCCCHHHHHHHHHHHHC--CCEEE--EEECCHHHHHHHHHHHHHCCCCEE-EEHHHHHHHHHHHHHHCCCCCEEE T ss_conf 9999183538999999999986--99999--997985889999998622478189-548999999999999759986898 Q ss_pred -CCEEEEEEEEEE Q ss_conf -430364311222 Q gi|254780570|r 82 -QPDLICLAGYMR 93 (205) Q Consensus 82 -~~Dliv~~g~~~ 93 (205) ..|+++.+++.. T Consensus 78 ~~~~~i~n~~~~~ 90 (244) T 1zmo_A 78 SNDYIPRPMNRLP 90 (244) T ss_dssp ECCCCCTTGGGCC T ss_pred ECCEECCCCCCCC T ss_conf 5663048767688 No 226 >>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} (A:1-78,A:260-280) Probab=27.15 E-value=37 Score=14.39 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=41.2 Q ss_pred EEEECCC--CC-HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEE--EEEEEE-ECCCHHHHCCCCCEE Q ss_conf 9997688--88-78889986089504630132332210124321000123430364--311222-057213210665423 Q gi|254780570|r 35 GVFSDNS--NA-QGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLIC--LAGYMR-LLSRDFVESYKNKIL 108 (205) Q Consensus 35 ~Visn~~--da-~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv--~~g~~~-il~~~~l~~~~~~~i 108 (205) +++.++. +. --++.+++.|+++..++-++....-.... .. ....|+++ +.++.| +-...+++.+...++ T Consensus 3 ~ilYdriR~EEKlLi~al~~rGv~v~~I~~~~~~~~l~~~~---~~--~~~~DVvL~R~vSh~Ral~~a~~lEs~GvpvV 77 (99) T 1uc8_A 3 AILYDRIRPDERMLFERAEALGLPYKKVYVPALPMVLGERP---KE--LEGVTVALERCVSQSRGLAAARYLTALGIPVV 77 (99) T ss_dssp EEEESSCCHHHHHHHHHHHHHTCCEEEEEGGGCCEETTBCC---GG--GTTCCEEEECCSSHHHHHHHHHHHHHTTCCEE T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCC---CC--CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEE T ss_conf 99955898899999999997699799995896512257764---32--10342899984145300798888997898396 Q ss_pred ECCCC Q ss_conf 13532 Q gi|254780570|r 109 NIHPS 113 (205) Q Consensus 109 N~Hps 113 (205) |.|.. T Consensus 78 N~~~~ 82 (99) T 1uc8_A 78 NVHTT 82 (99) T ss_dssp SHHHH T ss_pred CHHHH T ss_conf 99887 No 227 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:361-593,A:665-705) Probab=26.50 E-value=40 Score=14.14 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=40.3 Q ss_pred CCCC-H--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEE Q ss_conf 6985-0--189999999739998479999976888878889986089504630132332210124321000123430364 Q gi|254780570|r 11 SGEG-T--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLIC 87 (205) Q Consensus 11 SG~G-s--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv 87 (205) +|.| | ||+....++..+.. + ++-+-+.+..-.++++.++..--+-.....+-+.....+.+.+.+..++++| T Consensus 32 pGsGKTtL~Lql~~~~~~~g~~----v-lyIdtE~~~~~~r~~~lg~~~d~l~~~~~~~~~~~~~~i~~l~~~~~~~liV 106 (274) T 3cmw_A 32 ESSGKTTLTLQVIAAAQREGKT----C-AFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 106 (274) T ss_dssp TTSSHHHHHHHHHHHHHHTTCC----E-EEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEE T ss_pred CCCCCHHHHHHHHHHHHHCCCE----E-EEECHHHCCCHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 8778102479988888865884----8-9942121149899998098747750008970788999999886437716999 Q ss_pred EEE Q ss_conf 311 Q gi|254780570|r 88 LAG 90 (205) Q Consensus 88 ~~g 90 (205) .-. T Consensus 107 IDS 109 (274) T 3cmw_A 107 VDS 109 (274) T ss_dssp ESC T ss_pred ECH T ss_conf 700 No 228 >>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S, lyase; HET: FMN; 2.00A {Arabidopsis thaliana} (A:) Probab=26.16 E-value=41 Score=14.10 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=26.0 Q ss_pred CCEEEEEECCCCHHHH--HHHHHHHCCCCCCEEEEEEECC Q ss_conf 6659999769850189--9999997399984799999768 Q gi|254780570|r 3 RKNIVIFISGEGTNML--SLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 3 k~riavl~SG~Gsnl~--~Il~~~~~~~~~~eI~~Visn~ 40 (205) ++|+.+.++|.++..+ .+++..++ .++|..|+|.. T Consensus 19 ~k~ill~vtGs~~~~~~~~ll~~L~~---~~~V~vv~T~~ 55 (209) T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE---WAEVRAVVTKS 55 (209) T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT---TSEEEEEECTG T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHC---CCEEEEEECHH T ss_conf 98699998269999999999999862---78799998578 No 229 >>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242) Probab=26.01 E-value=41 Score=14.08 Aligned_cols=72 Identities=7% Similarity=-0.052 Sum_probs=39.5 Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCH-----HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 999999973999847999997688887-----888998608950463013233221012432100012343036431122 Q gi|254780570|r 18 LSLIQATKKNDYPAEIVGVFSDNSNAQ-----GLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYM 92 (205) Q Consensus 18 ~~Il~~~~~~~~~~eI~~Visn~~da~-----~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv~~g~~ 92 (205) +++.+....... -++..+..|.+-.. ..+..++.|+.......-. .+..+|+. .+..+++.+||.|++.++. T Consensus 5 ~~~~~~~~~~~~-~~v~ii~~d~~~g~~~~~~~~~~l~~~G~~iv~~~~~~-~~~~d~~~-~i~~i~~~~~d~v~~~~~~ 81 (119) T 3hut_A 5 PNNAAWXIGDGF-TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVP-PGNRRFDD-VIDEIEDEAPQAIYLAXAY 81 (119) T ss_dssp HHHHHHHHHTTC-CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC-TTCCCCHH-HHHHHHHHCCSEEEEESCH T ss_pred HHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECC-CCCCCHHH-HHHHHHHCCCCEEEEECCH T ss_conf 999988876078-16999605672658999998644540697899999559-98731158-9999986599999997366 No 230 >>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} (B:119-258) Probab=25.65 E-value=42 Score=14.04 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=59.8 Q ss_pred CCCEEEEEECC-CCHHHH--HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC Q ss_conf 86659999769-850189--999999739998479999976888878889986089504630132332210124321000 Q gi|254780570|r 2 IRKNIVIFISG-EGTNML--SLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQL 78 (205) Q Consensus 2 ~k~riavl~SG-~Gsnl~--~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l 78 (205) .++|+.+...+ ..+.+- -+-..++.. .+++...-.+.|.....+.+++.+.....++........ .-..+.+.+ T Consensus 4 ~~~~vl~~~~~gd~H~lG~~~va~~lr~~--G~~V~~lG~~~p~~~l~~~~~~~~~d~V~lS~~~~~~~~-~~~~~~~~l 80 (140) T 2i2x_B 4 TKGTVVCHVAEGDVHDIGKNIVTALLRAN--GYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMY-AFKEVNDML 80 (140) T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHT--TCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTT-HHHHHHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHC--CCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHH-HHHHHHHHH T ss_conf 54304663148867668999999999977--990896588898799999999717885986523453258-899999999 Q ss_pred CCCCCEEEEEEEEEEECCCHHHHCCC Q ss_conf 12343036431122205721321066 Q gi|254780570|r 79 SSIQPDLICLAGYMRLLSRDFVESYK 104 (205) Q Consensus 79 ~~~~~Dliv~~g~~~il~~~~l~~~~ 104 (205) ++..++..+++| +..+++++..... T Consensus 81 r~~~~~~~v~vG-G~~~~~~~~~~~g 105 (140) T 2i2x_B 81 LENGIKIPFACG-GGAVNQDFVSQFA 105 (140) T ss_dssp HTTTCCCCEEEE-STTCCHHHHHTST T ss_pred HHCCCCCEEEEE-CCCCCHHHHHHHC T ss_conf 846999739988-9869999999829 No 231 >>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} (A:1-128) Probab=25.21 E-value=43 Score=13.99 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=42.3 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE-ECCCCC--------------------------HHHHHHHHCCCC Q ss_conf 66599997698501899999997399984799999-768888--------------------------788899860895 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVF-SDNSNA--------------------------QGLVKARKEKVP 55 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Vi-sn~~da--------------------------~~l~~a~~~~Ip 55 (205) .+||.+-+.|+-++..++-.+..--.....+..+. ...+.. ...+.+++.+++ T Consensus 17 ~~~ILvavD~S~~s~~al~~a~~la~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (128) T 1tq8_A 17 YKTVVVGTDGSDSSXRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAK 96 (128) T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCC T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99699998999899999999999985489879999996156554422100025689999999999999999999976996 Q ss_pred EEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEE Q ss_conf 0463013233221012432100012343036431 Q gi|254780570|r 56 TFPIPYKDYISRREHEKAILMQLSSIQPDLICLA 89 (205) Q Consensus 56 ~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv~~ 89 (205) ...+-.. .....+.|.+..++.++|+||+. T Consensus 97 ~~~~~v~----~G~~~~~I~~~a~~~~~DlIViG 126 (128) T 1tq8_A 97 NVEERPI----VGAPVDALVNLADEEKADLLVVG 126 (128) T ss_dssp EEEEEEE----CSSHHHHHHHHHHHTTCSEEEEE T ss_pred EEEEEEE----ECCHHHHHHHHHHCCCEEEEEEC T ss_conf 2999998----16889999876403530589964 No 232 >>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} (A:) Probab=25.10 E-value=43 Score=13.97 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=40.8 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCC Q ss_conf 98665999976985018999999973999847999997688887888998608950463013233221012432100012 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSS 80 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~ 80 (205) +.+++++|+ |.|.--..+.+..++.. .++. |+.. +..-.+.++..|+.++.-+..+ .+.+....- T Consensus 5 ~~~~~iiIi--G~g~~g~~ia~~L~~~g--~~v~-vid~--~~~~~~~~~~~g~~~i~gd~~~--------~~~l~~a~i 69 (140) T 3fwz_A 5 DICNHALLV--GYGRVGSLLGEKLLASD--IPLV-VIET--SRTRVDELRERGVRAVLGNAAN--------EEIXQLAHL 69 (140) T ss_dssp CCCSCEEEE--CCSHHHHHHHHHHHHTT--CCEE-EEES--CHHHHHHHHHTTCEEEESCTTS--------HHHHHHTTG T ss_pred CCCCCEEEE--CCCHHHHHHHHHHHHCC--CCEE-EEEC--CHHHHHHHHHCCCEEEECCCCC--------HHHHHHCCC T ss_conf 677999998--96889999999999779--9889-9989--8899999996298389727889--------999950382 Q ss_pred CCCEEEEEE Q ss_conf 343036431 Q gi|254780570|r 81 IQPDLICLA 89 (205) Q Consensus 81 ~~~Dliv~~ 89 (205) .+.|.+++. T Consensus 70 ~~a~~vi~~ 78 (140) T 3fwz_A 70 ECAKWLILT 78 (140) T ss_dssp GGCSEEEEC T ss_pred CCCCEEEEC T ss_conf 418899987 No 233 >>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* (A:1-223) Probab=25.04 E-value=34 Score=14.66 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=22.9 Q ss_pred CCCCE--EEEEECCCCHH-----------------HHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 98665--99997698501-----------------899999997399984799999768 Q gi|254780570|r 1 MIRKN--IVIFISGEGTN-----------------MLSLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 1 M~k~r--iavl~SG~Gsn-----------------l~~Il~~~~~~~~~~eI~~Visn~ 40 (205) |++++ .+||+.|.||= ++..++.+..... .+++.++..+ T Consensus 1 M~~~~~~aIIlAaG~GsRl~~~tPK~li~i~Gkpli~~~i~~l~~~g~-~~iii~~~~~ 58 (223) T 2v0h_A 1 MTKKALSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLGS-ENIHLIYGHG 58 (223) T ss_dssp ---CCEEEEEECCCCCGGGCSSSCGGGSEETTEEHHHHHHHHHHHTTC-SCEEEEECTT T ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHEEECCHHHHHHHHHHHHHCCC-CEEEEEECCC T ss_conf 997775799988878777798998687599988799999999997799-8799991799 No 234 >>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} (A:1-197) Probab=24.88 E-value=37 Score=14.44 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=24.6 Q ss_pred CCCCEEEEEECCCCHH-----------------HHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 9866599997698501-----------------899999997399984799999768 Q gi|254780570|r 1 MIRKNIVIFISGEGTN-----------------MLSLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 1 M~k~riavl~SG~Gsn-----------------l~~Il~~~~~~~~~~eI~~Visn~ 40 (205) |.+.+.+||+.|.||= ++-+++...+... .+++.|.++. T Consensus 1 M~~~~aiIlAaG~gsRl~~~~pK~Ll~i~Gkpll~~~i~~l~~~~~-~~~vvv~~~~ 56 (197) T 1w55_A 1 MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYP-FKKIVVTSSN 56 (197) T ss_dssp -CCEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSC-CSCEEEEESC T ss_pred CCCEEEEEECCEEEEECCCCCCHHHEEECCEEHHHHHHHHHHCCCC-CCEEEEECCC T ss_conf 9952799968830011793994798044789989999999964899-8999998997 No 235 >>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} (A:1-183) Probab=24.59 E-value=44 Score=13.91 Aligned_cols=79 Identities=10% Similarity=-0.056 Sum_probs=46.5 Q ss_pred CCCH--HHHHHHHHHHCCCCCCEEEEEEECCC--CC----HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 9850--18999999973999847999997688--88----7888998608950463013233221012432100012343 Q gi|254780570|r 12 GEGT--NMLSLIQATKKNDYPAEIVGVFSDNS--NA----QGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQP 83 (205) Q Consensus 12 G~Gs--nl~~Il~~~~~~~~~~eI~~Visn~~--da----~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~ 83 (205) |.|. .+..+++.. +.+-++|+|++. +. ......+..++.+..++.-......+.-.+..+..++.++ T Consensus 15 G~g~~~~l~~~l~~~-----~~~~~livt~~~~~~~~~~~~i~~~l~~~~i~~~~~~~~~~~~t~~~v~~~~~~~~~~~~ 89 (183) T 1rrm_A 15 GRGAVGALTDEVKRR-----GYQKALIVTDKTLVQCGVVAKVTDKXDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGA 89 (183) T ss_dssp STTGGGGHHHHHHHH-----TCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTC T ss_pred CCCHHHHHHHHHHHC-----CCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 876999999999976-----998799998977565827999999998759839998784799799999998655503588 Q ss_pred EEEEEEEEEEEC Q ss_conf 036431122205 Q gi|254780570|r 84 DLICLAGYMRLL 95 (205) Q Consensus 84 Dliv~~g~~~il 95 (205) |.++-.|=+..+ T Consensus 90 D~iiaiGGGsv~ 101 (183) T 1rrm_A 90 DYLIAIGGGSPQ 101 (183) T ss_dssp SEEEEEESHHHH T ss_pred CEEEECCCCCCC T ss_conf 879976886410 No 236 >>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* (A:) Probab=24.54 E-value=44 Score=13.90 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=20.9 Q ss_pred CCCCEE--EEEECCCCHH--------------HHHHHHHHHCCCCCCEEEEEEE Q ss_conf 986659--9997698501--------------8999999973999847999997 Q gi|254780570|r 1 MIRKNI--VIFISGEGTN--------------MLSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 1 M~k~ri--avl~SG~Gsn--------------l~~Il~~~~~~~~~~eI~~Vis 38 (205) |+++++ +||+.|.||= +...+++..+... .++..|.+ T Consensus 14 ~~~~~~~aIIlAaG~GtRl~PK~l~~i~GkplI~~~l~~l~~~g~-~~~ivv~~ 66 (264) T 3k8d_A 14 GSHMSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGA-ERIIVATD 66 (264) T ss_dssp ----CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTTC-SEEEEEES T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCEEEECC T ss_conf 688857999815877888998400122895199999999996699-96798513 No 237 >>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} (G:) Probab=24.52 E-value=25 Score=15.61 Aligned_cols=17 Identities=47% Similarity=0.720 Sum_probs=12.6 Q ss_pred CCCEE-ECCCCCCCCCCC Q ss_conf 65423-135322333244 Q gi|254780570|r 104 KNKIL-NIHPSLLPLFPG 120 (205) Q Consensus 104 ~~~~i-N~HpslLP~yrG 120 (205) .++++ |+||+|||+=+| T Consensus 102 ~gGV~p~i~~~ll~kk~~ 119 (120) T 2f8n_G 102 SGGVLPNIHPELLAKKRG 119 (120) T ss_dssp TCCCCCCCCGGGSCCC-- T ss_pred CCCCCCCCCHHHCCCCCC T ss_conf 785048748877367669 No 238 >>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii ME49} (A:) Probab=24.49 E-value=44 Score=13.89 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=19.2 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH Q ss_conf 6659999769850189999999739998479999976888878 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQG 45 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~ 45 (205) ++||+|. |.|+--.++......+.+ .++.++=.|.+...+ T Consensus 9 ~~KI~ii--GaG~vg~~~~~~l~~~~~-~el~L~Di~~~~l~~ 48 (331) T 1pzg_A 9 RKKVAMI--GSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEG 48 (331) T ss_dssp CCEEEEE--CCSHHHHHHHHHHHHHTC-CEEEEECSSSSHHHH T ss_pred CCEEEEE--CCCHHHHHHHHHHHCCCC-CEEEEEECCCCCCHH T ss_conf 9808998--979899999999970799-879999289991588 No 239 >>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} (A:97-232) Probab=24.27 E-value=44 Score=13.87 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=29.0 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 665999976985-018999999973999847999997688 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) .+++++++.|.| +-+.++++...+.....++.++.+.+. T Consensus 6 ~~~~iliagG~GIaP~~s~l~~~~~~~~~~~v~l~~~~r~ 45 (136) T 1qfj_A 6 ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGRE 45 (136) T ss_dssp SSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEESS T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 6758999369751319999999998099998999985388 No 240 >>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} (A:373-590) Probab=24.17 E-value=44 Score=13.85 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=16.3 Q ss_pred EEEEEECCCCH---HHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 59999769850---189999999739998479999976888 Q gi|254780570|r 5 NIVIFISGEGT---NMLSLIQATKKNDYPAEIVGVFSDNSN 42 (205) Q Consensus 5 riavl~SG~Gs---nl~~Il~~~~~~~~~~eI~~Visn~~d 42 (205) |-++.++|-|+ ++..|.-+.+. +..+..|+-||.. T Consensus 73 ~~Vv~i~GDG~f~~~~~~L~ta~~~---~~pi~~vv~nN~~ 110 (218) T 1ybh_A 73 AIVVDIDGDGSFIMNVQELATIRVE---NLPVKVLLLNNQH 110 (218) T ss_dssp SCEEEEEEHHHHHHTTTHHHHHHHT---TCCEEEEEEECSB T ss_pred CEEEEEECCCCHHCCHHHHHHHHHH---CCCEEEEEEECCC T ss_conf 8699996783131156899999997---8793999996998 No 241 >>3eyw_A C-terminal domain of glutathione-regulated potassium-efflux system protein KEFC fused...; KTN, RCK, K+ channel, K+ transport, K+ efflux; HET: FMN NAD; 2.40A {Escherichia coli K12} (A:1-123) Probab=24.04 E-value=45 Score=13.84 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=37.0 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) +++|++|+ |.|.--..+.+...+. .++|. ++. + +...++.++..+.+....+..+. ..+....-. T Consensus 3 ~~~~v~Ii--G~G~~G~~ia~~L~~~--G~~V~-v~d-~-~~~~~~~~~~~g~~~~~~d~~~~--------~~~~~~~~~ 67 (123) T 3eyw_A 3 HGMRVIIA--GFGRFGQITGRLLLSS--GVKMV-VLD-H-DPDHIETLRKFGMKVFYGDATRM--------DLLESAGAA 67 (123) T ss_dssp --CCEEEE--CCSHHHHHHHHHHHHT--TCCEE-EEE-S-CHHHHHHHHHTTCCCEESCTTCH--------HHHHHHTTT T ss_pred CCCEEEEE--CCCHHHHHHHHHHHHC--CCCEE-EEE-C-CHHHHHHHHHCCCEEEEECCCCH--------HHHHHCCCC T ss_conf 88989998--9888999999999968--99889-998-9-99999999976990999538999--------999856976 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) ++|+++++ T Consensus 68 ~ad~vi~~ 75 (123) T 3eyw_A 68 KAEVLINA 75 (123) T ss_dssp TCSEEEEC T ss_pred CCCEEEEE T ss_conf 48999997 No 242 >>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} (A:1-155,A:337-354) Probab=23.93 E-value=45 Score=13.82 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=22.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 98665999976985018999999973999847999997688 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) |.+.|++|.. .+|.--+.|++...+ ....+++.+....+ T Consensus 6 ~~~ikVaIvG-atG~iGr~l~rll~~-~p~~eivai~~s~~ 44 (173) T 1ys4_A 6 KXKIKVGVLG-ATGSVGQRFVQLLAD-HPXFELTALAASER 44 (173) T ss_dssp -CCEEEEEET-TTSHHHHHHHHHHTT-CSSEEEEEEEECTT T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHC-CCCCEEEEEEECCC T ss_conf 6764399999-743999999999975-99876899997575 No 243 >>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} (A:70-244) Probab=23.80 E-value=24 Score=15.65 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=48.0 Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCE----EEEECCCCCCC-----CCHHHHHHHHCCCCCCEEE Q ss_conf 18999999973999847999997688887888998608950----46301323322-----1012432100012343036 Q gi|254780570|r 16 NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPT----FPIPYKDYISR-----REHEKAILMQLSSIQPDLI 86 (205) Q Consensus 16 nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~----~~i~~~~~~~~-----~~~~~~l~~~l~~~~~Dli 86 (205) .|++|++.....--.. ..+..+-++.=.+.|+=. .++....-.++ +.|.+.+++.|.+.+..+| T Consensus 43 SL~NI~kel~~~~~~~-------~~~~~g~L~~wakQGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~vv 115 (175) T 1udg_A 43 SLRNVLAAVKNCYPEA-------RMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLV 115 (175) T ss_dssp HHHHHHHHHHHHCTTC-------CCCSCCCCHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCE T ss_pred HHHHHHHHHHHHCCCC-------CCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE T ss_conf 7899999997534777-------777788777785277787750488872545776421099999999999972889869 Q ss_pred EEEEEEEECCC-HHHHCCCCCEE-ECCCCCCCC--CCCCCCCCC Q ss_conf 43112220572-13210665423-135322333--244421210 Q gi|254780570|r 87 CLAGYMRLLSR-DFVESYKNKIL-NIHPSLLPL--FPGLHTHRR 126 (205) Q Consensus 87 v~~g~~~il~~-~~l~~~~~~~i-N~HpslLP~--yrG~~~~~~ 126 (205) ++. |+..-.+ .-+..-+.-+| --|||.|-. |.|.++... T Consensus 116 f~L-wG~~A~~~~~~~~~~h~il~~~HPSpls~~~F~~~~~F~~ 158 (175) T 1udg_A 116 FML-WGTHAQNAIRPDPRVHCVLKFSHPSPLSKVPFGTCQHFLV 158 (175) T ss_dssp EEE-ESHHHHHHCCCCTTTSEEEEECCSSTTSSSCGGGCCHHHH T ss_pred EEE-EHHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCHHHH T ss_conf 997-3466765620389998699878998454369899977999 No 244 >>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MSGPP, SGPP, hydrolase, 5-bromouracil, structural genomics; 1.50A {Leishmania naiffi} (A:83-268) Probab=23.64 E-value=22 Score=15.90 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=46.4 Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCC----EEEEECCCCCCC------CCHHHHHHHHCCCCCCE- Q ss_conf 1899999997399984799999768888788899860895----046301323322------10124321000123430- Q gi|254780570|r 16 NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVP----TFPIPYKDYISR------REHEKAILMQLSSIQPD- 84 (205) Q Consensus 16 nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip----~~~i~~~~~~~~------~~~~~~l~~~l~~~~~D- 84 (205) .|++|++..+..--.. +.|..+-++.=.+.|+= +..+....-.+. +.|.+.+++.|.+.+.+ T Consensus 43 SL~NI~keL~~~~~~~-------~~p~~g~L~~Wa~QGVLLLNt~LTv~~g~~~sH~~~~gWe~ft~~ii~~l~~~~~~~ 115 (186) T 3cxm_A 43 SLRNIYKELTTDIAGF-------QAPKHGYLQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHLSQHHPNR 115 (186) T ss_dssp HHHHHHHHHHHHSTTC-------CCCSSCCCHHHHTTTEEEEESSCCEETTCTTTTTTTSCHHHHHHHHHHHHHHHCSSC T ss_pred CHHHHHHHHHHHCCCC-------CCCCCCCCCHHHHCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 2999999999752878-------899987611152098799962478888976533344058999999999985157786 Q ss_pred EEEEEEEEEEC--CCHHHHCCCCCE-EECCCCCCCCCCCC Q ss_conf 36431122205--721321066542-31353223332444 Q gi|254780570|r 85 LICLAGYMRLL--SRDFVESYKNKI-LNIHPSLLPLFPGL 121 (205) Q Consensus 85 liv~~g~~~il--~~~~l~~~~~~~-iN~HpslLP~yrG~ 121 (205) +|++. |+..- -..+++.-+..+ -..|||.|-.+||. T Consensus 116 iVf~L-wG~~A~~~~~~i~~~~~~vl~~~HPSpls~~~~F 154 (186) T 3cxm_A 116 LVFLL-WGGYAQQKKRLIDANRHVVLENVHPSPLSANRGW 154 (186) T ss_dssp CEEEE-ESHHHHGGGGGSCTTTSEEEEECCSSHHHHTTTT T ss_pred EEEEE-ECCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC T ss_conf 69998-4666788986089878779973799962446688 No 245 >>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:1-129) Probab=23.64 E-value=45 Score=13.79 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=17.9 Q ss_pred EEEEEC--CCCCHHHHHHHHCCCCEEEEECC Q ss_conf 999976--88887888998608950463013 Q gi|254780570|r 34 VGVFSD--NSNAQGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 34 ~~Visn--~~da~~l~~a~~~~Ip~~~i~~~ 62 (205) +.|+|. .++...++.|+++|+|.+..+.. T Consensus 83 ~iiit~~~~~~~~i~~~a~~~~iPil~t~~~ 113 (129) T 1ko7_A 83 AIIVTRDLEPPEELIEAAKEHETPLITSKIA 113 (129) T ss_dssp CEEECTTCCCCHHHHHHHHHTTCCEEECCSC T ss_pred EEEEECCCCCCHHHHHHHHHHCCEEEECCCC T ss_conf 8999799999899999999819839984874 No 246 >>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:100-257) Probab=23.59 E-value=31 Score=14.96 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=26.2 Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 665999976985-0189999999739998479999976888 Q gi|254780570|r 3 RKNIVIFISGEG-TNMLSLIQATKKNDYPAEIVGVFSDNSN 42 (205) Q Consensus 3 k~riavl~SG~G-snl~~Il~~~~~~~~~~eI~~Visn~~d 42 (205) .++++.++.|.| +-+.++++...+...+..+.++.+.+.. T Consensus 7 ~~~iv~iagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~ 47 (158) T 2qdx_A 7 GKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWV 47 (158) T ss_dssp CSEEEEEEEGGGGHHHHHHTTCHHHHHHCSEEEEEEEESSG T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCH T ss_conf 63279998067733210666666764368768999834898 No 247 >>2cwd_A Low molecular weight phosphotyrosine protein phosphatase; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus HB8} (A:) Probab=23.57 E-value=46 Score=13.78 Aligned_cols=59 Identities=12% Similarity=0.034 Sum_probs=29.3 Q ss_pred CCCC-EEEEEECCCC--H-HHHHHHHHHHCC---CCCCEE--EEEEEC----CCCCHHHHHHHHCCCCEEEE Q ss_conf 9866-5999976985--0-189999999739---998479--999976----88887888998608950463 Q gi|254780570|r 1 MIRK-NIVIFISGEG--T-NMLSLIQATKKN---DYPAEI--VGVFSD----NSNAQGLVKARKEKVPTFPI 59 (205) Q Consensus 1 M~k~-riavl~SG~G--s-nl~~Il~~~~~~---~~~~eI--~~Visn----~~da~~l~~a~~~~Ip~~~i 59 (205) |.++ ||.+.+.||- | =+++|++..... .-.+++ +++... ..+.......++.|++.-.. T Consensus 1 m~~~~~iLfvc~~N~cRS~mAEal~~~~~~~~~l~~~~~v~SAG~~~~~~~~~~~~~a~~~l~~~gi~~s~~ 72 (161) T 2cwd_A 1 MDRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHV 72 (161) T ss_dssp -CCCEEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCCCC T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC T ss_conf 999887999849848799999999999888568775246850320157888788999999998632345666 No 248 >>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* (A:1-178) Probab=23.56 E-value=46 Score=13.78 Aligned_cols=81 Identities=19% Similarity=0.083 Sum_probs=35.9 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCC-CCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC Q ss_conf 98665999976985018999999973999847999997688-88788899860895046301323322101243210001 Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNS-NAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLS 79 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~-da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~ 79 (205) |..||+.|.+ |+|.--.+|++...+. ..++..+..+.. ................ +...+.... ..+...+. T Consensus 1 m~~k~vlVTG-atG~iG~~l~~~L~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~----~~~~~~~~ 72 (178) T 2z1m_A 1 MSGKRALITG-IRGQDGAYLAKLLLEK--GYEVYGADRRSGEFASWRLKELGIENDVK-IIHMDLLEF----SNIIRTIE 72 (178) T ss_dssp --CCEEEEET-TTSHHHHHHHHHHHHT--TCEEEEECSCCSTTTTHHHHHTTCTTTEE-ECCCCTTCH----HHHHHHHH T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCHHHHHHHCCCCCCE-EEEEECCCH----HHHHHHHH T ss_conf 9809899978-8868999999999978--39899997999764356688743158977-999136785----76123340 Q ss_pred CCCCEEEEEE Q ss_conf 2343036431 Q gi|254780570|r 80 SIQPDLICLA 89 (205) Q Consensus 80 ~~~~Dliv~~ 89 (205) ..++|.++.. T Consensus 73 ~~~~~~~~~~ 82 (178) T 2z1m_A 73 KVQPDEVYNL 82 (178) T ss_dssp HHCCSEEEEC T ss_pred CCCCCEEEEC T ss_conf 3698377522 No 249 >>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A (A:490-616,A:753-789) Probab=23.56 E-value=44 Score=13.90 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=12.1 Q ss_pred CCEEEEEECCCCHH Q ss_conf 66599997698501 Q gi|254780570|r 3 RKNIVIFISGEGTN 16 (205) Q Consensus 3 k~riavl~SG~Gsn 16 (205) ++|+++++||.|+. T Consensus 2 ~pkiafvFpGQGsq 15 (164) T 3hhd_A 2 ERPLWFICSGMGTQ 15 (164) T ss_dssp CCCEEEEECCSSCC T ss_pred CCCEEEEECCCCCC T ss_conf 78538996577652 No 250 >>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 helix bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} (A:127-295) Probab=23.53 E-value=46 Score=13.77 Aligned_cols=76 Identities=9% Similarity=-0.048 Sum_probs=36.0 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .++|+++++.|+ -....+.+.... -..+++.|+ |+.....-+.+++++.+.-... ..+ ..+.+.+... T Consensus 2 ~~~ri~iIG~G~--~g~~~~~~l~~~-~~~~~v~v~-dr~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~ 69 (169) T 1x7d_A 2 NARKXALIGNGA--QSEFQALAFHKH-LGIEEIVAY-DTDPLATAKLIANLKEYSGLTI-RRA-------SSVAEAVKGV 69 (169) T ss_dssp TCCEEEEECCST--THHHHHHHHHHH-SCCCEEEEE-CSSHHHHHHHHHHHTTCTTCEE-EEC-------SSHHHHHTTC T ss_pred CCCEEEEECCCH--HHHHHHHHHHHH-HCEEEEEEE-ECCHHHHHHHHHHHHHHCCCCC-CCC-------CCHHHHHHCC T ss_conf 984489982656--569999998753-120367998-2582489999997432068763-127-------9999997148 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) +++++++. T Consensus 70 di~~v~~~ 77 (169) T 1x7d_A 70 DIITTVTA 77 (169) T ss_dssp SEEEECCC T ss_pred CEEEEECC T ss_conf 71364026 No 251 >>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} (A:) Probab=23.42 E-value=26 Score=15.45 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=12.9 Q ss_pred EEECCCCCCCCCCCCCC Q ss_conf 23135322333244421 Q gi|254780570|r 107 ILNIHPSLLPLFPGLHT 123 (205) Q Consensus 107 ~iN~HpslLP~yrG~~~ 123 (205) +=|+||+|||+-.+..+ T Consensus 109 lP~i~~~ll~kk~~~~~ 125 (129) T 1tzy_A 109 LPNIQAVLLPKKTDSHK 125 (129) T ss_dssp CCCCCGGGSCC------ T ss_pred CCCCCHHHCCCCCCCCC T ss_conf 66426765587667777 No 252 >>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* (C:) Probab=23.40 E-value=27 Score=15.37 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=11.5 Q ss_pred EEECCCCCCCCCCCC Q ss_conf 231353223332444 Q gi|254780570|r 107 ILNIHPSLLPLFPGL 121 (205) Q Consensus 107 ~iN~HpslLP~yrG~ 121 (205) +=++||+|||+.+.. T Consensus 107 lP~i~~~ll~kk~~~ 121 (123) T 2nqb_C 107 LPNIQAVLLPKKTEK 121 (123) T ss_dssp CCCCCGGGSSCC--- T ss_pred CCCCCHHHCCCCCCC T ss_conf 675057556886556 No 253 >>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* (A:1-207) Probab=23.25 E-value=46 Score=13.74 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=30.4 Q ss_pred CCEEEEEECCC-CHH-HHHHHHHHHCCCCCCEEEEEEECC--------------CCCHHHHHHHHCCCCEEEEECC Q ss_conf 66599997698-501-899999997399984799999768--------------8887888998608950463013 Q gi|254780570|r 3 RKNIVIFISGE-GTN-MLSLIQATKKNDYPAEIVGVFSDN--------------SNAQGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~-Gsn-l~~Il~~~~~~~~~~eI~~Visn~--------------~da~~l~~a~~~~Ip~~~i~~~ 62 (205) +.|++|.+||+ .|. +..++. +. ..++..+.-+. .....-+.|+.+|||++.++.. T Consensus 17 ~~kvvv~~SGG~DS~~ll~l~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~ 87 (207) T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQ--QQ---GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFA 87 (207) T ss_dssp CCEEEEECCSCSTTHHHHHHHH--TT---CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECH T ss_pred CCEEEEECCCCHHHHHHHHHHH--HC---CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHH T ss_conf 8889999878699999999998--76---99599999988668887777886789999999999849977997879 No 254 >>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} (A:367-566) Probab=23.23 E-value=46 Score=13.73 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=13.9 Q ss_pred EEEEEECCCCH---HHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 59999769850---18999999973999847999997688 Q gi|254780570|r 5 NIVIFISGEGT---NMLSLIQATKKNDYPAEIVGVFSDNS 41 (205) Q Consensus 5 riavl~SG~Gs---nl~~Il~~~~~~~~~~eI~~Visn~~ 41 (205) |-++.+.|-|+ ++..+.-+.+. +..+..|+.||. T Consensus 73 ~~vi~i~GDGaf~~~~~el~~~~~~---~~~~~ivv~nN~ 109 (200) T 1ozh_A 73 RKVVSVSGDGGFLQSSMELETAVRL---KANVLHLIWVDN 109 (200) T ss_dssp SEEEEEEEHHHHHHHTTHHHHHHHH---TCCEEEEEEECS T ss_pred CEEEEEECCHHHHCCHHHHHHHHHH---CCCCEEEEEECC T ss_conf 7257997666764579999999982---999879999899 No 255 >>3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} (G:) Probab=23.19 E-value=46 Score=13.73 Aligned_cols=99 Identities=8% Similarity=-0.017 Sum_probs=48.3 Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEC---CCCC--HHHHHHHHCCCCEEEEECCCCCCCCCH------------------HH Q ss_conf 189999999739998479999976---8888--788899860895046301323322101------------------24 Q gi|254780570|r 16 NMLSLIQATKKNDYPAEIVGVFSD---NSNA--QGLVKARKEKVPTFPIPYKDYISRREH------------------EK 72 (205) Q Consensus 16 nl~~Il~~~~~~~~~~eI~~Visn---~~da--~~l~~a~~~~Ip~~~i~~~~~~~~~~~------------------~~ 72 (205) .++.+.+...+-+- ...++-. +.++ ...+.|++.|+|+..-...+-.-.+.. .. T Consensus 23 ~i~~~~~~L~~Akr---Pvii~G~~~~~~~~~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~g~~~g~~g~~G~~~~~ 99 (170) T 3cf4_G 23 SPEMAAKIISKAKR---PLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKW 99 (170) T ss_dssp CHHHHHHHHHHCSS---EEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTC T ss_pred CHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCCCCHHCCCCCCCCCCCCCHHHH T ss_conf 99999999996699---889968886432689999999998497889872226767766821116452224652210278 Q ss_pred HHHHHCCCCCCEEEEEEEEEE--ECC--CHHHHCCCCCEEECCCCCCCCCC Q ss_conf 321000123430364311222--057--21321066542313532233324 Q gi|254780570|r 73 AILMQLSSIQPDLICLAGYMR--LLS--RDFVESYKNKILNIHPSLLPLFP 119 (205) Q Consensus 73 ~l~~~l~~~~~Dliv~~g~~~--il~--~~~l~~~~~~~iN~HpslLP~yr 119 (205) ...+.+ .+.|++++.|... ..+ ..+...-+...|+++|.+--.|+ T Consensus 100 ~~~~~~--~~aDlii~iG~~~~~~~t~~~~~~~~~~~i~Id~d~~~~~~~~ 148 (170) T 3cf4_G 100 PGLDGN--GNYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIERGYIQNAT 148 (170) T ss_dssp CCSSSS--CCCSEEEEESCCHHHHHHHHHHHHHHCCCCEEECSSSCCTTSS T ss_pred HHHHHH--CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCC T ss_conf 888533--4678899957700421412023346677079982801314765 No 256 >>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:1-155) Probab=23.15 E-value=46 Score=13.72 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=18.3 Q ss_pred CCEEEEEEECCCCC----HHHHHHHHCCCCEEEEECC Q ss_conf 84799999768888----7888998608950463013 Q gi|254780570|r 30 PAEIVGVFSDNSNA----QGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 30 ~~eI~~Visn~~da----~~l~~a~~~~Ip~~~i~~~ 62 (205) +-+++.++|..... ..++.|++.|+++..+-.. T Consensus 74 ~~dlvi~iS~sG~t~~~~~~~~~a~~~g~~~I~iT~~ 110 (155) T 3eua_A 74 EKSLVILCSHSGNTPETVKAAAFARGKGALTIAXTFK 110 (155) T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCC T ss_conf 9968999808999867999998655302213321276 No 257 >>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} (A:128-271) Probab=23.15 E-value=46 Score=13.72 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=48.3 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 86659999769850189999999739998479999976888878889986089504630132332210124321000123 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) -.+|++|. |.|..-..+.+..+.. .++| +++|+. ....+.++..+..... .. .+.+.+. T Consensus 29 ~~~~v~ii--G~G~iG~~~a~~l~~~--g~~V--~~~~~~-~~~~~~~~~~~~~~~~--~~----------~~~e~~~-- 87 (144) T 2rir_A 29 HGSQVAVL--GLGRTGXTIARTFAAL--GANV--KVGARS-SAHLARITEXGLVPFH--TD----------ELKEHVK-- 87 (144) T ss_dssp TTSEEEEE--CCSHHHHHHHHHHHHT--TCEE--EEEESS-HHHHHHHHHTTCEEEE--GG----------GHHHHST-- T ss_pred CCCEEEEE--CCCHHHHHHHHHHHHC--CCEE--EEECCC-HHHHHHHHHHHCCEEE--EC----------CHHHHCC-- T ss_conf 78889998--9708999999998744--8558--984387-5566678875054365--20----------2012036-- Q ss_pred CCEEEEEEEEEEECCCHHHHCCCCC--EEEC Q ss_conf 4303643112220572132106654--2313 Q gi|254780570|r 82 QPDLICLAGYMRLLSRDFVESYKNK--ILNI 110 (205) Q Consensus 82 ~~Dliv~~g~~~il~~~~l~~~~~~--~iN~ 110 (205) +.|+|+++-=..++.++.++..+.+ ++|+ T Consensus 88 ~aDvVi~~~p~~~i~~~~~~~~k~g~iiid~ 118 (144) T 2rir_A 88 DIDICINTIPSXILNQTVLSSXTPKTLILDL 118 (144) T ss_dssp TCSEEEECCSSCCBCHHHHTTSCTTCEEEEC T ss_pred CCEEEECCCCCCCCCHHHHHCCCCCCEEEEE T ss_conf 7517971355543345677536999689992 No 258 >>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} (A:1-158,A:187-259) Probab=23.14 E-value=46 Score=13.72 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.4 Q ss_pred CCCEEEEEECCCCHHHHH Q ss_conf 866599997698501899 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLS 19 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~ 19 (205) |+++.+||+.|.||-|.. T Consensus 1 M~mkAVILAaG~GtRl~p 18 (231) T 1tzf_A 1 MASKAVILAGGLGTRLSE 18 (231) T ss_dssp CCCEEEEEECSCC----- T ss_pred CCCCEEEECCCCCCCCCH T ss_conf 985089988877546783 No 259 >>3hba_A Putative phosphosugar isomerase; YP_563707.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217} (A:42-147) Probab=23.06 E-value=47 Score=13.71 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=21.1 Q ss_pred CCEEEEEEECCCCC----HHHHHHHHCCCCEEEEECC Q ss_conf 84799999768888----7888998608950463013 Q gi|254780570|r 30 PAEIVGVFSDNSNA----QGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 30 ~~eI~~Visn~~da----~~l~~a~~~~Ip~~~i~~~ 62 (205) +.+++.++|..... ..++.|++.|.++..+-.. T Consensus 49 ~~d~vi~iS~sg~t~~~~~~~~~ak~~ga~ii~iT~~ 85 (106) T 3hba_A 49 AGGLVIVISQSGRSPDILAQARXAKNAGAFCVALVND 85 (106) T ss_dssp TTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 8828999833778767999999898669737876304 No 260 >>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} (A:) Probab=22.97 E-value=47 Score=13.70 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=31.7 Q ss_pred CCCCEEEEEECCCCHHH-HHHHHHHHCCCCCCEEEEEEECCCCCHHHHHH----HHCCCCEEEEECCCCCCCCCHHHHHH Q ss_conf 98665999976985018-99999997399984799999768888788899----86089504630132332210124321 Q gi|254780570|r 1 MIRKNIVIFISGEGTNM-LSLIQATKKNDYPAEIVGVFSDNSNAQGLVKA----RKEKVPTFPIPYKDYISRREHEKAIL 75 (205) Q Consensus 1 M~k~riavl~SG~Gsnl-~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a----~~~~Ip~~~i~~~~~~~~~~~~~~l~ 75 (205) |+| ++|+.|.++.+ +++.+++... .++|+++- +......+.+ ++.+.....+ ..|..+.++.++.+. T Consensus 1 MnK---~vlITGas~GIG~aiA~~la~~--G~~Vvi~~--r~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~~~~~~~ 72 (250) T 2cfc_A 1 MSR---VAIVTGASSGNGLAIATRFLAR--GDRVAALD--LSAETLEETARTHWHAYADKVLRV-RADVADEGDVNAAIA 72 (250) T ss_dssp CCC---EEEEETTTSHHHHHHHHHHHHT--TCEEEEEE--SCHHHHHHHHHHHSTTTGGGEEEE-ECCTTCHHHHHHHHH T ss_pred CCC---EEEECCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHH T ss_conf 998---9999288978999999999987--99899998--988999999999998649948999-812799999999999 Q ss_pred HHCCCC-CCEEEEE Q ss_conf 000123-4303643 Q gi|254780570|r 76 MQLSSI-QPDLICL 88 (205) Q Consensus 76 ~~l~~~-~~Dliv~ 88 (205) +..+++ .+|++|. T Consensus 73 ~~~~~~g~id~lv~ 86 (250) T 2cfc_A 73 ATMEQFGAIDVLVN 86 (250) T ss_dssp HHHHHHSCCCEEEE T ss_pred HHHHHHCCCCEEEE T ss_conf 99998099879997 No 261 >>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:1-117,A:236-266) Probab=22.83 E-value=47 Score=13.68 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=32.1 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHC----CCC-CCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH Q ss_conf 665999976985018999999973----999-847999997688887888998608950463013233221012432100 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKK----NDY-PAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQ 77 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~----~~~-~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~ 77 (205) +.||+++-++.-..+....+.+++ ..+ ..++...+.|- ......-.++.+. T Consensus 2 ~~rIgilq~~~~~~l~~~~~gf~~~L~~~G~~e~ni~i~~~~A------------------------~~D~~~l~~ia~~ 57 (148) T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFXNS------------------------EGDQSKVATXSKQ 57 (148) T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEC------------------------TTCHHHHHHHHHH T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC------------------------CCCHHHHHHHHHH T ss_conf 9769999787773899999999999997599876079999679------------------------8899999999999 Q ss_pred CCCCCCEEEEEEEE Q ss_conf 01234303643112 Q gi|254780570|r 78 LSSIQPDLICLAGY 91 (205) Q Consensus 78 l~~~~~Dliv~~g~ 91 (205) +...+||+|+..|- T Consensus 58 l~~~~~DlIva~gT 71 (148) T 3lft_A 58 LVANGNDLVVGIAT 71 (148) T ss_dssp HTTSSCSEEEEESH T ss_pred HHHCCCCEEEECCC T ss_conf 97469867984484 No 262 >>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, malate dehydrogenase; HET: NAI; 2.00A {Ascaris suum} (A:13-33,A:296-574) Probab=22.83 E-value=22 Score=15.92 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=18.3 Q ss_pred HHHHHCCCCCCEE-EEEEEEEEECCCHHHHCC Q ss_conf 3210001234303-643112220572132106 Q gi|254780570|r 73 AILMQLSSIQPDL-ICLAGYMRLLSRDFVESY 103 (205) Q Consensus 73 ~l~~~l~~~~~Dl-iv~~g~~~il~~~~l~~~ 103 (205) .+.+.++..+||. +-+.+....+++++++.. T Consensus 115 ~L~e~i~~~kp~vLiG~S~~~g~ft~evi~~M 146 (300) T 1o0s_A 115 SILEVIRAARPGALIGASTVRGAFNEEVIRAM 146 (300) T ss_dssp CHHHHHHHHCCSEEEECSSCTTCSCHHHHHHH T ss_pred CHHHHHHCCCCCEEEECCCCCCCCCHHHHHHH T ss_conf 67888623577607824545676777999999 No 263 >>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease, coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3ikz_A* (A:1-127) Probab=22.68 E-value=30 Score=15.03 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=17.8 Q ss_pred CCCEEEEEECCC-----CHHHHHHHHHHHCCCCCCEEEEEEE-CCC Q ss_conf 866599997698-----5018999999973999847999997-688 Q gi|254780570|r 2 IRKNIVIFISGE-----GTNMLSLIQATKKNDYPAEIVGVFS-DNS 41 (205) Q Consensus 2 ~k~riavl~SG~-----Gsnl~~Il~~~~~~~~~~eI~~Vis-n~~ 41 (205) .|+|+++++... |+ +.-+-.+...+ .++..++| |++ T Consensus 3 ~k~~i~~~~GsFdP~H~GH-~~ll~~A~~~~---d~l~v~v~~~~~ 44 (127) T 3k9w_A 3 GSMVVAVYPGTFDPLTRGH-EDLVRRASSIF---DTLVVGVADSRA 44 (127) T ss_dssp CCCCEEEEEECCTTCCHHH-HHHHHHHHHHS---SEEEEEEECCGG T ss_pred CCCEEEEECCCCCCCCHHH-HHHHHHHHHHC---CCCEECCCCCCC T ss_conf 8728999585778888999-99999999868---931141445411 No 264 >>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:1-109,A:247-284) Probab=22.57 E-value=48 Score=13.65 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=28.7 Q ss_pred HHHHHH-HHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 788899-8608950463013233221012432100012343036431122 Q gi|254780570|r 44 QGLVKA-RKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYM 92 (205) Q Consensus 44 ~~l~~a-~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv~~g~~ 92 (205) .+++++ +++++.+..+.... ..+++..+ +.+.+.++|||++.||. T Consensus 27 ~G~~~~~~~~gi~~~~~e~~~---~~~~~~~~-~~~a~~g~dlIi~~g~~ 72 (147) T 2fqx_A 27 EGISRFAQENNAKCKYVTAST---DAEYVPSL-SAFADENMGLVVACGSF 72 (147) T ss_dssp HHHHHHHHHTTCEEEEEECCS---GGGHHHHH-HHHHHTTCSEEEEESTT T ss_pred HHHHHHHHHHCCEEEEEECCC---HHHHHHHH-HHHHHCCCCEEEECCCC T ss_conf 999999998598599994599---89999999-99997799989991754 No 265 >>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} (A:) Probab=22.45 E-value=48 Score=13.63 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=46.4 Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEE--EECCCCC----------------------H----------- Q ss_conf 98665999976985018999999973-9998479999--9768888----------------------7----------- Q gi|254780570|r 1 MIRKNIVIFISGEGTNMLSLIQATKK-NDYPAEIVGV--FSDNSNA----------------------Q----------- 44 (205) Q Consensus 1 M~k~riavl~SG~Gsnl~~Il~~~~~-~~~~~eI~~V--isn~~da----------------------~----------- 44 (205) |+.+||.|-++++..+-.++-.+... ...+.++.++ +...+.. . T Consensus 3 ~~~~~ILv~vD~s~~s~~al~~a~~~a~~~~~~i~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (162) T 1mjh_A 3 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK 82 (162) T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 32094999988998999999999999875399699999970355554433222235333320077889999999999999 Q ss_pred -HH----HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEE Q ss_conf -88----89986089504630132332210124321000123430364311 Q gi|254780570|r 45 -GL----VKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAG 90 (205) Q Consensus 45 -~l----~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dliv~~g 90 (205) .+ +.+...++++... .......+.|.+..++.++|++|+.. T Consensus 83 ~~l~~~~~~~~~~~~~~~~~-----~~~g~~~~~I~~~a~~~~~dliVlG~ 128 (162) T 1mjh_A 83 NKMENIKKELEDVGFKVKDI-----IVVGIPHEEIVKIAEDEGVDIIIMGS 128 (162) T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEEECHHHHHHHHHHHTTCSEEEEES T ss_pred HHHHHHHHHHHHCCCEEEEE-----EEECCHHHHHHHHHHCCCCCEEEEEC T ss_conf 99999999887659769999-----99466899998886315678799806 No 266 >>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5; 2.73A {Saccharopolyspora erythraea} (A:550-674,A:746-852) Probab=22.34 E-value=48 Score=13.65 Aligned_cols=19 Identities=21% Similarity=0.079 Sum_probs=14.3 Q ss_pred EEECCCCCCHHHHHHHHHH Q ss_conf 9871899899999999999 Q gi|254780570|r 156 AVPVSSQDTESSLSQKVLS 174 (205) Q Consensus 156 ~~~i~~~d~~~~l~~rv~~ 174 (205) .++|.|+.+...+.+++.. T Consensus 196 fiEiGP~~~L~~~~~~~l~ 214 (232) T 2hg4_A 196 FVEVSPHPVLTVGIEATLD 214 (232) T ss_dssp EEECSSSCSSHHHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHH T ss_conf 9994968899999999987 No 267 >>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:23-266) Probab=22.32 E-value=42 Score=14.02 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=31.3 Q ss_pred CCEEEEEECCCCHHH--HHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEC--CCCCCCCCHHHHHHHHC Q ss_conf 665999976985018--99999997399984799999768888788899860895046301--32332210124321000 Q gi|254780570|r 3 RKNIVIFISGEGTNM--LSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY--KDYISRREHEKAILMQL 78 (205) Q Consensus 3 k~riavl~SG~Gsnl--~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~--~~~~~~~~~~~~l~~~l 78 (205) ..|+.|++-|..... +++.+. ++..--.|++...... ...++.++.=.+ -+..+ -..-+++++.+ T Consensus 26 ~~~i~vvg~GKAa~~MA~a~~~~-----lg~~~Givv~~~g~~~-----~~~~i~v~ea~HP~Pd~~s-~~Aa~~il~~~ 94 (244) T 1x3l_A 26 KGKVYVIALGKAACEMARAIEDI-----LDVEDGVAVTKYGYGK-----ELKRIKVIEAGHPIPDEKS-ILGAKEALSIL 94 (244) T ss_dssp CSCEEEEEESTTHHHHHHHHHHH-----SCCSEEEEEEETTCCC-----CCSSSEEEEECSSSCCHHH-HHHHHHHHHHH T ss_pred CCCEEEEEECHHHHHHHHHHHHH-----CCCCCCEEEECCCCCC-----CCCCEEEEECCCCCCCHHH-HHHHHHHHHHH T ss_conf 89889999868999999999997-----1999868995886677-----7877179977899898778-99999999999 Q ss_pred CCCCCE Q ss_conf 123430 Q gi|254780570|r 79 SSIQPD 84 (205) Q Consensus 79 ~~~~~D 84 (205) ++..+| T Consensus 95 ~~~~~~ 100 (244) T 1x3l_A 95 NRAREN 100 (244) T ss_dssp HHCCTT T ss_pred HHCCCC T ss_conf 708987 No 268 >>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate guanyltransferase, structural genomics; 2.20A {Thermus thermophilus HB8} (A:1-263) Probab=22.20 E-value=31 Score=14.93 Aligned_cols=19 Identities=16% Similarity=0.518 Sum_probs=15.8 Q ss_pred CCCEEEEEECCCCHHHHHH Q ss_conf 8665999976985018999 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLSL 20 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~I 20 (205) |+++.+||+.|.||-|..+ T Consensus 1 M~mkavILAaG~GtRl~pl 19 (263) T 2cu2_A 1 MKTYALVMAGGRGERLWPL 19 (263) T ss_dssp CCEEEEEECCCCCGGGTTT T ss_pred CCCEEEEECCCCCCCCCCC T ss_conf 9812899679730437875 No 269 >>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative; 2.19A {Bacteroides fragilis nctc 9343} (A:1-167) Probab=22.13 E-value=49 Score=13.59 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=25.7 Q ss_pred CCCCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEE Q ss_conf 9866599997698-50189999999739998479999976888878889986089504 Q gi|254780570|r 1 MIRKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTF 57 (205) Q Consensus 1 M~k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~ 57 (205) |.++||+|+..|+ |+.+ ...+... .+++..+ .++.....-..++..+.... T Consensus 8 ~~~~~I~IiG~G~~G~~l---a~~l~~~--g~~v~~~-~~~~~~~~~~~~~~~~~~~~ 59 (167) T 3d1l_A 8 IEDTPIVLIGAGNLATNL---AKALYRK--GFRIVQV-YSRTEESARELAQKVEAEYT 59 (167) T ss_dssp GGGCCEEEECCSHHHHHH---HHHHHHH--TCCEEEE-ECSSHHHHHHHHHHTTCEEE T ss_pred CCCCEEEEECCHHHHHHH---HHHHHHC--CCCEEEE-ECCCHHHHHHHHHHCCCEEE T ss_conf 469989998311999999---9999988--9977999-78999999999986698563 No 270 >>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} (A:1-127) Probab=22.10 E-value=15 Score=17.14 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=13.2 Q ss_pred CHHHHHHHHCCCCCCEEEEE Q ss_conf 01243210001234303643 Q gi|254780570|r 69 EHEKAILMQLSSIQPDLICL 88 (205) Q Consensus 69 ~~~~~l~~~l~~~~~Dliv~ 88 (205) .++....+.+++++||+++. T Consensus 78 ~~~~~~~~~~~~~~~d~~i~ 97 (127) T 3elb_A 78 APYVTTLETLDKYNCDFCVH 97 (127) T ss_dssp CCSSCCHHHHHHTTCSEEEE T ss_pred CCCCCHHHHHHHHCCCEEEE T ss_conf 88646799999847968996 No 271 >>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} (A:1-193) Probab=21.99 E-value=49 Score=13.57 Aligned_cols=79 Identities=8% Similarity=-0.028 Sum_probs=42.8 Q ss_pred CCC--HHHHHHHHHHHCCCCCCEEEEEEECCCC---CH----HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCC Q ss_conf 985--0189999999739998479999976888---87----88899860895046301323322101243210001234 Q gi|254780570|r 12 GEG--TNMLSLIQATKKNDYPAEIVGVFSDNSN---AQ----GLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQ 82 (205) Q Consensus 12 G~G--snl~~Il~~~~~~~~~~eI~~Visn~~d---a~----~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~ 82 (205) |.| ..+..+++.. +..=++++|+..- ++ ..+..++.++.+..++.-......+.=.++.+..++.+ T Consensus 27 g~g~~~~l~~~l~~~-----g~~~vlivtd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 101 (193) T 1vlj_A 27 GRGTIPKIGEEIKNA-----GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEK 101 (193) T ss_dssp STTCGGGHHHHHHHT-----TCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHC-----CCCEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC T ss_conf 369999999999966-----998589998875788762999999999865991999867169999999999999861358 Q ss_pred CEEEEEEEEEEEC Q ss_conf 3036431122205 Q gi|254780570|r 83 PDLICLAGYMRLL 95 (205) Q Consensus 83 ~Dliv~~g~~~il 95 (205) +|.|+-.|=+..+ T Consensus 102 ~D~IIaiGGGs~~ 114 (193) T 1vlj_A 102 VEAVLGVGGGSVV 114 (193) T ss_dssp CSEEEEEESHHHH T ss_pred CCEEEECCCCCHH T ss_conf 8757523886311 No 272 >>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:35-261) Probab=21.98 E-value=43 Score=13.94 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=31.9 Q ss_pred CCEEEEEECCCCHH--HHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEC--CCCCCCCCHHHHHHHHC Q ss_conf 66599997698501--899999997399984799999768888788899860895046301--32332210124321000 Q gi|254780570|r 3 RKNIVIFISGEGTN--MLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY--KDYISRREHEKAILMQL 78 (205) Q Consensus 3 k~riavl~SG~Gsn--l~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~--~~~~~~~~~~~~l~~~l 78 (205) ..|+.|++-|..+. ++++.+.+... ..--.|++....... ...++.++.=.+ -+..+ -...+++++.+ T Consensus 15 ~~~v~vva~GKAa~~MA~a~~~~lg~~---~~~G~vv~~~g~~~~----~~~~i~v~~a~HP~Pd~~s-~~Aa~~il~~~ 86 (227) T 2b8n_A 15 LDRVILVAVGKAAWRXAKAAYEVLGKK---IRKGVVVTKYGHSEG----PIDDFEIYEAGHPVPDENT-IKTTRRVLELV 86 (227) T ss_dssp CCSEEEEEESTTHHHHHHHHHHHHGGG---EEEEEEEEETTCCCS----CCTTCEEEEECSSSCCHHH-HHHHHHHHHHH T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCC----CCCCEEEEECCCCCCCHHH-HHHHHHHHHHH T ss_conf 998899998389999999999972767---770699958986778----8887389978899998789-99999999999 Q ss_pred CCCCCE Q ss_conf 123430 Q gi|254780570|r 79 SSIQPD 84 (205) Q Consensus 79 ~~~~~D 84 (205) ++..+| T Consensus 87 ~~~~~~ 92 (227) T 2b8n_A 87 DQLNEN 92 (227) T ss_dssp SSCCTT T ss_pred HCCCCC T ss_conf 618998 No 273 >>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* (A:488-615,A:751-788) Probab=21.88 E-value=49 Score=13.56 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.4 Q ss_pred CCCEEEEEECCCCHH Q ss_conf 866599997698501 Q gi|254780570|r 2 IRKNIVIFISGEGTN 16 (205) Q Consensus 2 ~k~riavl~SG~Gsn 16 (205) .++|++++++|.|+- T Consensus 1 s~~kia~lFpGQGsq 15 (166) T 2vz8_A 1 SKRPVWFICSGMGAQ 15 (166) T ss_dssp SCCCEEEEECCSSCC T ss_pred CCCCEEEEECCCCCC T ss_conf 899879982898731 No 274 >>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} (A:1-146,A:319-398) Probab=21.78 E-value=49 Score=13.54 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=40.7 Q ss_pred CCC-CEEEEEECCCCH--HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH-HH Q ss_conf 986-659999769850--18999999973999847999997688887888998608950463013233221012432-10 Q gi|254780570|r 1 MIR-KNIVIFISGEGT--NMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAI-LM 76 (205) Q Consensus 1 M~k-~riavl~SG~Gs--nl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l-~~ 76 (205) |.+ .|+++...|..+ .....+.+..... ..+|+.|++.++ ......++++++|.... +.+ +.... .+ T Consensus 9 ~~~~lrvgiIG~G~~g~~~~~~~~~a~~~~~-~~~Vvgv~d~~~-~~~~~~a~~~~~~~~r~----y~d---~~~~~~~e 79 (226) T 3dty_A 9 IPQPIRWAXVGGGSQSQIGYIHRCAALRDNT-FVLVAGAFDIDP-IRGSAFGEQLGVDSERC----YAD---YLSXFEQE 79 (226) T ss_dssp SCSCEEEEEEECCTTCSSHHHHHHHHHGGGS-EEEEEEECCSSH-HHHHHHHHHTTCCGGGB----CSS---HHHHHHHH T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCCC-CEEEEEEECCCH-HHHHHHHHHHCCCCCEE----CCC---HHHHHHHH T ss_conf 8997089999368647645999999614699-769999968999-99999999868894301----389---99999988 Q ss_pred HCCCCCCEEEEEE Q ss_conf 0012343036431 Q gi|254780570|r 77 QLSSIQPDLICLA 89 (205) Q Consensus 77 ~l~~~~~Dliv~~ 89 (205) .+..-++|+|+.+ T Consensus 80 l~~~~~iD~V~I~ 92 (226) T 3dty_A 80 ARRADGIQAVSIA 92 (226) T ss_dssp TTCTTCCSEEEEE T ss_pred HHCCCCCEEEEEC T ss_conf 6368984089976 No 275 >>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} (A:) Probab=21.29 E-value=35 Score=14.60 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=14.8 Q ss_pred CCCEEEEEECCCCHHHHH Q ss_conf 866599997698501899 Q gi|254780570|r 2 IRKNIVIFISGEGTNMLS 19 (205) Q Consensus 2 ~k~riavl~SG~Gsnl~~ 19 (205) |+++.+||+.|.||-|.. T Consensus 1 M~m~aIILAaG~GsRl~p 18 (293) T 1fxo_A 1 MKRKGIILAGGSGTRLHP 18 (293) T ss_dssp -CEEEEEECCCCCTTTTT T ss_pred CCCEEEEECCCCCCCCCC T ss_conf 981399988867777883 No 276 >>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} (A:1-248,A:453-480) Probab=21.28 E-value=50 Score=13.47 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=9.3 Q ss_pred EEEEECCCCCHHHHHHHHCCCCEEE Q ss_conf 9999768888788899860895046 Q gi|254780570|r 34 VGVFSDNSNAQGLVKARKEKVPTFP 58 (205) Q Consensus 34 ~~Visn~~da~~l~~a~~~~Ip~~~ 58 (205) ++||+|---....+.|++.|||.++ T Consensus 112 ~cIV~D~f~~wa~~vA~~lGIP~~~ 136 (276) T 2vch_A 112 TALVVDLFGTDAFDVAVEFHVPPYI 136 (276) T ss_dssp SEEEECTTCGGGHHHHHHTTCCEEE T ss_pred CEEEECCCCHHHHHHHHHHCCCCEE T ss_conf 5366435246899999984877134 No 277 >>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, alternative splicing, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* (A:159-289) Probab=21.16 E-value=51 Score=13.46 Aligned_cols=78 Identities=19% Similarity=0.034 Sum_probs=38.0 Q ss_pred EEEC-CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEE Q ss_conf 9976-985018999999973999847999997688887888998608950463013233221012432100012343036 Q gi|254780570|r 8 IFIS-GEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLI 86 (205) Q Consensus 8 vl~S-G~Gsnl~~Il~~~~~~~~~~eI~~Visn~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~~~Dli 86 (205) |++. |.|.--...+...+. ..+++..+.++. .-++++++.+-... +++.+. +..+++.+......+|.+ T Consensus 8 Vli~gg~g~vG~~~iqla~~--~g~~vi~~~~~~---~~~~~~~~~ga~~~-i~~~~~----~~~~~~~~~~~~~~~d~v 77 (131) T 2j8z_A 8 VLIHAGLSGVGTAAIQLTRM--AGAIPLVTAGSQ---KKLQMAEKLGAAAG-FNYKKE----DFSEATLKFTKGAGVNLI 77 (131) T ss_dssp EEESSTTSHHHHHHHHHHHH--TTCEEEEEESCH---HHHHHHHHHTCSEE-EETTTS----CHHHHHHHHTTTSCEEEE T ss_pred EEEEECCCCHHEEEEECCCC--CCCCCEEEEECH---HHHHHHHHHCCCEE-ECCCCC----CHHHHHHHHHCCCCCEEE T ss_conf 99962897531002341123--244426998104---54445665133113-202452----168999998579983799 Q ss_pred EEEEEEEEC Q ss_conf 431122205 Q gi|254780570|r 87 CLAGYMRLL 95 (205) Q Consensus 87 v~~g~~~il 95 (205) +.++-...+ T Consensus 78 ~~~~g~~~~ 86 (131) T 2j8z_A 78 LDCIGGSYW 86 (131) T ss_dssp EESSCGGGH T ss_pred EECCCHHHH T ss_conf 977756899 No 278 >>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A (A:) Probab=21.02 E-value=51 Score=13.44 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=20.3 Q ss_pred CCC-CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 986-6599997698501899999997399984799999768 Q gi|254780570|r 1 MIR-KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDN 40 (205) Q Consensus 1 M~k-~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn~ 40 (205) |+| .||+|. |.|+--.+++.....+.. .+++++=.|. T Consensus 1 m~~~~KI~Ii--GaG~vg~~l~~~l~~~~i-~el~L~D~~~ 38 (317) T 2ewd_A 1 MIERRKIAVI--GSGQIGGNIAYIVGKDNL-ADVVLFDIAE 38 (317) T ss_dssp CCCCCEEEEE--CCSHHHHHHHHHHHHHTC-CEEEEECSSS T ss_pred CCCCCEEEEE--CCCHHHHHHHHHHHHCCC-CEEEEECCCC T ss_conf 9999979998--989899999999982899-8799985899 No 279 >>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase; acetyltransferase, bifunctional, crystallography, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} (A:1-232) Probab=20.84 E-value=49 Score=13.57 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=22.2 Q ss_pred CCCCEEEEEECCCCHHH-----------------HHHHHHHHCCCCCCEEEEEEE Q ss_conf 98665999976985018-----------------999999973999847999997 Q gi|254780570|r 1 MIRKNIVIFISGEGTNM-----------------LSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 1 M~k~riavl~SG~Gsnl-----------------~~Il~~~~~~~~~~eI~~Vis 38 (205) |.+.+.+||+.|.||=| +-.++...+... -+++.|.. T Consensus 9 ~~~~~aIIlAaG~GsRl~p~tPK~li~v~Gkpli~~~i~~l~~~~~-~~iiiv~~ 62 (232) T 1hm9_A 9 HHSNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQP-EKTVTVVG 62 (232) T ss_dssp --CEEEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTTCC-SEEEEEEC T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHCCC-CEEEEEEC T ss_conf 6788699989888887698998677489980099999999997799-87999959 No 280 >>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} (A:1-162) Probab=20.76 E-value=52 Score=13.40 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=31.9 Q ss_pred CCEEEEEECCC-CHHHH-HHHHHHHCCCCCCEEEEEEECCC-CC-----HHHHHHHHCCCCEEEEECC Q ss_conf 66599997698-50189-99999973999847999997688-88-----7888998608950463013 Q gi|254780570|r 3 RKNIVIFISGE-GTNML-SLIQATKKNDYPAEIVGVFSDNS-NA-----QGLVKARKEKVPTFPIPYK 62 (205) Q Consensus 3 k~riavl~SG~-Gsnl~-~Il~~~~~~~~~~eI~~Visn~~-da-----~~l~~a~~~~Ip~~~i~~~ 62 (205) .+|+++++||+ .|.+. .++.. ...++.++.-+.. .. ..-+.++.++++....... T Consensus 2 ~~kv~v~~SGG~DS~~~l~ll~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~~ 64 (162) T 2pg3_A 2 XKRAVVVFSGGQDSTTCLIQALQ-----DYDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDV 64 (162) T ss_dssp CCEEEEECCSSHHHHHHHHHHHH-----HCSEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEEC T ss_pred CCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 98699983782889999999998-----5996999999889861999999998887653011001147 No 281 >>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} (A:194-372) Probab=20.71 E-value=52 Score=13.40 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEE---CCCCC--HHHHHHHHCCCCEEEEECCCCCCCCCHH--HHHHHHCCCCCCEEEE Q ss_conf 018999999973999847999997---68888--7888998608950463013233221012--4321000123430364 Q gi|254780570|r 15 TNMLSLIQATKKNDYPAEIVGVFS---DNSNA--QGLVKARKEKVPTFPIPYKDYISRREHE--KAILMQLSSIQPDLIC 87 (205) Q Consensus 15 snl~~Il~~~~~~~~~~eI~~Vis---n~~da--~~l~~a~~~~Ip~~~i~~~~~~~~~~~~--~~l~~~l~~~~~Dliv 87 (205) ..++.+.+...+.+- ++.++- .+..+ ...++|++.|+|++.-...+..-.+.+. ....-.-.-.+.|+|+ T Consensus 8 ~~i~~~~~~L~~A~r---PvIi~G~~~~~~~a~~~l~~lae~~giPv~~~~~~kg~~p~~~p~~~g~~~~~~~~~aDlil 84 (179) T 2c31_A 8 DAIARAADLIKNAKR---PVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCV 84 (179) T ss_dssp HHHHHHHHHHHTCSS---EEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEE T ss_pred HHHHHHHHHHHHCCC---CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC T ss_conf 999999999861689---58999623113447899988787418651222012455664343221000132224551210 Q ss_pred EEEEE Q ss_conf 31122 Q gi|254780570|r 88 LAGYM 92 (205) Q Consensus 88 ~~g~~ 92 (205) +.|.. T Consensus 85 ~iG~~ 89 (179) T 2c31_A 85 LIGAR 89 (179) T ss_dssp EESCC T ss_pred CCCCC T ss_conf 23665 No 282 >>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:1-106,A:243-276) Probab=20.63 E-value=52 Score=13.38 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=10.6 Q ss_pred CCCCCCCCCCCCHHC Q ss_conf 333244421210000 Q gi|254780570|r 115 LPLFPGLHTHRRVLQ 129 (205) Q Consensus 115 LP~yrG~~~~~~ai~ 129 (205) =|.|.|.-+.++|+. T Consensus 106 D~~~~~~~~~~~~~~ 120 (140) T 3ksm_A 106 DPEYXGYLAVQRALD 120 (140) T ss_dssp CHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH T ss_conf 499999999999999 No 283 >>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:) Probab=20.52 E-value=52 Score=13.37 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=15.6 Q ss_pred EEEEEEECCCCC----HHHHHHHHCCCCEEEEEC Q ss_conf 799999768888----788899860895046301 Q gi|254780570|r 32 EIVGVFSDNSNA----QGLVKARKEKVPTFPIPY 61 (205) Q Consensus 32 eI~~Visn~~da----~~l~~a~~~~Ip~~~i~~ 61 (205) .++.++|..... ..++.|++.|+++..+.. T Consensus 81 ~~vI~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~ 114 (186) T 1m3s_A 81 DLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTI 114 (186) T ss_dssp CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEES T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 8899981899864678999999986996999989 No 284 >>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} (A:1-105) Probab=20.45 E-value=52 Score=13.36 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=36.9 Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEC-CCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCC Q ss_conf 6659999769850189999999739998479999976-888878889986089504630132332210124321000123 Q gi|254780570|r 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSD-NSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 (205) Q Consensus 3 k~riavl~SG~Gsnl~~Il~~~~~~~~~~eI~~Visn-~~da~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~l~~~l~~~ 81 (205) .||+.|+.- .+|.+-++-+...+. .++|. .+| +.+....++.++.|++++.-.. .+.+... T Consensus 4 ~k~v~viG~-G~sG~salA~~L~~~--G~~V~--~~D~~~~~~~~~~L~~~gi~~~~g~~-------------~~~~~~~ 65 (105) T 3eag_A 4 XKHIHIIGI-GGTFXGGLAAIAKEA--GFEVS--GCDAKXYPPXSTQLEALGIDVYEGFD-------------AAQLDEF 65 (105) T ss_dssp CCEEEEESC-CSHHHHHHHHHHHHT--TCEEE--EEESSCCTTHHHHHHHTTCEEEESCC-------------GGGGGSC T ss_pred CCEEEEEEE-CHHHHHHHHHHHHHC--CCEEE--EEECCCCCHHHHHHHHCCCEEECCCC-------------HHHCCCC T ss_conf 778999985-789999999999978--99399--99799995789999978899987889-------------7884665 Q ss_pred CCEEEEEE Q ss_conf 43036431 Q gi|254780570|r 82 QPDLICLA 89 (205) Q Consensus 82 ~~Dliv~~ 89 (205) ++|++|.. T Consensus 66 ~~d~vV~S 73 (105) T 3eag_A 66 KADVYVIG 73 (105) T ss_dssp CCSEEEEC T ss_pred CCCEEEEE T ss_conf 56422233 No 285 >>1di6_A MOGA, molybdenum cofactor biosythetic enzyme; MOCO, MOCO biosynthesis, gephyrin; 1.45A {Escherichia coli} (A:) Probab=20.31 E-value=53 Score=13.34 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=10.4 Q ss_pred CCCCEEEEEECCC Q ss_conf 9866599997698 Q gi|254780570|r 1 MIRKNIVIFISGE 13 (205) Q Consensus 1 M~k~riavl~SG~ 13 (205) |.+.|++|+..|. T Consensus 1 ~r~~rv~ii~tGd 13 (195) T 1di6_A 1 MATLRIGLVSISD 13 (195) T ss_dssp -CCEEEEEEEEEC T ss_pred CCCEEEEEEEECC T ss_conf 9831899999677 No 286 >>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, PSI; HET: MSE; 2.00A {Enterococcus faecalis V583} (A:1-182) Probab=20.18 E-value=53 Score=13.32 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=17.8 Q ss_pred CCCEEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 866599997698-5018999999973999847999997 Q gi|254780570|r 2 IRKNIVIFISGE-GTNMLSLIQATKKNDYPAEIVGVFS 38 (205) Q Consensus 2 ~k~riavl~SG~-Gsnl~~Il~~~~~~~~~~eI~~Vis 38 (205) .++||+|+.+|. |+-+-..+. +. ..+|.++.. T Consensus 2 ~~~kI~IiGaG~~G~~~A~~La---~~--G~~V~~~~~ 34 (182) T 2ew2_A 2 NAXKIAIAGAGAXGSRLGIXLH---QG--GNDVTLIDQ 34 (182) T ss_dssp --CEEEEECCSHHHHHHHHHHH---HT--TCEEEEECS T ss_pred CCCEEEEECCCHHHHHHHHHHH---HC--CCCEEEEEC T ss_conf 9888999991999999999999---68--996799978 Done!