RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>gnl|CDD|180182 PRK05647, purN, phosphoribosylglycinamide formyltransferase;
Reviewed.
Length = 200
Score = 283 bits (726), Expect = 3e-77
Identities = 95/188 (50%), Positives = 129/188 (68%)
Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63
K IV+ SG G+N+ ++I A PAEIV V SD +A GL +A +PTF + +KD
Sbjct: 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKD 61
Query: 64 YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT 123
+ SR + A++ L + QPDL+ LAG+MR+L FV +Y+ +I+NIHPSLLP FPGLHT
Sbjct: 62 FPSREAFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLHT 121
Query: 124 HRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLA 183
H + L++G+K+ GCTVH V +D GPIIAQAAVPV + DTE SL+ +VL EH LYPL
Sbjct: 122 HEQALEAGVKVHGCTVHFVDEGLDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLV 181
Query: 184 LKYTILGK 191
+K+ G+
Sbjct: 182 VKWFAEGR 189
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase,
formyltetrahydrofolate-dependent. In phylogenetic
analyses, the member from Saccharomyces cerevisiae shows
a long branch length but membership in the family, while
the formyltetrahydrofolate deformylases form a closely
related outgroup.
Length = 190
Score = 218 bits (556), Expect = 1e-57
Identities = 84/182 (46%), Positives = 123/182 (67%)
Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63
K IV+ ISG G+N+ ++I A K+ PA +V V S+ +A GL +A + +PTF + KD
Sbjct: 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKD 60
Query: 64 YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT 123
+ SR ++AI+ +L + + DL+ LAG+MR+L F+ + +ILNIHPSLLP FPGLH
Sbjct: 61 FPSREAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHA 120
Query: 124 HRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLA 183
+ L++G+K +GCTVH V +D GPIIAQA VP+ +DTE +L Q++ EH +YPLA
Sbjct: 121 VEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLA 180
Query: 184 LK 185
+
Sbjct: 181 IA 182
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase.
Length = 207
Score = 135 bits (343), Expect = 5e-33
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64
+ +F+SG G+N ++ A ++V V ++ G AR+ +P P
Sbjct: 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYP---- 56
Query: 65 ISRREHE----KAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120
++ E + ++ L D + LAGY++L+ + V +Y ILNIHP+LLP F G
Sbjct: 57 KTKGEPDGLSPDELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGG 116
Query: 121 -----LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSA 175
+ H+ V+ SG + +G TVH V + D G I+AQ VPV + DT L+ +VL
Sbjct: 117 KGYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHE 176
Query: 176 EHLLYP 181
EH LY
Sbjct: 177 EHQLYV 182
>gnl|CDD|161980 TIGR00655, PurU, formyltetrahydrofolate deformylase. This model
describes formyltetrahydrofolate deformylases. The
enzyme is a homohexamer. Sequences from a related enzyme
formyl tetrahydrofolate-specific enzyme,
phosphoribosylglycinamide formyltransferase, serve as an
outgroup for phylogenetic analysis. Putative members of
this family, scoring below the trusted cutoff, include a
sequence from Rhodobacter capsulatus that lacks an
otherwise conserved C-terminal region.
Length = 280
Score = 132 bits (334), Expect = 7e-32
Identities = 69/182 (37%), Positives = 96/182 (52%), Gaps = 3/182 (1%)
Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63
K + I +S E + L+ + AEI V S++ + + LV + +P IP
Sbjct: 85 KRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLV--ERFGIPFHYIP-AT 141
Query: 64 YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT 123
+R EHEK L L Q DL+ LA YM++LS DFV+ Y NKI+NIH S LP F G +
Sbjct: 142 KDNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANP 201
Query: 124 HRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLA 183
++R + G+KI G T H VT +DEGPII Q V V D L + E ++ A
Sbjct: 202 YQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARA 261
Query: 184 LK 185
+K
Sbjct: 262 VK 263
>gnl|CDD|180354 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.
Length = 286
Score = 119 bits (301), Expect = 5e-28
Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY- 61
RK +VI +S E + L+ + + P EI V S++ + + LV+ F IP+
Sbjct: 89 RKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVER-------FGIPFH 141
Query: 62 -----KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLP 116
K+ ++ E E +L + QPDL+ LA YM++LS DFV + +I+NIH S LP
Sbjct: 142 HVPVTKE--TKAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLP 199
Query: 117 LFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDT 164
F G + + + G+K+ G T H VTA++DEGPII Q + V +DT
Sbjct: 200 AFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDT 247
>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed.
Length = 289
Score = 92.9 bits (231), Expect = 5e-20
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 15/178 (8%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY- 61
R +VI +S + L+ + + +IVG+ S++ + Q L A + +P +P
Sbjct: 93 RPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPL--AVQHDIPFHHLPVT 150
Query: 62 KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGL 121
D ++ + E IL + + +L+ LA YM++LS D + +NIH S LP F G
Sbjct: 151 PD--TKAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGA 208
Query: 122 HTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLL 179
+ + G+K+ G T H VT ++DEGPII Q V S E L+
Sbjct: 209 RPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHSY----------SPEDLV 256
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase.
Length = 268
Score = 89.0 bits (221), Expect = 7e-19
Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 59 IPYKDYIS-----RREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPS 113
IPY Y+ +RE E L++ D + LA YM++LS +F++ Y I+NIH
Sbjct: 124 IPYH-YLPTTKENKREDEILELVK----GTDFLVLARYMQILSGNFLKGYGKDIINIHHG 178
Query: 114 LLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVL 173
LLP F G + ++ +G+K+ G T H VT +D GPII Q VS +D S QK
Sbjct: 179 LLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSE 238
Query: 174 SAEHLLYPLALKY 186
+ E A+K
Sbjct: 239 NLEKQCLAKAIKS 251
>gnl|CDD|183839 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed.
Length = 286
Score = 88.5 bits (220), Expect = 1e-18
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY- 61
R ++I +S + L+ + + P +IVGV S++ + + L A +P P
Sbjct: 89 RPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPL--AAWHGIPFHHFPIT 146
Query: 62 KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGL 121
D ++ + E +L + +L+ LA YM++LS + + +NIH S LP F G
Sbjct: 147 PD--TKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGA 204
Query: 122 HTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVS 160
+ + + G+K+ G T H VT ++DEGPII Q V
Sbjct: 205 KPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVD 243
>gnl|CDD|161888 TIGR00460, fmt, methionyl-tRNA formyltransferase. The top-scoring
characterized proteins other than methionyl-tRNA
formyltransferase (fmt) itself are
formyltetrahydrofolate dehydrogenases. The mitochondrial
methionyl-tRNA formyltransferases are so divergent that,
in a multiple alignment of bacterial fmt, mitochondrial
fmt, and formyltetrahydrofolate dehydrogenases, the
mitochondrial fmt appears the most different. However,
because both bacterial and mitochondrial fmt are
included in the seed alignment, all credible fmt
sequences score higher than any non-fmt sequence. This
enzyme modifies Met on initiator tRNA to f-Met.
Length = 313
Score = 85.5 bits (212), Expect = 9e-18
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 19/183 (10%)
Query: 8 IFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKV---PTF------P 58
I G T L +++ +++++ E+VGV + R +K+ P
Sbjct: 3 IVFFGTPTFSLPVLEELREDNF--EVVGVVTQPD----KPAGRGKKLTPPPVKVLAEEKG 56
Query: 59 IPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLF 118
IP +R+ E L + ++PD+I + + ++L ++F++ + +N+HPSLLP +
Sbjct: 57 IPVFQPEKQRQLE--ELPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRW 114
Query: 119 PGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKV--LSAE 176
G +R + +G K TG T+ + MD G I+ Q P+ +D +LS K+ L A+
Sbjct: 115 RGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQ 174
Query: 177 HLL 179
L+
Sbjct: 175 LLI 177
>gnl|CDD|177923 PLN02285, PLN02285, methionyl-tRNA formyltransferase.
Length = 334
Score = 80.5 bits (199), Expect = 3e-16
Identities = 38/107 (35%), Positives = 53/107 (49%)
Query: 68 REHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRV 127
+ E+ L L +QPDL A Y +L + F++ K +NIHPSLLPL+ G +R
Sbjct: 79 KAGEEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRA 138
Query: 128 LQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLS 174
LQ G+ TG +V +D GP+IAQ V V L +
Sbjct: 139 LQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLPLLFE 185
>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid
decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
formyltransferase; Validated.
Length = 660
Score = 64.2 bits (157), Expect = 2e-11
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 78 LSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGC 137
+ + PD+I Y LLS + ++ N+H SLLP + G VL +G TG
Sbjct: 71 IRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGV 130
Query: 138 TVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKV-LSAEHLL 179
T+H + D G I+AQ V ++ DT +L K+ +A LL
Sbjct: 131 TLHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLL 173
>gnl|CDD|178787 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.
Length = 309
Score = 60.1 bits (147), Expect = 4e-10
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 73 AILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG---LHTHRRVLQ 129
L +L+++ D+I + Y ++L + ++ + +N+H SLLP + G + R +
Sbjct: 69 EFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAPIQ---RAII 125
Query: 130 SGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQK--VLSAEHLLYPLA 183
+G TG T+ + +D G ++ +A VP++ DT L K L A+ L+ L
Sbjct: 126 AGDAETGVTIMQMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLK 181
>gnl|CDD|180785 PRK06988, PRK06988, putative formyltransferase; Provisional.
Length = 312
Score = 49.7 bits (119), Expect = 5e-07
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 77 QLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG-LHTHRRVLQSGIKIT 135
+++ PD I Y ++ D + N+H SLLP + G + + VL G T
Sbjct: 72 AVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLN-GETET 130
Query: 136 GCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSA 175
G T+H + A D G I+ Q AVP+ DT + + KV A
Sbjct: 131 GATLHEMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVA 170
>gnl|CDD|181046 PRK07579, PRK07579, hypothetical protein; Provisional.
Length = 245
Score = 45.3 bits (107), Expect = 1e-05
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 108 LNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESS 167
+NIHP P G + +G+KI G T+H + +D GPIIAQ V + S D+ S
Sbjct: 89 INIHPGFNPYNRGWFPQVFSIINGLKI-GATIHEMDEQLDHGPIIAQREVEIESWDSSGS 147
Query: 168 LSQKVLSAE 176
+ +V+ E
Sbjct: 148 VYARVMDIE 156
>gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional.
Length = 295
Score = 28.0 bits (63), Expect = 1.9
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 114 LLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMD-EGPIIAQAAVP-VSSQDTESSLSQ 170
LLP PG T+R ++ G++ T+ D +G I++ P +S + E++L Q
Sbjct: 56 LLPYLPGEKTYRGTIRFGVR---------TSTDDLQGEILSSQPWPHLSLAEIETALPQ 105
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase.
Length = 338
Score = 27.8 bits (61), Expect = 2.1
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 28 DYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD----YISRREHE-KAILMQLSSIQ 82
D+ E GVF+D A +K +KV P KD + EHE K+ L +S+
Sbjct: 97 DFVVESTGVFTDKDKAAAHLKGGAKKV-VISAPSKDAPMFVVGVNEHEYKSDLDIVSNAS 155
Query: 83 PDLICLAGYMRLLSRDF 99
CLA ++++ F
Sbjct: 156 CTTNCLAPLAKVINDRF 172
>gnl|CDD|163334 TIGR03573, WbuX, N-acetyl sugar amidotransferase. This enzyme has
been implicated in the formation of the acetamido moiety
(sugar-NC(=NH)CH3) which is found on some
exopolysaccharides and is positively charged at neutral
pH. The reaction involves ligation of ammonia with a
sugar N-acetyl group, displacing water. In E. coli (O145
strain) and Pseudomonas aeruginosa (O12 strain) this
gene is known as wbuX and ifnA respectively and likely
acts on sialic acid. In Campylobacter jejuni, the gene
is known as pseA and acts on pseudaminic acid in the
process of flagellin glycosylation. In other Pseudomonas
strains and various organisms it is unclear what the
identity of the sugar substrate is, and in fact, the
phylogenetic tree of this family sports a considerably
deep branching suggestive of possible major differences
in substrate structure. Nevertheless, the family is
characterized by a conserved tetracysteine motif
(CxxC.....[GN]xCxxC) possibly indicative of a metal
binding site, as well as an invariable contextual
association with homologs of the HisH and HisF proteins
known as WbuY and WbuZ, respectively. These two proteins
are believed to supply the enzyme with ammonium by
hydrolysis of glutamine and delivery through an ammonium
conduit.
Length = 343
Score = 26.5 bits (59), Expect = 4.5
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 99 FVESYKNKILNIHPSLLPLFPGLHTH--RRVLQSGIKITGCTVHMVTANMDE 148
+ K L ++P L+ + PG +T + L + IK G +H +T N +
Sbjct: 74 YQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPET 125
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 26.2 bits (58), Expect = 6.0
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 115 LPLFPGLHTHRRVLQSGIKITGCTVH-----MVTANMDEGPIIAQAAVPVSSQDTESSLS 169
LP+ P +RVL GI T VH MV + PI+A A V +S
Sbjct: 289 LPVIP-----QRVL--GIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFR 341
Query: 170 QKVLSAE 176
LSAE
Sbjct: 342 GDELSAE 348
>gnl|CDD|147966 pfam06092, DUF943, Enterobacterial putative membrane protein
(DUF943). This family consists of several hypothetical
putative membrane proteins from Escherichia coli,
Yersinia pestis and Salmonella typhi.
Length = 155
Score = 26.2 bits (58), Expect = 6.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 30 PAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSI 81
P EIV V DN ++ LV+ FPI K I+ K +L I
Sbjct: 27 PVEIVAVHQDNGSSDILVR-------NFPITDKGKINWWLENKDMLKAKYGI 71
>gnl|CDD|178802 PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.
Length = 380
Score = 25.8 bits (58), Expect = 7.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 20 LIQATKKNDYPAEIVGVFSDNSNAQGL 46
LI+A K E VGV A G
Sbjct: 20 LIRALKARAPNLEFVGVGGPRMQAAGC 46
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 25.7 bits (56), Expect = 9.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 12 GEGTNMLSLIQATKKNDYPAEIVGVFSDNS 41
GE N LS I+A K D A+I G DN+
Sbjct: 1093 GEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,223,056
Number of extensions: 193175
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 26
Length of query: 205
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,071,361
Effective search space: 472277876
Effective search space used: 472277876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)