Query gi|254780571|ref|YP_003064984.1| hypothetical protein CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 182
No_of_seqs 111 out of 492
Neff 8.9
Searched_HMMs 23785
Date Tue May 31 20:39:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780571.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zug_A Phage 434 CRO protein; 24.9 24 0.001 13.4 1.4 26 1-27 1-26 (71)
2 3l70_G Mitochondrial ubiquinol 8.1 73 0.0031 10.5 4.0 26 2-35 32-57 (81)
3 1nh1_A Avirulence B protein; h 8.1 74 0.0031 10.5 1.5 21 52-72 71-91 (330)
4 1pp9_G Ubiquinol-cytochrome C 7.1 82 0.0034 10.2 4.0 26 3-36 33-58 (81)
5 2k21_A Potassium voltage-gated 6.2 93 0.0039 9.9 2.3 31 13-43 45-75 (138)
6 1kf6_D Fumarate reductase 13 k 5.4 1.1E+02 0.0047 9.4 2.1 18 17-34 19-36 (119)
7 3jyw_P 60S ribosomal protein L 5.3 1.1E+02 0.0047 9.4 0.1 16 1-16 98-113 (176)
8 1nc8_A Nucleocapsid protein; H 5.3 1.1E+02 0.0047 9.4 0.6 7 176-182 6-12 (29)
9 1b35_A CRPV, protein (cricket 5.3 89 0.0037 10.0 -0.6 9 4-12 45-53 (260)
10 1etf_B REV peptide; complex (R 5.3 1.1E+02 0.0048 9.3 0.8 19 2-20 4-22 (26)
No 1
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.92 E-value=24 Score=13.45 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 924799999751244554899999999
Q gi|254780571|r 1 MKCIKNYILRFLSRENGVVAVEMAIIL 27 (182)
Q Consensus 1 ~~~~~~~lrrf~rd~~G~aaVEFAli~ 27 (182)
|+.+...+|++|. +.|...-|||-.+
T Consensus 1 M~~i~~rik~~r~-~~gltq~elA~~~ 26 (71)
T 1zug_A 1 MQTLSERLKKRRI-ALKMTQTELATKA 26 (71)
T ss_dssp CCSHHHHHHHHHH-HTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCCHHHHHHHC
T ss_conf 9489999999999-9399999997841
No 2
>3l70_G Mitochondrial ubiquinol-cytochrome C reductase ubiquinone-binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: PEE HEM JZV UQ CDL HEC BOG; 2.75A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G*
Probab=8.13 E-value=73 Score=10.51 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2479999975124455489999999999999999
Q gi|254780571|r 2 KCIKNYILRFLSRENGVVAVEMAIILPILLLIYM 35 (182)
Q Consensus 2 ~~~~~~lrrf~rd~~G~aaVEFAli~P~ll~ll~ 35 (182)
+.+-+.+||++. .+-.++|+|++..+
T Consensus 32 ~gipN~~RR~~~--------~~l~v~PPfv~~Y~ 57 (81)
T 3l70_G 32 DALPNVWRRFSS--------QVFKVAPPFLGAYL 57 (81)
T ss_dssp THHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHH--------HEEEEECHHHHHHH
T ss_conf 525189988565--------13388475999999
No 3
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=8.08 E-value=74 Score=10.50 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHH
Q ss_conf 999999999852888797888
Q gi|254780571|r 52 RFASHMGDMVAQETSINKQYL 72 (182)
Q Consensus 52 ~A~~~~ar~~~~~~~~~~~~~ 72 (182)
++.|+++--++.++..+=.++
T Consensus 71 n~sR~aG~~ia~G~i~sF~el 91 (330)
T 1nh1_A 71 NSIRSAGDEISRGGITSFEEL 91 (330)
T ss_dssp HHHHHHHHHHHTTSCCSHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHH
T ss_conf 999985132104775669999
No 4
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 1bcc_G* 2bcc_G* 3bcc_G* 1qcr_G*
Probab=7.11 E-value=82 Score=10.22 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4799999751244554899999999999999999
Q gi|254780571|r 3 CIKNYILRFLSRENGVVAVEMAIILPILLLIYMA 36 (182)
Q Consensus 3 ~~~~~lrrf~rd~~G~aaVEFAli~P~ll~ll~~ 36 (182)
.+-+.+||++. .+-.++|+|++..+.
T Consensus 33 gipN~~RR~~~--------~~l~v~PPfi~~Y~i 58 (81)
T 1pp9_G 33 GIPNVLRRTRA--------CILRVAPPFVAFYLV 58 (81)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--------HCEEEECHHHHHHHH
T ss_conf 25189998787--------412782759999999
No 5
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=6.18 E-value=93 Score=9.88 Aligned_cols=31 Identities=3% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2445548999999999999999999999999
Q gi|254780571|r 13 SRENGVVAVEMAIILPILLLIYMAVYEITML 43 (182)
Q Consensus 13 rd~~G~aaVEFAli~P~ll~ll~~~~e~~~~ 43 (182)
+..+|.-++.+.|++.-||.++.+.+-+++.
T Consensus 45 ~~~d~~~~~lYIL~vmgffgff~~gImlsyi 75 (138)
T 2k21_A 45 RSGDGKLEALYVLMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp CCTTCSSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999852267999999999999999999877
No 6
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D*
Probab=5.38 E-value=1.1e+02 Score=9.42 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 548999999999999999
Q gi|254780571|r 17 GVVAVEMAIILPILLLIY 34 (182)
Q Consensus 17 G~aaVEFAli~P~ll~ll 34 (182)
|+--.=+|++.|++++++
T Consensus 19 gAGG~~~Al~~PvlIll~ 36 (119)
T 1kf6_D 19 GAGGMWSAIIAPVMILLV 36 (119)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 466027999988999999
No 7
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=5.34 E-value=1.1e+02 Score=9.39 Aligned_cols=16 Identities=0% Similarity=0.384 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCCC
Q ss_conf 9247999997512445
Q gi|254780571|r 1 MKCIKNYILRFLSREN 16 (182)
Q Consensus 1 ~~~~~~~lrrf~rd~~ 16 (182)
||.+|.+|+++|.+..
T Consensus 98 iR~lRr~Lk~lRd~~k 113 (176)
T 3jyw_P 98 LRVLRRLLAKYRDAGK 113 (176)
T ss_dssp HHHHHHHHSTTTTTTS
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999887489
No 8
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=5.34 E-value=1.1e+02 Score=9.39 Aligned_cols=7 Identities=43% Similarity=1.146 Sum_probs=0.0
Q ss_pred CEECCCC
Q ss_conf 3425899
Q gi|254780571|r 176 QIVCRDC 182 (182)
Q Consensus 176 ~i~c~~c 182 (182)
.|.|.||
T Consensus 6 ~ikCfNC 12 (29)
T 1nc8_A 6 VIRCWNC 12 (29)
T ss_dssp CCBCTTT
T ss_pred EEEEECC
T ss_conf 5676527
No 9
>1b35_A CRPV, protein (cricket paralysis virus, VP1); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=5.29 E-value=89 Score=10.02 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q ss_conf 799999751
Q gi|254780571|r 4 IKNYILRFL 12 (182)
Q Consensus 4 ~~~~lrrf~ 12 (182)
+|.|||||+
T Consensus 45 fR~LlKRf~ 53 (260)
T 1b35_A 45 IRQLIKRFG 53 (260)
T ss_dssp HHHHTTSCE
T ss_pred HHHHHHHHH
T ss_conf 999998886
No 10
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=5.27 E-value=1.1e+02 Score=9.35 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCHHH
Q ss_conf 2479999975124455489
Q gi|254780571|r 2 KCIKNYILRFLSRENGVVA 20 (182)
Q Consensus 2 ~~~~~~lrrf~rd~~G~aa 20 (182)
+.-++.-||++..|+.+++
T Consensus 4 qarrnrrrrwrerqraaaa 22 (26)
T 1etf_B 4 QARRNRRRRWRERQRAAAA 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 8898899999999999886
Done!