RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
GART {Escherichia coli [TaxId: 562]}
Length = 209
Score = 134 bits (337), Expect = 6e-33
Identities = 76/187 (40%), Positives = 121/187 (64%)
Query: 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64
NIV+ ISG G+N+ ++I A K N + VFS+ ++A GL +AR+ + T + +
Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61
Query: 65 ISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTH 124
SR +++ ++ ++ PD++ LAG+MR+LS FV Y ++LNIHPSLLP +PGLHTH
Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTH 121
Query: 125 RRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLAL 184
R+ L++G + G +VH VT +D GP+I QA VPV + D+E ++ +V + EH +YPL +
Sbjct: 122 RQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVI 181
Query: 185 KYTILGK 191
+ G+
Sbjct: 182 SWFADGR 188
Score = 25.6 bits (55), Expect = 3.2
Identities = 7/78 (8%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 60 PYKDYISRREHEKAILMQLSSIQPD--LICLAGYMRLLSRDFVESYKNKILNIHPSLLPL 117
++ + + E + + + D + L + + + D + ++ ++ PL
Sbjct: 120 THRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPL 179
Query: 118 FPGLHTHRRVLQSGIKIT 135
R+
Sbjct: 180 VISWFADGRLKMHENAAW 197
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
GART {Human (Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 122 bits (307), Expect = 2e-29
Identities = 80/186 (43%), Positives = 120/186 (64%)
Query: 6 IVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYI 65
+ + ISG G+N+ +LI +T++ + A+I V S+ + GL KA + +PT I +K Y
Sbjct: 3 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 62
Query: 66 SRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHR 125
+R E + AI + L D++CLAG+MR+LS FV+ + K+LNIHPSLLP F G + H
Sbjct: 63 NRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHE 122
Query: 126 RVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLALK 185
+ L++G+ +TGCTVH V ++D G II Q AVPV DT ++LS++V AEH ++P AL+
Sbjct: 123 QALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 182
Query: 186 YTILGK 191
G
Sbjct: 183 LVASGT 188
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase
{Clostridium thermocellum [TaxId: 1515]}
Length = 164
Score = 67.8 bits (165), Expect = 6e-13
Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 15/152 (9%)
Query: 40 NSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDF 99
NAQ K + K T I KD + ++ I P+ I + ++ ++
Sbjct: 13 IKNAQKFKKENESKYNTTIITNKD--------ELTFEKVKLINPEYILFPHWSWIIPKEI 64
Query: 100 VESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPV 159
E++ + H + LP G + +++ GIK T + V +D G I + + +
Sbjct: 65 FENF--TCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDL 122
Query: 160 SSQDTESSLSQKVLSAEHLLYPLALKYTILGK 191
T + + A +++ + + +
Sbjct: 123 Y--GTAEEIFMR---ASKIIFNDMIPELLTKR 149
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase
{Escherichia coli [TaxId: 562]}
Length = 206
Score = 64.6 bits (156), Expect = 6e-12
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 10/184 (5%)
Query: 7 VIFISGEGTNMLSL--IQATKKNDYPAEIVGVFSDNSNAQGL---VKARKEKVPTFPIPY 61
+IF GT + + A + + +VGVF+ G + KV
Sbjct: 6 IIFA---GTPDFAARHLDALLSSGH--NVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGL 60
Query: 62 KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGL 121
+ + ++ +Q D++ + Y +L + +E + +N+H SLLP + G
Sbjct: 61 PVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGA 120
Query: 122 HTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYP 181
+R L +G TG T+ + +D G ++ + + P++++DT +L K+
Sbjct: 121 APIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLI 180
Query: 182 LALK 185
LK
Sbjct: 181 TTLK 184
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 203
Score = 44.7 bits (104), Expect = 6e-06
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 5/188 (2%)
Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63
K +V G + +A Y EI +F+ N
Sbjct: 2 KTVVFAYHDMGCLGI---EALLAAGY--EISAIFTHTDNPGEKAFYGSVARLAAERGIPV 56
Query: 64 YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT 123
Y + + +++ + PD+I Y L+ + ++ N+H SLLP + G
Sbjct: 57 YAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAP 116
Query: 124 HRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLA 183
VL +G TG T+H + D G I+AQ + ++ D +L K+ A L
Sbjct: 117 LNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQT 176
Query: 184 LKYTILGK 191
L G
Sbjct: 177 LPAIKHGN 184
>d1tu9a_ a.1.1.2 (A:) Hypothetical protein PA3967 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 131
Score = 28.4 bits (63), Expect = 0.44
Identities = 5/69 (7%), Positives = 16/69 (23%)
Query: 98 DFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAV 157
F + + L P + F + I ++ + + + +
Sbjct: 18 GFFDDFYRHFLASSPQIRAKFATTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHS 77
Query: 158 PVSSQDTES 166
+
Sbjct: 78 RAALDIRPE 86
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 28.1 bits (62), Expect = 0.57
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 3/119 (2%)
Query: 8 IFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISR 67
+ G+ ++ L + + E + S N+N + KA + + P +
Sbjct: 363 FGLYGDPDFVMGLTRFL--LELGCEPTVILSHNANKR-WQKAMNKMLDASPYGRDSEVFI 419
Query: 68 REHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRR 126
+ + QPD + Y + + RD + K + + PLF H HR+
Sbjct: 420 NCDLWHFRSLMFTRQPDFMIGNSYGKFIQRDTLAKGKAFEVPLIRLGFPLFDRHHLHRQ 478
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 25.7 bits (56), Expect = 3.2
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 39 DNSNAQGLVKARKEKV-PTFPIPY----KDYISRREHEKAILMQLSSIQPDLIC 87
NS + ++ K+YIS ++ + + + +QP IC
Sbjct: 20 TNSTFVQALVEHVKEECDRLGPGMADICKNYIS--QYSEIAIQMMMHMQPKEIC 71
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 25.0 bits (54), Expect = 4.6
Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 3/119 (2%)
Query: 8 IFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISR 67
+ G+ ++ L++ + E V + N N + KA + P +
Sbjct: 366 FALWGDPDFVMGLVKFLLELG--CEPVHILCHNGNKR-WKKAVDAILAASPYGKNATVYI 422
Query: 68 REHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRR 126
+ + + + +PD + Y + + RD + K + + P+F H HR
Sbjct: 423 GKDLWHLRSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHRS 481
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 25.0 bits (53), Expect = 5.4
Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 6 IVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYI 65
+++ +L L+ + +++ V N+ + + + PIP
Sbjct: 7 LIMQTYNRTDLLLRLLNHYQAVPSLHKVIVV--WNNVGEKGPEELWNSLGPHPIPVIFKP 64
Query: 66 SRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVE 101
+ L ++ + + + L+S +
Sbjct: 65 QTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLV 100
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 24.5 bits (51), Expect = 5.9
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 57 FPIPYKDYISRREHEKAILMQLSSIQPDLICL 88
F + I D++ L
Sbjct: 15 FSRNIYPNWGQMHRADLIAQADYMKNNDVVIL 46
>d1hqia_ d.137.1.1 (A:) Phenol hydroxylase P2 protein {Pseudomonas
sp., CF600 [TaxId: 306]}
Length = 90
Score = 24.6 bits (54), Expect = 6.3
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 36 VFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAIL-------------MQLSSIQ 82
F DN NA+ +V+A + P + + + R E EK + + +
Sbjct: 8 AFQDNDNARYVVEAIIQDNPHAVVQHHPAMIRIEAEKRLEIRRETVEENLGRAWDVQEML 67
Query: 83 PDLICLAGYMRLLSRDFVESYKN 105
D+I + G + FV +KN
Sbjct: 68 VDVITIGGNVDEDDDRFVLEWKN 90
>d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 112
Score = 24.5 bits (53), Expect = 6.9
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 42 NAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVE 101
N ++ + P P D + + ILM+ + P+ L ++R + +E
Sbjct: 2 NCSIMIDEIIHHLKRPPNPLLDPNNLNSEDMDILMERNLRTPN---LLAFVR--AVKHLE 56
Query: 102 SYKNKILNIHPSLLPLFP 119
+ + I +I +LLP P
Sbjct: 57 N-ASAIESILKNLLPCLP 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 707,991
Number of extensions: 30007
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 16
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)