Query gi|254780571|ref|YP_003064984.1| hypothetical protein CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 182
No_of_seqs 111 out of 492
Neff 8.9
Searched_HMMs 33803
Date Wed Jun 1 15:59:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780571.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1zug_A Phage 434 CRO protein; 10.8 82 0.0024 11.2 1.4 25 1-26 1-25 (71)
2 >1vq8_P 50S ribosomal protein 10.1 87 0.0026 11.0 0.9 14 1-14 18-31 (68)
3 >3cux_A Malate synthase; TIM b 9.4 92 0.0027 10.8 2.4 14 36-49 87-100 (107)
4 >1q8c_A Hypothetical protein M 9.2 52 0.0015 12.3 -0.9 29 3-31 4-32 (151)
5 >3fcp_A L-Ala-D/L-Glu epimeras 9.0 95 0.0028 10.7 2.0 25 2-26 90-114 (152)
6 >3i4k_A Muconate lactonizing e 9.0 95 0.0028 10.7 2.0 25 2-26 91-115 (153)
7 >3euh_C MUKE, chromosome parti 8.2 1E+02 0.003 10.5 0.8 12 167-178 73-84 (84)
8 >3i6e_A Muconate cycloisomeras 8.1 1E+02 0.0031 10.5 2.0 25 2-26 91-115 (152)
9 >3jyw_P 60S ribosomal protein 8.1 99 0.0029 10.7 0.1 16 1-16 18-33 (96)
10 >2zc8_A N-acylamino acid racem 7.7 1.1E+02 0.0032 10.4 1.1 23 4-26 86-108 (144)
No 1
>>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} (A:)
Probab=10.83 E-value=82 Score=11.15 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 92479999975124455489999999
Q gi|254780571|r 1 MKCIKNYILRFLSRENGVVAVEMAII 26 (182)
Q Consensus 1 ~~~~~~~lrrf~rd~~G~aaVEFAli 26 (182)
|+.+...+|++|. ++|..-.|+|=.
T Consensus 1 M~~ig~rlk~~r~-~~g~sq~~lA~~ 25 (71)
T 1zug_A 1 MQTLSERLKKRRI-ALKMTQTELATK 25 (71)
T ss_dssp CCSHHHHHHHHHH-HTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCCHHHHHHH
T ss_conf 9489999999999-849999999999
No 2
>>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (P:82-149)
Probab=10.11 E-value=87 Score=10.99 Aligned_cols=14 Identities=0% Similarity=0.159 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 92479999975124
Q gi|254780571|r 1 MKCIKNYILRFLSR 14 (182)
Q Consensus 1 ~~~~~~~lrrf~rd 14 (182)
||.+|.+|++++.+
T Consensus 18 iR~lRr~Lr~lR~~ 31 (68)
T 1vq8_P 18 IRAQRTKLRELRDE 31 (68)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999874
No 3
>>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} (A:1-71,A:168-203)
Probab=9.39 E-value=92 Score=10.83 Aligned_cols=14 Identities=0% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780571|r 36 AVYEITMLYTLSKR 49 (182)
Q Consensus 36 ~~~e~~~~~~~~~~ 49 (182)
+.+|||++||.+.+
T Consensus 87 sLfDFgLyffHNa~ 100 (107)
T 3cux_A 87 SLVDFGLYFFHNAK 100 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 55329999983289
No 4
>>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3844637, BSGC structure funded by NIH, protein structure initiative, PSI; 2.00A {Mycoplasma genitalium} (A:)
Probab=9.16 E-value=52 Score=12.33 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 47999997512445548999999999999
Q gi|254780571|r 3 CIKNYILRFLSRENGVVAVEMAIILPILL 31 (182)
Q Consensus 3 ~~~~~lrrf~rd~~G~aaVEFAli~P~ll 31 (182)
+.++.-.++-|.||-.+.|||.+-...|+
T Consensus 4 tv~g~t~kltrtqrriaivefif~~lffl 32 (151)
T 1q8c_A 4 TVKGLTNKLTRTQRRIAVVEFIFSLLFFL 32 (151)
T ss_dssp --------CCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 66421235249999999999999988188
No 5
>>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} (A:1-128,A:358-381)
Probab=9.01 E-value=95 Score=10.74 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2479999975124455489999999
Q gi|254780571|r 2 KCIKNYILRFLSRENGVVAVEMAII 26 (182)
Q Consensus 2 ~~~~~~lrrf~rd~~G~aaVEFAli 26 (182)
+.+..+.+..+......++||+||+
T Consensus 90 ~i~~~l~~~~~~~~~A~aaid~Alw 114 (152)
T 3fcp_A 90 ALTARMNGAIKGNTFAKSAIETALL 114 (152)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 8777650456774278889877665
No 6
>>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} (A:1-129,A:360-383)
Probab=9.01 E-value=95 Score=10.74 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2479999975124455489999999
Q gi|254780571|r 2 KCIKNYILRFLSRENGVVAVEMAII 26 (182)
Q Consensus 2 ~~~~~~lrrf~rd~~G~aaVEFAli 26 (182)
+..+.+.+.++......++||+||.
T Consensus 91 ~i~~~l~~~~~~~~~A~saID~Alw 115 (153)
T 3i4k_A 91 GIXADLERVVARARYAKAAVDVAXH 115 (153)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999997652111789999999999
No 7
>>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} (C:1-84)
Probab=8.23 E-value=1e+02 Score=10.54 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=0.0
Q ss_pred EEECCCCCCCEE
Q ss_conf 997475347342
Q gi|254780571|r 167 YYYRQRLGDQIV 178 (182)
Q Consensus 167 ~~~rpR~~~~i~ 178 (182)
.|.|||.+..||
T Consensus 73 fYLrPr~ttlIP 84 (84)
T 3euh_C 73 FYLRPRSTTLIP 84 (84)
T ss_dssp EEEEECTTCSSC
T ss_pred EEECCCCCCCCC
T ss_conf 786465457543
No 8
>>3i6e_A Muconate cycloisomerase I; structural GENOMICS,NYSGXRC,TARGER 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A (A:1-129,A:363-385)
Probab=8.08 E-value=1e+02 Score=10.50 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2479999975124455489999999
Q gi|254780571|r 2 KCIKNYILRFLSRENGVVAVEMAII 26 (182)
Q Consensus 2 ~~~~~~lrrf~rd~~G~aaVEFAli 26 (182)
+.+..+.+..+.+....++||+||.
T Consensus 91 ~i~~~l~~~~~~~~~A~aAid~ALw 115 (152)
T 3i6e_A 91 AIMDEAARAVAHCTEAKAALDSALL 115 (152)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999998745665899999999999
No 9
>>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (P:81-176)
Probab=8.07 E-value=99 Score=10.65 Aligned_cols=16 Identities=0% Similarity=0.384 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCCC
Q ss_conf 9247999997512445
Q gi|254780571|r 1 MKCIKNYILRFLSREN 16 (182)
Q Consensus 1 ~~~~~~~lrrf~rd~~ 16 (182)
||.++.+|++++.+..
T Consensus 18 iR~lRr~Lr~~Re~~k 33 (96)
T 3jyw_P 18 LRVLRRLLAKYRDAGK 33 (96)
T ss_dssp HHHHHHHHSTTTTTTS
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999987489
No 10
>>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding protein; 1.95A {Thermus thermophilus HB8} (A:1-121,A:347-369)
Probab=7.75 E-value=1.1e+02 Score=10.41 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 79999975124455489999999
Q gi|254780571|r 4 IKNYILRFLSRENGVVAVEMAII 26 (182)
Q Consensus 4 ~~~~lrrf~rd~~G~aaVEFAli 26 (182)
+...+.+........++||+||.
T Consensus 86 i~~~l~~~~~~~~A~aaVD~ALw 108 (144)
T 2zc8_A 86 LREALAPFRGNPMAKAVLEMAFF 108 (144)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHCCCHHHH
T ss_conf 99875203688221211220233
Done!