RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)



>1meo_A Phosophoribosylglycinamide formyltransferase; purine
           biosynthesis; 1.72A {Homo sapiens} (A:)
          Length = 209

 Score =  158 bits (401), Expect = 5e-40
 Identities = 80/186 (43%), Positives = 120/186 (64%)

Query: 6   IVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYI 65
           + + ISG G+N+ +LI +T++ +  A+I  V S+ +   GL KA +  +PT  I +K Y 
Sbjct: 3   VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 62

Query: 66  SRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHR 125
           +R E + AI + L     D++CLAG+MR+LS  FV+ +  K+LNIHPSLLP F G + H 
Sbjct: 63  NRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHE 122

Query: 126 RVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLALK 185
           + L++G+ +TGCTVH V  ++D G II Q AVPV   DT ++LS++V  AEH ++P AL+
Sbjct: 123 QALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 182

Query: 186 YTILGK 191
               G 
Sbjct: 183 LVASGT 188


>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
           biosynthesis, anti-cancer agent; HET: 138; 1.60A
           {Escherichia coli} (A:)
          Length = 212

 Score =  157 bits (398), Expect = 8e-40
 Identities = 76/188 (40%), Positives = 121/188 (64%)

Query: 5   NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64
           NIV+ ISG G+N+ ++I A K N     +  VFS+ ++A GL +AR+  + T  +    +
Sbjct: 2   NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61

Query: 65  ISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTH 124
            SR  +++ ++ ++    PD++ LAG+MR+LS  FV  Y  ++LNIHPSLLP +PGLHTH
Sbjct: 62  DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTH 121

Query: 125 RRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLAL 184
           R+ L++G +  G +VH VT  +D GP+I QA VPV + D+E  ++ +V + EH +YPL +
Sbjct: 122 RQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVI 181

Query: 185 KYTILGKT 192
            +   G+ 
Sbjct: 182 SWFADGRL 189


>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase
           PURN; glycinamide ribonucleotide transformylase,
           structure; 1.30A {Mycobacterium tuberculosis} PDB:
           3dcj_A* (A:)
          Length = 215

 Score =  156 bits (396), Expect = 2e-39
 Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 2/189 (1%)

Query: 3   RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
              +V+  SG G+ + SL+ A    DYPA +V V   +   +    A +  VP F +   
Sbjct: 12  PARLVVLASGTGSLLRSLLDA-AVGDYPARVVAVGV-DRECRAAEIAAEASVPVFTVRLA 69

Query: 63  DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
           D+ SR   + AI    ++ +PDL+  AG+MR+L   F+  +  + LN HP+LLP FPG H
Sbjct: 70  DHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTH 129

Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
                L  G+K+TG TVH+V A  D GPI+AQ  VPV   D E +L +++   E  L   
Sbjct: 130 GVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVA 189

Query: 183 ALKYTILGK 191
           A+       
Sbjct: 190 AVAALATHG 198


>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
           structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
           (A:)
          Length = 216

 Score =  154 bits (390), Expect = 8e-39
 Identities = 67/187 (35%), Positives = 116/187 (62%)

Query: 5   NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64
            I + +SG G+N+ ++I A +     A I  V SDN  A  + + +K  V    I  K++
Sbjct: 3   KIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEF 62

Query: 65  ISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTH 124
            S++E E+   ++L     +L+ LAG+ R+LS +F++ + NK++NIHPSL+P F GLH  
Sbjct: 63  PSKKEFEERXALELKKKGVELVVLAGFXRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQ 122

Query: 125 RRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLAL 184
           ++ ++ G+K +GCTVH+V  ++D GP+I QA VPV  +D E++L+ ++L  EH + P  +
Sbjct: 123 KQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTV 182

Query: 185 KYTILGK 191
           ++    +
Sbjct: 183 QWFAQDR 189


>3lou_A Formyltetrahydrofolate deformylase; structural genomics,
           joint center for structural genomics, JCSG, protein
           structure initiative, PSI-2; HET: MSE; 1.90A
           {Burkholderia mallei} (A:94-292)
          Length = 199

 Score =  147 bits (371), Expect = 1e-36
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 3/189 (1%)

Query: 3   RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
           R  ++I +S     +  L+   K  +   +IVG+ S++ +   L  A +  +P    P  
Sbjct: 2   RPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHPDFAPL--AAQHGLPFRHFPIT 59

Query: 63  DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
              ++ + E   L    +   +L+ LA Y ++LS +      N+ +NIH S LP F G  
Sbjct: 60  AD-TKAQQEAQWLDVFETSGAELVILARYXQVLSPEASARLANRAINIHHSFLPGFKGAK 118

Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
            + +    G+K+ G T H VT ++DEGPII Q    V        L       E +    
Sbjct: 119 PYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLAR 178

Query: 183 ALKYTILGK 191
           A+K  I  +
Sbjct: 179 AVKAFIERR 187


>3kcq_A Phosphoribosylglycinamide formyltransferase; structural
           genomics, niaid, seattle structural genomics center for
           infectious disease; 2.20A {Anaplasma phagocytophilum HZ}
           (A:)
          Length = 215

 Score =  146 bits (370), Expect = 2e-36
 Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 5/189 (2%)

Query: 3   RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
              + + ISG G+N+ +L +A    +    I  V S+N+ A+GL+ A+   +PTF +   
Sbjct: 8   ELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKR- 66

Query: 63  DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
               +    + I   L     DL+CLAG+M +L   FV  + +KI+NIHPSLLP F GL+
Sbjct: 67  ----KPLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLN 122

Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
              +  ++G+KI GCT+H V   +D GPII QAAVPV  +DT  SL+ ++L+AEH+ YP 
Sbjct: 123 AQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPK 182

Query: 183 ALKYTILGK 191
            +K     K
Sbjct: 183 GVKLIAQDK 191


>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase;
           nucleotide biosynthesis, oxidoreductase; 1.7A {Homo
           sapiens} (A:1-232)
          Length = 232

 Score =  146 bits (368), Expect = 3e-36
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 1/192 (0%)

Query: 1   MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIP 60
           +  +++ I + G+      +    +K  +    V    D       +    EK       
Sbjct: 18  LYFQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFK 77

Query: 61  YKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120
           Y  + ++ +    ++ +  ++  +L  L    + +  + + + ++  +  HPSLLP   G
Sbjct: 78  YSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRG 137

Query: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHL-L 179
                  L  G K  G ++      +D G ++ Q    V   DT S+L  + L  E +  
Sbjct: 138 ASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKG 197

Query: 180 YPLALKYTILGK 191
              A++    GK
Sbjct: 198 MVQAVRLIAEGK 209


>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N
           biosynthesis, methyltransferase; HET: FON U5P; 1.2A
           {Escherichia coli} (A:1-207)
          Length = 207

 Score =  141 bits (357), Expect = 6e-35
 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 8/189 (4%)

Query: 5   NIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
             V+F   +     + +L+ A        EI  +F+   N                    
Sbjct: 2   KTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIP 55

Query: 63  DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
            Y     +    + +++ + PD+I    Y  L+  + ++       N+H SLLP + G  
Sbjct: 56  VYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRA 115

Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
               VL +G   TG T+H +    D G I+AQ  + ++  D   +L  K+  A   L   
Sbjct: 116 PLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQ 175

Query: 183 ALKYTILGK 191
            L     G 
Sbjct: 176 TLPAIKHGN 184


>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET:
           ATP UGA; 3.00A {Escherichia coli} (A:1-207)
          Length = 207

 Score =  141 bits (357), Expect = 6e-35
 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 8/189 (4%)

Query: 5   NIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
             V+F   +     + +L+ A        EI  +F+   N                    
Sbjct: 2   KTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIP 55

Query: 63  DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
            Y     +    + +++ + PD+I    Y  L+  + ++       N+H SLLP + G  
Sbjct: 56  VYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRA 115

Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
               VL +G   TG T+H +    D G I+AQ  + ++  D   +L  K+  A   L   
Sbjct: 116 PLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQ 175

Query: 183 ALKYTILGK 191
            L     G 
Sbjct: 176 TLPAIKHGN 184


>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA,
           translation initiation; 2.00A {Escherichia coli}
           (A:1-204)
          Length = 204

 Score =  137 bits (346), Expect = 1e-33
 Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 5/191 (2%)

Query: 4   KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63
           +++ I  +G        + A         +VGVF+      G  K             K 
Sbjct: 2   ESLRIIFAGTPDFAARHLDALL--SSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG 59

Query: 64  ---YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120
              +       +     ++ +Q D++ +  Y  +L +  +E  +   +N+H SLLP + G
Sbjct: 60  LPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRG 119

Query: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLY 180
               +R L +G   TG T+  +   +D G ++ + + P++++DT  +L  K+        
Sbjct: 120 AAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGL 179

Query: 181 PLALKYTILGK 191
              LK    G 
Sbjct: 180 ITTLKQLADGT 190


>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory
           for structural genomics, PSI, protein structure
           initiative, secsg; 2.05A {Clostridium thermocellum atcc
           27405} (A:1-201)
          Length = 201

 Score =  126 bits (317), Expect = 2e-30
 Identities = 20/190 (10%), Positives = 58/190 (30%), Gaps = 16/190 (8%)

Query: 2   IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY 61
              +    +   G+   SL +          I+      +        ++ +        
Sbjct: 6   HHHHHSSGLVPRGSQSTSLYKK---AGLXNIIIATTKSWNIKNAQKFKKENESKYN---- 58

Query: 62  KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGL 121
                    ++    ++  I P+ I    +  ++ ++         +  H + LP   G 
Sbjct: 59  --TTIITNKDELTFEKVKLINPEYILFPHWSWIIPKEIF--ENFTCVVFHXTDLPFGRGG 114

Query: 122 HTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYP 181
              + +++ GIK T  +   V   +D G I  +  + +    T   +  +      +++ 
Sbjct: 115 SPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--GTAEEIFXRA---SKIIFN 169

Query: 182 LALKYTILGK 191
             +   +  +
Sbjct: 170 DXIPELLTKR 179


>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
          endocytosis/exocytosis complex; 7.90A {Bos taurus}
          (A:1001-1076)
          Length = 76

 Score = 27.3 bits (61), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 12/40 (30%)

Query: 36 VFSDNSNAQGL-----VKARKEKVPTFPIPYKDYISRREH 70
          VFS++ N Q L     +KA + +V        +YI+R ++
Sbjct: 17 VFSEHRNLQNLLILTAIKADRTRV-------MEYINRLDN 49


>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B;
          CBM_21 domain, carbohydrate binding domain, structural
          genomics, NPPSFA; NMR {Homo sapiens} (A:)
          Length = 156

 Score = 26.4 bits (58), Expect = 3.0
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 51 KEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDF 99
          +  V  F  P  DY+  R   +A  + L +       +AG +++ +  F
Sbjct: 11 ESFVLDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAF 59


>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural
           genomics, PSI, protein structure initiative; 1.60A
           {Pseudomonas putida KT2440} (A:)
          Length = 175

 Score = 25.2 bits (55), Expect = 6.0
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 107 ILNIHPSLLPL-FPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAV 157
           I        PL    L  H    Q+ I + G    +V A + + P+      
Sbjct: 58  IFRADAQDXPLTVRXLERHPLGSQAFIPLLGNPFLIVVAPVGDAPVSGLVRA 109


>2vt3_A REX, redox-sensing transcriptional repressor REX;
          transcriptional regulation, transcription regulation,
          redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A
          {Bacillus subtilis} PDB: 2vt2_A* (A:86-215)
          Length = 130

 Score = 25.3 bits (55), Expect = 6.8
 Identities = 6/38 (15%), Positives = 13/38 (34%)

Query: 8  IFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQG 45
          + + G G    + +      +   +I   F  N +  G
Sbjct: 3  VILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIG 40


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,447,127
Number of extensions: 58066
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 17
Length of query: 205
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 121
Effective length of database: 2,116,429
Effective search space: 256087909
Effective search space used: 256087909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)