Query         gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 192
No_of_seqs    106 out of 485
Neff          8.8 
Searched_HMMs 13730
Date          Wed Jun  1 09:06:42 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780572.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1q8ca_ a.79.1.2 (A:) Hypothet   8.5      23  0.0017   12.8  -0.9   30   13-42      2-31  (140)
  2 d2hyda2 f.37.1.1 (A:1-323) Put   5.5      69  0.0051   10.4   4.5   13    1-13      1-13  (323)
  3 d2o8ra1 a.7.15.1 (A:4-112) Pol   2.6 1.6E+02   0.012    8.7   2.2   18   40-57      9-26  (109)
  4 d2dn3b1 a.1.1.2 (B:2-146) Hemo   2.5 1.6E+02   0.012    8.6   3.3   32    5-36     83-114 (145)
  5 d1kf6d_ f.21.2.2 (D:) Fumarate   2.2 1.9E+02   0.014    8.3   2.0   26   18-43     19-44  (119)
  6 d1kbha_ a.153.1.1 (A:) Nuclear   2.2   2E+02   0.014    8.2   3.0   30    3-32      7-38  (47)
  7 d1zx3a1 a.43.1.6 (A:10-95) Hyp   2.1   2E+02   0.015    8.1   1.1   10   19-28     45-54  (86)
  8 d1ppjg_ f.23.13.1 (G:) Ubiquin   2.1 2.1E+02   0.015    8.1   3.8   27    2-36     31-57  (75)
  9 d2gycf2 d.100.1.1 (F:1-58) Rib   2.0   1E+02  0.0073    9.6  -1.6   22  140-161    11-32  (58)
 10 d1r0ma2 d.54.1.1 (A:6-132) N-a   2.0 2.1E+02   0.016    8.0   0.4   23    4-26     87-109 (127)

No 1  
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=8.48  E-value=23  Score=12.81  Aligned_cols=30  Identities=7%  Similarity=0.171  Sum_probs=17.3

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             202366459999999999999999999999
Q gi|254780572|r   13 ILIREGAVAIEFAILVMPYFMLVFAILEIS   42 (192)
Q Consensus        13 ~~d~rG~aaVEFAlv~p~ll~l~~g~~E~g   42 (192)
                      .|.||-.|.|||.+....|+---.-.++..
T Consensus         2 trtqrriaivefif~~lfflpk~a~~iqa~   31 (140)
T d1q8ca_           2 TRTQRRIAVVEFIFSLLFFLPKEAEVIQAD   31 (140)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             622344778999999999674509999999


No 2  
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=5.48  E-value=69  Score=10.45  Aligned_cols=13  Identities=31%  Similarity=0.263  Sum_probs=8.1

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             9035789888752
Q gi|254780572|r    1 MRKKLLQGIRRSI   13 (192)
Q Consensus         1 m~~~l~~~lrr~~   13 (192)
                      |.||+++.+++++
T Consensus         1 mlKrl~~~~k~~k   13 (323)
T d2hyda2           1 MIKRYLQFVKPYK   13 (323)
T ss_dssp             CHHHHHHHHGGGH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9899999999999


No 3  
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.58  E-value=1.6e+02  Score=8.66  Aligned_cols=18  Identities=17%  Similarity=0.071  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999
Q gi|254780572|r   40 EISLSFTAGQLFESAAYD   57 (192)
Q Consensus        40 E~g~~~~~~~~l~~A~~~   57 (192)
                      |++|+-+.+++|+.|.+.
T Consensus         9 elSwl~Fn~RVL~~a~d~   26 (109)
T d2o8ra1           9 DMSWLSFNERVLMEAADR   26 (109)
T ss_dssp             HHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             999999989999987088


No 4  
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.49  E-value=1.6e+02  Score=8.56  Aligned_cols=32  Identities=6%  Similarity=-0.066  Sum_probs=14.4

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             78988875202366459999999999999999
Q gi|254780572|r    5 LLQGIRRSILIREGAVAIEFAILVMPYFMLVF   36 (192)
Q Consensus         5 l~~~lrr~~~d~rG~aaVEFAlv~p~ll~l~~   36 (192)
                      +...++++.++.+|+..-.|..+...|+..+-
T Consensus        83 l~~~L~~l~~~h~gv~~~~f~~~~~~ll~~l~  114 (145)
T d2dn3b1          83 TFATLSELHCDKLHVDPENFRLLGNVLVCVLA  114 (145)
T ss_dssp             HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999996654048991589999999999999


No 5  
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=2.23  E-value=1.9e+02  Score=8.27  Aligned_cols=26  Identities=31%  Similarity=0.324  Sum_probs=17.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64599999999999999999999999
Q gi|254780572|r   18 GAVAIEFAILVMPYFMLVFAILEISL   43 (192)
Q Consensus        18 G~aaVEFAlv~p~ll~l~~g~~E~g~   43 (192)
                      |+--.=+|+++|++++++.-.+-+|.
T Consensus        19 gAGGm~~A~~~Pvlill~giLlPlG~   44 (119)
T d1kf6d_          19 GAGGMWSAIIAPVMILLVGILLPLGL   44 (119)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTTGGGTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             47720589998899999999996126


No 6  
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.16  E-value=2e+02  Score=8.19  Aligned_cols=30  Identities=17%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHC--CCCCHHHHHHHHHHHHHH
Q ss_conf             357898887520--236645999999999999
Q gi|254780572|r    3 KKLLQGIRRSIL--IREGAVAIEFAILVMPYF   32 (192)
Q Consensus         3 ~~l~~~lrr~~~--d~rG~aaVEFAlv~p~ll   32 (192)
                      +.|+..+..+.+  |..|..-+.=||-.|-+.
T Consensus         7 ~aLldQL~s~L~~~D~~~LeEiDrALGIp~lv   38 (47)
T d1kbha_           7 RALLDQLHTLLSNTDATGLEEIDRALGIPELV   38 (47)
T ss_dssp             HHHHHHHHHHTTSSCCTTHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH
T ss_conf             89999999998047647799999971828998


No 7  
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241 {Nitrosomonas europaea [TaxId: 915]}
Probab=2.11  E-value=2e+02  Score=8.13  Aligned_cols=10  Identities=50%  Similarity=0.786  Sum_probs=0.0

Q ss_pred             HHHHHHHHHH
Q ss_conf             4599999999
Q gi|254780572|r   19 AVAIEFAILV   28 (192)
Q Consensus        19 ~aaVEFAlv~   28 (192)
                      +-||||-+++
T Consensus        45 anavefnivl   54 (86)
T d1zx3a1          45 ANAVEFNIVL   54 (86)
T ss_dssp             HHHHHHHTHH
T ss_pred             HHHHHHEEEH
T ss_conf             6047620004


No 8  
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.07  E-value=2.1e+02  Score=8.08  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             03578988875202366459999999999999999
Q gi|254780572|r    2 RKKLLQGIRRSILIREGAVAIEFAILVMPYFMLVF   36 (192)
Q Consensus         2 ~~~l~~~lrr~~~d~rG~aaVEFAlv~p~ll~l~~   36 (192)
                      .+-+.+.+||++.        ++-.++|+|++..+
T Consensus        31 ~~gi~N~~RR~~~--------~~l~v~PPfi~~Y~   57 (75)
T d1ppjg_          31 SKGIPNVLRRTRA--------CILRVAPPFVAFYL   57 (75)
T ss_dssp             TTHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHH--------HCEEECCHHHHHHH
T ss_conf             7625189998687--------41377077999999


No 9  
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=2.03  E-value=1e+02  Score=9.64  Aligned_cols=22  Identities=14%  Similarity=0.132  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEEEEEEECCCHH
Q ss_conf             6899971899999998010000
Q gi|254780572|r  140 HPGGPSTYNVLRAYYHWPLFTD  161 (192)
Q Consensus       140 ~~g~~~~iv~v~v~y~~~~~~p  161 (192)
                      ..|..||++.|.--|..-.+.|
T Consensus        11 ~lG~~Gdvv~Vk~GyaRNyLiP   32 (58)
T d2gycf2          11 NLGSLGDQVNVKAGYARNFLVP   32 (58)
T ss_dssp             SCCCSCEEEECCTTTTTTTTTT
T ss_pred             CCCCCCCEEEECCCHHHHHHCC
T ss_conf             3798898999866014877155


No 10 
>d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.01  E-value=2.1e+02  Score=8.00  Aligned_cols=23  Identities=13%  Similarity=0.042  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             57898887520236645999999
Q gi|254780572|r    4 KLLQGIRRSILIREGAVAIEFAI   26 (192)
Q Consensus         4 ~l~~~lrr~~~d~rG~aaVEFAl   26 (192)
                      .+...++++....-..+|||.|+
T Consensus        87 ~~~~~~~~~~~~~~a~aaid~Al  109 (127)
T d1r0ma2          87 AVSDALGSYRGNRMARAMVEMAA  109 (127)
T ss_dssp             HHHHTTTTSCSCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             87512210477547999999999


Done!