RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >gnl|CDD|180182 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed. Length = 200 Score = 283 bits (726), Expect = 3e-77 Identities = 95/188 (50%), Positives = 129/188 (68%) Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63 K IV+ SG G+N+ ++I A PAEIV V SD +A GL +A +PTF + +KD Sbjct: 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKD 61 Query: 64 YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT 123 + SR + A++ L + QPDL+ LAG+MR+L FV +Y+ +I+NIHPSLLP FPGLHT Sbjct: 62 FPSREAFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLHT 121 Query: 124 HRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLA 183 H + L++G+K+ GCTVH V +D GPIIAQAAVPV + DTE SL+ +VL EH LYPL Sbjct: 122 HEQALEAGVKVHGCTVHFVDEGLDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLV 181 Query: 184 LKYTILGK 191 +K+ G+ Sbjct: 182 VKWFAEGR 189 >gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. Length = 190 Score = 218 bits (556), Expect = 1e-57 Identities = 84/182 (46%), Positives = 123/182 (67%) Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63 K IV+ ISG G+N+ ++I A K+ PA +V V S+ +A GL +A + +PTF + KD Sbjct: 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKD 60 Query: 64 YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT 123 + SR ++AI+ +L + + DL+ LAG+MR+L F+ + +ILNIHPSLLP FPGLH Sbjct: 61 FPSREAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHA 120 Query: 124 HRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLA 183 + L++G+K +GCTVH V +D GPIIAQA VP+ +DTE +L Q++ EH +YPLA Sbjct: 121 VEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLA 180 Query: 184 LK 185 + Sbjct: 181 IA 182 >gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase. Length = 207 Score = 135 bits (343), Expect = 5e-33 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64 + +F+SG G+N ++ A ++V V ++ G AR+ +P P Sbjct: 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYP---- 56 Query: 65 ISRREHE----KAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120 ++ E + ++ L D + LAGY++L+ + V +Y ILNIHP+LLP F G Sbjct: 57 KTKGEPDGLSPDELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGG 116 Query: 121 -----LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSA 175 + H+ V+ SG + +G TVH V + D G I+AQ VPV + DT L+ +VL Sbjct: 117 KGYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHE 176 Query: 176 EHLLYP 181 EH LY Sbjct: 177 EHQLYV 182 >gnl|CDD|161980 TIGR00655, PurU, formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. Length = 280 Score = 132 bits (334), Expect = 7e-32 Identities = 69/182 (37%), Positives = 96/182 (52%), Gaps = 3/182 (1%) Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63 K + I +S E + L+ + AEI V S++ + + LV + +P IP Sbjct: 85 KRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLV--ERFGIPFHYIP-AT 141 Query: 64 YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT 123 +R EHEK L L Q DL+ LA YM++LS DFV+ Y NKI+NIH S LP F G + Sbjct: 142 KDNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANP 201 Query: 124 HRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLA 183 ++R + G+KI G T H VT +DEGPII Q V V D L + E ++ A Sbjct: 202 YQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARA 261 Query: 184 LK 185 +K Sbjct: 262 VK 263 >gnl|CDD|180354 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed. Length = 286 Score = 119 bits (301), Expect = 5e-28 Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 15/168 (8%) Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY- 61 RK +VI +S E + L+ + + P EI V S++ + + LV+ F IP+ Sbjct: 89 RKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVER-------FGIPFH 141 Query: 62 -----KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLP 116 K+ ++ E E +L + QPDL+ LA YM++LS DFV + +I+NIH S LP Sbjct: 142 HVPVTKE--TKAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLP 199 Query: 117 LFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDT 164 F G + + + G+K+ G T H VTA++DEGPII Q + V +DT Sbjct: 200 AFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDT 247 >gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed. Length = 289 Score = 92.9 bits (231), Expect = 5e-20 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 15/178 (8%) Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY- 61 R +VI +S + L+ + + +IVG+ S++ + Q L A + +P +P Sbjct: 93 RPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPL--AVQHDIPFHHLPVT 150 Query: 62 KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGL 121 D ++ + E IL + + +L+ LA YM++LS D + +NIH S LP F G Sbjct: 151 PD--TKAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGA 208 Query: 122 HTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLL 179 + + G+K+ G T H VT ++DEGPII Q V S E L+ Sbjct: 209 RPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHSY----------SPEDLV 256 >gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase. Length = 268 Score = 89.0 bits (221), Expect = 7e-19 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 10/133 (7%) Query: 59 IPYKDYIS-----RREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPS 113 IPY Y+ +RE E L++ D + LA YM++LS +F++ Y I+NIH Sbjct: 124 IPYH-YLPTTKENKREDEILELVK----GTDFLVLARYMQILSGNFLKGYGKDIINIHHG 178 Query: 114 LLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVL 173 LLP F G + ++ +G+K+ G T H VT +D GPII Q VS +D S QK Sbjct: 179 LLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSE 238 Query: 174 SAEHLLYPLALKY 186 + E A+K Sbjct: 239 NLEKQCLAKAIKS 251 >gnl|CDD|183839 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed. Length = 286 Score = 88.5 bits (220), Expect = 1e-18 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY- 61 R ++I +S + L+ + + P +IVGV S++ + + L A +P P Sbjct: 89 RPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPL--AAWHGIPFHHFPIT 146 Query: 62 KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGL 121 D ++ + E +L + +L+ LA YM++LS + + +NIH S LP F G Sbjct: 147 PD--TKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGA 204 Query: 122 HTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVS 160 + + + G+K+ G T H VT ++DEGPII Q V Sbjct: 205 KPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVD 243 >gnl|CDD|161888 TIGR00460, fmt, methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. Length = 313 Score = 85.5 bits (212), Expect = 9e-18 Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 19/183 (10%) Query: 8 IFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKV---PTF------P 58 I G T L +++ +++++ E+VGV + R +K+ P Sbjct: 3 IVFFGTPTFSLPVLEELREDNF--EVVGVVTQPD----KPAGRGKKLTPPPVKVLAEEKG 56 Query: 59 IPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLF 118 IP +R+ E L + ++PD+I + + ++L ++F++ + +N+HPSLLP + Sbjct: 57 IPVFQPEKQRQLE--ELPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRW 114 Query: 119 PGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKV--LSAE 176 G +R + +G K TG T+ + MD G I+ Q P+ +D +LS K+ L A+ Sbjct: 115 RGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQ 174 Query: 177 HLL 179 L+ Sbjct: 175 LLI 177 >gnl|CDD|177923 PLN02285, PLN02285, methionyl-tRNA formyltransferase. Length = 334 Score = 80.5 bits (199), Expect = 3e-16 Identities = 38/107 (35%), Positives = 53/107 (49%) Query: 68 REHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRV 127 + E+ L L +QPDL A Y +L + F++ K +NIHPSLLPL+ G +R Sbjct: 79 KAGEEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRA 138 Query: 128 LQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLS 174 LQ G+ TG +V +D GP+IAQ V V L + Sbjct: 139 LQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLPLLFE 185 >gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated. Length = 660 Score = 64.2 bits (157), Expect = 2e-11 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 78 LSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGC 137 + + PD+I Y LLS + ++ N+H SLLP + G VL +G TG Sbjct: 71 IRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGV 130 Query: 138 TVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKV-LSAEHLL 179 T+H + D G I+AQ V ++ DT +L K+ +A LL Sbjct: 131 TLHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLL 173 >gnl|CDD|178787 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed. Length = 309 Score = 60.1 bits (147), Expect = 4e-10 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 8/116 (6%) Query: 73 AILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG---LHTHRRVLQ 129 L +L+++ D+I + Y ++L + ++ + +N+H SLLP + G + R + Sbjct: 69 EFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAPIQ---RAII 125 Query: 130 SGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQK--VLSAEHLLYPLA 183 +G TG T+ + +D G ++ +A VP++ DT L K L A+ L+ L Sbjct: 126 AGDAETGVTIMQMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLK 181 >gnl|CDD|180785 PRK06988, PRK06988, putative formyltransferase; Provisional. Length = 312 Score = 49.7 bits (119), Expect = 5e-07 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%) Query: 77 QLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG-LHTHRRVLQSGIKIT 135 +++ PD I Y ++ D + N+H SLLP + G + + VL G T Sbjct: 72 AVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLN-GETET 130 Query: 136 GCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSA 175 G T+H + A D G I+ Q AVP+ DT + + KV A Sbjct: 131 GATLHEMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVA 170 >gnl|CDD|181046 PRK07579, PRK07579, hypothetical protein; Provisional. Length = 245 Score = 45.3 bits (107), Expect = 1e-05 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 108 LNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESS 167 +NIHP P G + +G+KI G T+H + +D GPIIAQ V + S D+ S Sbjct: 89 INIHPGFNPYNRGWFPQVFSIINGLKI-GATIHEMDEQLDHGPIIAQREVEIESWDSSGS 147 Query: 168 LSQKVLSAE 176 + +V+ E Sbjct: 148 VYARVMDIE 156 >gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional. Length = 295 Score = 28.0 bits (63), Expect = 1.9 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 11/59 (18%) Query: 114 LLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMD-EGPIIAQAAVP-VSSQDTESSLSQ 170 LLP PG T+R ++ G++ T+ D +G I++ P +S + E++L Q Sbjct: 56 LLPYLPGEKTYRGTIRFGVR---------TSTDDLQGEILSSQPWPHLSLAEIETALPQ 105 >gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase. Length = 338 Score = 27.8 bits (61), Expect = 2.1 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 28 DYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD----YISRREHE-KAILMQLSSIQ 82 D+ E GVF+D A +K +KV P KD + EHE K+ L +S+ Sbjct: 97 DFVVESTGVFTDKDKAAAHLKGGAKKV-VISAPSKDAPMFVVGVNEHEYKSDLDIVSNAS 155 Query: 83 PDLICLAGYMRLLSRDF 99 CLA ++++ F Sbjct: 156 CTTNCLAPLAKVINDRF 172 >gnl|CDD|163334 TIGR03573, WbuX, N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an invariable contextual association with homologs of the HisH and HisF proteins known as WbuY and WbuZ, respectively. These two proteins are believed to supply the enzyme with ammonium by hydrolysis of glutamine and delivery through an ammonium conduit. Length = 343 Score = 26.5 bits (59), Expect = 4.5 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Query: 99 FVESYKNKILNIHPSLLPLFPGLHTH--RRVLQSGIKITGCTVHMVTANMDE 148 + K L ++P L+ + PG +T + L + IK G +H +T N + Sbjct: 74 YQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPET 125 >gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase. Length = 447 Score = 26.2 bits (58), Expect = 6.0 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Query: 115 LPLFPGLHTHRRVLQSGIKITGCTVH-----MVTANMDEGPIIAQAAVPVSSQDTESSLS 169 LP+ P +RVL GI T VH MV + PI+A A V +S Sbjct: 289 LPVIP-----QRVL--GIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFR 341 Query: 170 QKVLSAE 176 LSAE Sbjct: 342 GDELSAE 348 >gnl|CDD|147966 pfam06092, DUF943, Enterobacterial putative membrane protein (DUF943). This family consists of several hypothetical putative membrane proteins from Escherichia coli, Yersinia pestis and Salmonella typhi. Length = 155 Score = 26.2 bits (58), Expect = 6.5 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 7/52 (13%) Query: 30 PAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81 P EIV V DN ++ LV+ FPI K I+ K +L I Sbjct: 27 PVEIVAVHQDNGSSDILVR-------NFPITDKGKINWWLENKDMLKAKYGI 71 >gnl|CDD|178802 PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed. Length = 380 Score = 25.8 bits (58), Expect = 7.7 Identities = 10/27 (37%), Positives = 11/27 (40%) Query: 20 LIQATKKNDYPAEIVGVFSDNSNAQGL 46 LI+A K E VGV A G Sbjct: 20 LIRALKARAPNLEFVGVGGPRMQAAGC 46 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 25.7 bits (56), Expect = 9.3 Identities = 14/30 (46%), Positives = 17/30 (56%) Query: 12 GEGTNMLSLIQATKKNDYPAEIVGVFSDNS 41 GE N LS I+A K D A+I G DN+ Sbjct: 1093 GEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.135 0.384 Gapped Lambda K H 0.267 0.0731 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,223,056 Number of extensions: 193175 Number of successful extensions: 367 Number of sequences better than 10.0: 1 Number of HSP's gapped: 360 Number of HSP's successfully gapped: 26 Length of query: 205 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 116 Effective length of database: 4,071,361 Effective search space: 472277876 Effective search space used: 472277876 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.0 bits)