RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780571|ref|YP_003064984.1| hypothetical protein
CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62]
         (182 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 89/215 (41%)

Query: 8   ILRFLSRENGVVAVE----MAIILPILLLIYMAVYEITMLYTLSKRLTRFASHMGDMVAQ 63
           IL +L   +     +    + I  P++ +I +A Y +T     +K L       G++   
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-----AKLL---GFTPGEL--- 263

Query: 64  ETSINKQYLQGFENFLRATMYPYRTPNHS--IIV--------TGYW---LDN-KQIVRKM 109
                + YL+G      AT        HS  ++         +  W     + ++ +  +
Sbjct: 264 -----RSYLKG------AT-------GHSQGLVTAVAIAETDS--WESFFVSVRKAITVL 303

Query: 110 WNW--------------SSSNVK--VER-EDIPA---SIKDAS-----TFIV-------- 136
           + +                S ++  +E  E +P+   SI + +      ++         
Sbjct: 304 F-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362

Query: 137 --RAEVS-IN-YRTLVFSKILPDSLKG-DIVLRKV 166
             + E+S +N  + LV S   P SL G ++ LRK 
Sbjct: 363 GKQVEISLVNGAKNLVVSG-PPQSLYGLNLTLRKA 396



 Score = 35.3 bits (81), Expect = 0.007
 Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 80/162 (49%)

Query: 35  MAVY-----------EITMLYT----LSKRLTRF-ASHMGDMVAQETSINKQYLQGFENF 78
           +A++           E+  LY     L   L +F A  + +++       K + QG  N 
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NI 215

Query: 79  LRATMYPYRTPNHSIIVTGYWLDNKQIVRKMWNWSSSNVKVEREDIPASIKDASTFIVRA 138
           L                   WL+N                    + P    D   +++  
Sbjct: 216 LE------------------WLEN------------------PSNTPDK--D---YLLSI 234

Query: 139 EVSINYRTLVFSKILPDSLKGDIVLRKVYYYRQRLGDQIVCR 180
            +S            P  L G  V++  +Y        +  +
Sbjct: 235 PIS-----------CP--LIG--VIQLAHYV-------VTAK 254



 Score = 28.4 bits (63), Expect = 0.99
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%)

Query: 143  NYRTLVFSKILPDSLKGDIVLRKV------YYYRQRLG 174
            NY  ++F  I+   LK + + +++      Y +R   G
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 35.0 bits (79), Expect = 0.009
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 7/32 (21%)

Query: 103 KQIVRKMWNWSSSNVKVERED-IPA-SIKDAS 132
           KQ ++K+     +++K+  +D  PA +IK A+
Sbjct: 19  KQALKKL----QASLKLYADDSAPALAIK-AT 45


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 28.0 bits (62), Expect = 1.5
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 11/51 (21%)

Query: 138 AEVSINYRT------LVFSKILPDSLKGDIVLRKVYYYRQRLGDQIVCRDC 182
              SI+ R       L      P+       +  V  + +  GD +VC  C
Sbjct: 3   TRESIDKRAGRRGPNLNIVLTCPECKVYPPKI--VERFSE--GD-VVCALC 48


>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
           aminoacyl-tRNA synthetase, ATP-binding,
           charcot-marie-tooth disease, disease mutation; HET: B4P;
           2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
           2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
          Length = 693

 Score = 25.9 bits (56), Expect = 5.9
 Identities = 3/25 (12%), Positives = 11/25 (44%)

Query: 4   IKNYILRFLSRENGVVAVEMAIILP 28
           I     +   +E  ++ ++  ++ P
Sbjct: 107 IIQTWRQHFIQEEQILEIDCTMLTP 131


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,574,532
Number of extensions: 66834
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 8
Length of query: 182
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 95
Effective length of database: 3,584,002
Effective search space: 340480190
Effective search space used: 340480190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)