RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} (A:) Length = 209 Score = 158 bits (401), Expect = 5e-40 Identities = 80/186 (43%), Positives = 120/186 (64%) Query: 6 IVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYI 65 + + ISG G+N+ +LI +T++ + A+I V S+ + GL KA + +PT I +K Y Sbjct: 3 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 62 Query: 66 SRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHR 125 +R E + AI + L D++CLAG+MR+LS FV+ + K+LNIHPSLLP F G + H Sbjct: 63 NRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHE 122 Query: 126 RVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLALK 185 + L++G+ +TGCTVH V ++D G II Q AVPV DT ++LS++V AEH ++P AL+ Sbjct: 123 QALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 182 Query: 186 YTILGK 191 G Sbjct: 183 LVASGT 188 >1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} (A:) Length = 212 Score = 157 bits (398), Expect = 8e-40 Identities = 76/188 (40%), Positives = 121/188 (64%) Query: 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64 NIV+ ISG G+N+ ++I A K N + VFS+ ++A GL +AR+ + T + + Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61 Query: 65 ISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTH 124 SR +++ ++ ++ PD++ LAG+MR+LS FV Y ++LNIHPSLLP +PGLHTH Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTH 121 Query: 125 RRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLAL 184 R+ L++G + G +VH VT +D GP+I QA VPV + D+E ++ +V + EH +YPL + Sbjct: 122 RQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVI 181 Query: 185 KYTILGKT 192 + G+ Sbjct: 182 SWFADGRL 189 >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* (A:) Length = 215 Score = 156 bits (396), Expect = 2e-39 Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 2/189 (1%) Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62 +V+ SG G+ + SL+ A DYPA +V V + + A + VP F + Sbjct: 12 PARLVVLASGTGSLLRSLLDA-AVGDYPARVVAVGV-DRECRAAEIAAEASVPVFTVRLA 69 Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122 D+ SR + AI ++ +PDL+ AG+MR+L F+ + + LN HP+LLP FPG H Sbjct: 70 DHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTH 129 Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182 L G+K+TG TVH+V A D GPI+AQ VPV D E +L +++ E L Sbjct: 130 GVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVA 189 Query: 183 ALKYTILGK 191 A+ Sbjct: 190 AVAALATHG 198 >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} (A:) Length = 216 Score = 154 bits (390), Expect = 8e-39 Identities = 67/187 (35%), Positives = 116/187 (62%) Query: 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64 I + +SG G+N+ ++I A + A I V SDN A + + +K V I K++ Sbjct: 3 KIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEF 62 Query: 65 ISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTH 124 S++E E+ ++L +L+ LAG+ R+LS +F++ + NK++NIHPSL+P F GLH Sbjct: 63 PSKKEFEERXALELKKKGVELVVLAGFXRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQ 122 Query: 125 RRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLAL 184 ++ ++ G+K +GCTVH+V ++D GP+I QA VPV +D E++L+ ++L EH + P + Sbjct: 123 KQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTV 182 Query: 185 KYTILGK 191 ++ + Sbjct: 183 QWFAQDR 189 >3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} (A:94-292) Length = 199 Score = 147 bits (371), Expect = 1e-36 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 3/189 (1%) Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62 R ++I +S + L+ K + +IVG+ S++ + L A + +P P Sbjct: 2 RPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHPDFAPL--AAQHGLPFRHFPIT 59 Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122 ++ + E L + +L+ LA Y ++LS + N+ +NIH S LP F G Sbjct: 60 AD-TKAQQEAQWLDVFETSGAELVILARYXQVLSPEASARLANRAINIHHSFLPGFKGAK 118 Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182 + + G+K+ G T H VT ++DEGPII Q V L E + Sbjct: 119 PYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLAR 178 Query: 183 ALKYTILGK 191 A+K I + Sbjct: 179 AVKAFIERR 187 >3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} (A:) Length = 215 Score = 146 bits (370), Expect = 2e-36 Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 5/189 (2%) Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62 + + ISG G+N+ +L +A + I V S+N+ A+GL+ A+ +PTF + Sbjct: 8 ELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKR- 66 Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122 + + I L DL+CLAG+M +L FV + +KI+NIHPSLLP F GL+ Sbjct: 67 ----KPLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLN 122 Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182 + ++G+KI GCT+H V +D GPII QAAVPV +DT SL+ ++L+AEH+ YP Sbjct: 123 AQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPK 182 Query: 183 ALKYTILGK 191 +K K Sbjct: 183 GVKLIAQDK 191 >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} (A:1-232) Length = 232 Score = 146 bits (368), Expect = 3e-36 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 1/192 (0%) Query: 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIP 60 + +++ I + G+ + +K + V D + EK Sbjct: 18 LYFQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFK 77 Query: 61 YKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120 Y + ++ + ++ + ++ +L L + + + + + ++ + HPSLLP G Sbjct: 78 YSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRG 137 Query: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHL-L 179 L G K G ++ +D G ++ Q V DT S+L + L E + Sbjct: 138 ASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKG 197 Query: 180 YPLALKYTILGK 191 A++ GK Sbjct: 198 MVQAVRLIAEGK 209 >2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} (A:1-207) Length = 207 Score = 141 bits (357), Expect = 6e-35 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 8/189 (4%) Query: 5 NIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62 V+F + + +L+ A EI +F+ N Sbjct: 2 KTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIP 55 Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122 Y + + +++ + PD+I Y L+ + ++ N+H SLLP + G Sbjct: 56 VYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRA 115 Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182 VL +G TG T+H + D G I+AQ + ++ D +L K+ A L Sbjct: 116 PLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQ 175 Query: 183 ALKYTILGK 191 L G Sbjct: 176 TLPAIKHGN 184 >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} (A:1-207) Length = 207 Score = 141 bits (357), Expect = 6e-35 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 8/189 (4%) Query: 5 NIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62 V+F + + +L+ A EI +F+ N Sbjct: 2 KTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIP 55 Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122 Y + + +++ + PD+I Y L+ + ++ N+H SLLP + G Sbjct: 56 VYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRA 115 Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182 VL +G TG T+H + D G I+AQ + ++ D +L K+ A L Sbjct: 116 PLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQ 175 Query: 183 ALKYTILGK 191 L G Sbjct: 176 TLPAIKHGN 184 >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} (A:1-204) Length = 204 Score = 137 bits (346), Expect = 1e-33 Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 5/191 (2%) Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63 +++ I +G + A +VGVF+ G K K Sbjct: 2 ESLRIIFAGTPDFAARHLDALL--SSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG 59 Query: 64 ---YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120 + + ++ +Q D++ + Y +L + +E + +N+H SLLP + G Sbjct: 60 LPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRG 119 Query: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLY 180 +R L +G TG T+ + +D G ++ + + P++++DT +L K+ Sbjct: 120 AAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGL 179 Query: 181 PLALKYTILGK 191 LK G Sbjct: 180 ITTLKQLADGT 190 >1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} (A:1-201) Length = 201 Score = 126 bits (317), Expect = 2e-30 Identities = 20/190 (10%), Positives = 58/190 (30%), Gaps = 16/190 (8%) Query: 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY 61 + + G+ SL + I+ + ++ + Sbjct: 6 HHHHHSSGLVPRGSQSTSLYKK---AGLXNIIIATTKSWNIKNAQKFKKENESKYN---- 58 Query: 62 KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGL 121 ++ ++ I P+ I + ++ ++ + H + LP G Sbjct: 59 --TTIITNKDELTFEKVKLINPEYILFPHWSWIIPKEIF--ENFTCVVFHXTDLPFGRGG 114 Query: 122 HTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYP 181 + +++ GIK T + V +D G I + + + T + + +++ Sbjct: 115 SPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--GTAEEIFXRA---SKIIFN 169 Query: 182 LALKYTILGK 191 + + + Sbjct: 170 DXIPELLTKR 179 >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1001-1076) Length = 76 Score = 27.3 bits (61), Expect = 1.6 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 12/40 (30%) Query: 36 VFSDNSNAQGL-----VKARKEKVPTFPIPYKDYISRREH 70 VFS++ N Q L +KA + +V +YI+R ++ Sbjct: 17 VFSEHRNLQNLLILTAIKADRTRV-------MEYINRLDN 49 >2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 156 Score = 26.4 bits (58), Expect = 3.0 Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 51 KEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDF 99 + V F P DY+ R +A + L + +AG +++ + F Sbjct: 11 ESFVLDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAF 59 >2bdr_A Ureidoglycolate hydrolase; all beta protein, structural genomics, PSI, protein structure initiative; 1.60A {Pseudomonas putida KT2440} (A:) Length = 175 Score = 25.2 bits (55), Expect = 6.0 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%) Query: 107 ILNIHPSLLPL-FPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAV 157 I PL L H Q+ I + G +V A + + P+ Sbjct: 58 IFRADAQDXPLTVRXLERHPLGSQAFIPLLGNPFLIVVAPVGDAPVSGLVRA 109 >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* (A:86-215) Length = 130 Score = 25.3 bits (55), Expect = 6.8 Identities = 6/38 (15%), Positives = 13/38 (34%) Query: 8 IFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQG 45 + + G G + + + +I F N + G Sbjct: 3 VILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIG 40 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.135 0.384 Gapped Lambda K H 0.267 0.0532 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,447,127 Number of extensions: 58066 Number of successful extensions: 180 Number of sequences better than 10.0: 1 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 17 Length of query: 205 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 121 Effective length of database: 2,116,429 Effective search space: 256087909 Effective search space used: 256087909 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.3 bits)