Query gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 192
No_of_seqs 106 out of 485
Neff 8.8
Searched_HMMs 23785
Date Tue May 31 18:43:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780572.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k21_A Potassium voltage-gated 3.6 1.8E+02 0.0077 9.5 2.0 21 25-45 52-72 (138)
2 3cxn_A Urease accessory protei 3.4 1.9E+02 0.0081 9.4 4.2 42 29-70 180-225 (274)
3 1nh1_A Avirulence B protein; h 3.4 2E+02 0.0083 9.4 1.5 17 53-69 71-87 (330)
4 3mf2_A BLL0957 protein; aminoa 2.9 2.3E+02 0.0098 9.0 3.4 16 176-191 167-182 (346)
5 3bdn_A Lambda repressor; repre 2.5 2.8E+02 0.012 8.6 1.5 24 4-28 17-40 (236)
6 1q2h_A APS, adaptor protein wi 2.2 3.2E+02 0.014 8.3 1.1 7 19-25 17-23 (69)
7 3f5d_A Protein YDEA; unknow pr 2.1 3.4E+02 0.014 8.2 1.6 13 17-29 152-164 (206)
8 2k1k_A Ephrin type-A receptor 2.1 3.5E+02 0.015 8.1 4.0 23 26-48 13-35 (38)
9 3b5x_A Lipid A export ATP-bind 2.1 3.5E+02 0.015 8.1 6.3 42 3-54 14-55 (582)
10 1kbh_A ACTR, nuclear receptor 2.1 3.5E+02 0.015 8.1 3.0 30 3-32 7-38 (47)
No 1
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.62 E-value=1.8e+02 Score=9.54 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254780572|r 25 AILVMPYFMLVFAILEISLSF 45 (192)
Q Consensus 25 Alv~p~ll~l~~g~~E~g~~~ 45 (192)
+++-.++++.+||.|-+|.++
T Consensus 52 ~~lYIL~vmgffgff~~gIml 72 (138)
T 2k21_A 52 EALYVLMVLGFFGFFTLGIML 72 (138)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 267999999999999999999
No 2
>3cxn_A Urease accessory protein UREF; helical, nickel, chaperone; HET: MSE; 1.55A {Helicobacter pylori} PDB: 2wgl_A*
Probab=3.45 E-value=1.9e+02 Score=9.42 Aligned_cols=42 Identities=7% Similarity=0.031 Sum_probs=29.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999----99999999999999999999888741344577
Q gi|254780572|r 29 MPYFMLVFAI----LEISLSFTAGQLFESAAYDVARKIRTGEISSK 70 (192)
Q Consensus 29 p~ll~l~~g~----~E~g~~~~~~~~l~~A~~~aaR~~~tg~~~~~ 70 (192)
|+.+.++... .|-....|.+..+.+.+..+.|.+..|+...+
T Consensus 180 ~va~G~~a~~lgi~~~~al~~~lys~~~nlvsAAVRLipLGq~~gQ 225 (274)
T 3cxn_A 180 ATSYGVFAASLGIELKKALRHYLYAQTSNMVINCVKSVPLSQNDGQ 225 (274)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999099999999999999999999999984577879999
No 3
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=3.38 E-value=2e+02 Score=9.37 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999988874134457
Q gi|254780572|r 53 SAAYDVARKIRTGEISS 69 (192)
Q Consensus 53 ~A~~~aaR~~~tg~~~~ 69 (192)
++.+++.-.+.-|++++
T Consensus 71 n~sR~aG~~ia~G~i~s 87 (330)
T 1nh1_A 71 NSIRSAGDEISRGGITS 87 (330)
T ss_dssp HHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 99998513210477566
No 4
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
Probab=2.95 E-value=2.3e+02 Score=9.00 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=10.3
Q ss_pred CCCEEEEEEEEHCCCC
Q ss_conf 8828999985010158
Q gi|254780572|r 176 KGDFLLSSIVVFKNEP 191 (192)
Q Consensus 176 ~~~~~l~at~~frnEp 191 (192)
.....-..+.+||+||
T Consensus 167 lP~~~~~~~~~fR~E~ 182 (346)
T 3mf2_A 167 GGLRFDVAADCFRREP 182 (346)
T ss_dssp TCEEEEEEEEEECCCC
T ss_pred CCEEEEEECCEEECCC
T ss_conf 4879999747883789
No 5
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=2.52 E-value=2.8e+02 Score=8.60 Aligned_cols=24 Identities=13% Similarity=-0.133 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 5789888752023664599999999
Q gi|254780572|r 4 KLLQGIRRSILIREGAVAIEFAILV 28 (192)
Q Consensus 4 ~l~~~lrr~~~d~rG~aaVEFAlv~ 28 (192)
||.+.++ -+|+++|.+.-|||=.+
T Consensus 17 rLk~l~~-~~r~e~Glsq~elA~~~ 40 (236)
T 3bdn_A 17 RLKAIYE-KKKNELGLSQESVADKM 40 (236)
T ss_dssp HHHHHHH-HHTTTTTCCSHHHHHHH
T ss_pred HHHHHHH-HHHHHCCCCHHHHHHHH
T ss_conf 9999999-99998399999999997
No 6
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=2.24 E-value=3.2e+02 Score=8.28 Aligned_cols=7 Identities=57% Similarity=0.956 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 4599999
Q gi|254780572|r 19 AVAIEFA 25 (192)
Q Consensus 19 ~aaVEFA 25 (192)
+||+|||
T Consensus 17 aAA~dFA 23 (69)
T 1q2h_A 17 AAAVDFA 23 (69)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 7
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=2.15 E-value=3.4e+02 Score=8.18 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 6645999999999
Q gi|254780572|r 17 EGAVAIEFAILVM 29 (192)
Q Consensus 17 rG~aaVEFAlv~p 29 (192)
+|.+++|||+-+.
T Consensus 152 ~G~a~idfa~~il 164 (206)
T 3f5d_A 152 NGTAPIEFTNLIL 164 (206)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 9706999999999
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=2.12 E-value=3.5e+02 Score=8.14 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999
Q gi|254780572|r 26 ILVMPYFMLVFAILEISLSFTAG 48 (192)
Q Consensus 26 lv~p~ll~l~~g~~E~g~~~~~~ 48 (192)
+|+.+|=+|+-...-+|+.++.+
T Consensus 13 ivavifglll~~alllg~~~fr~ 35 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 08999999999999998884101
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=2.11 E-value=3.5e+02 Score=8.13 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3578988875202366459999999999999999999999999999999999
Q gi|254780572|r 3 KKLLQGIRRSILIREGAVAIEFAILVMPYFMLVFAILEISLSFTAGQLFESA 54 (192)
Q Consensus 3 ~~l~~~lrr~~~d~rG~aaVEFAlv~p~ll~l~~g~~E~g~~~~~~~~l~~A 54 (192)
|++++.+|++++ .+++.+++.++.+.+++......+..++.+
T Consensus 14 k~l~~~lk~~k~----------~l~l~~i~~~l~~~~~~~~p~l~~~~id~~ 55 (582)
T 3b5x_A 14 KRLWTYIRLYKA----------GLVVSTIALVINAAADTYMISLLKPLLDEG 55 (582)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999----------999999999999999999999999999987
No 10
>1kbh_A ACTR, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Homo sapiens} SCOP: a.153.1.1
Probab=2.11 E-value=3.5e+02 Score=8.12 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHC--CCCCHHHHHHHHHHHHHH
Q ss_conf 357898887520--236645999999999999
Q gi|254780572|r 3 KKLLQGIRRSIL--IREGAVAIEFAILVMPYF 32 (192)
Q Consensus 3 ~~l~~~lrr~~~--d~rG~aaVEFAlv~p~ll 32 (192)
+.|+..+..+.+ |..|..-+.=||-.|-+.
T Consensus 7 ~ALldQL~s~L~~~D~~~LeEiDrALGIp~lv 38 (47)
T 1kbh_A 7 RALLDQLHTLLSNTDATGLEEIDRALGIPELV 38 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH
T ss_conf 89999999998047647799999971828998
Done!