Query gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 192 No_of_seqs 106 out of 485 Neff 8.8 Searched_HMMs 13730 Date Wed Jun 1 09:06:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780572.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1q8ca_ a.79.1.2 (A:) Hypothet 8.5 23 0.0017 12.8 -0.9 30 13-42 2-31 (140) 2 d2hyda2 f.37.1.1 (A:1-323) Put 5.5 69 0.0051 10.4 4.5 13 1-13 1-13 (323) 3 d2o8ra1 a.7.15.1 (A:4-112) Pol 2.6 1.6E+02 0.012 8.7 2.2 18 40-57 9-26 (109) 4 d2dn3b1 a.1.1.2 (B:2-146) Hemo 2.5 1.6E+02 0.012 8.6 3.3 32 5-36 83-114 (145) 5 d1kf6d_ f.21.2.2 (D:) Fumarate 2.2 1.9E+02 0.014 8.3 2.0 26 18-43 19-44 (119) 6 d1kbha_ a.153.1.1 (A:) Nuclear 2.2 2E+02 0.014 8.2 3.0 30 3-32 7-38 (47) 7 d1zx3a1 a.43.1.6 (A:10-95) Hyp 2.1 2E+02 0.015 8.1 1.1 10 19-28 45-54 (86) 8 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.1 2.1E+02 0.015 8.1 3.8 27 2-36 31-57 (75) 9 d2gycf2 d.100.1.1 (F:1-58) Rib 2.0 1E+02 0.0073 9.6 -1.6 22 140-161 11-32 (58) 10 d1r0ma2 d.54.1.1 (A:6-132) N-a 2.0 2.1E+02 0.016 8.0 0.4 23 4-26 87-109 (127) No 1 >d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]} Probab=8.48 E-value=23 Score=12.81 Aligned_cols=30 Identities=7% Similarity=0.171 Sum_probs=17.3 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 202366459999999999999999999999 Q gi|254780572|r 13 ILIREGAVAIEFAILVMPYFMLVFAILEIS 42 (192) Q Consensus 13 ~~d~rG~aaVEFAlv~p~ll~l~~g~~E~g 42 (192) .|.||-.|.|||.+....|+---.-.++.. T Consensus 2 trtqrriaivefif~~lfflpk~a~~iqa~ 31 (140) T d1q8ca_ 2 TRTQRRIAVVEFIFSLLFFLPKEAEVIQAD 31 (140) T ss_dssp CHHHHHHHHHHHHHHHGGGCCCCHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 622344778999999999674509999999 No 2 >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Probab=5.48 E-value=69 Score=10.45 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=8.1 Q ss_pred CCHHHHHHHHHHH Q ss_conf 9035789888752 Q gi|254780572|r 1 MRKKLLQGIRRSI 13 (192) Q Consensus 1 m~~~l~~~lrr~~ 13 (192) |.||+++.+++++ T Consensus 1 mlKrl~~~~k~~k 13 (323) T d2hyda2 1 MIKRYLQFVKPYK 13 (323) T ss_dssp CHHHHHHHHGGGH T ss_pred CHHHHHHHHHHHH T ss_conf 9899999999999 No 3 >d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Probab=2.58 E-value=1.6e+02 Score=8.66 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999 Q gi|254780572|r 40 EISLSFTAGQLFESAAYD 57 (192) Q Consensus 40 E~g~~~~~~~~l~~A~~~ 57 (192) |++|+-+.+++|+.|.+. T Consensus 9 elSwl~Fn~RVL~~a~d~ 26 (109) T d2o8ra1 9 DMSWLSFNERVLMEAADR 26 (109) T ss_dssp HHHHHHHHHHHHHHHHCT T ss_pred HHHHHHHHHHHHHHHCCC T ss_conf 999999989999987088 No 4 >d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]} Probab=2.49 E-value=1.6e+02 Score=8.56 Aligned_cols=32 Identities=6% Similarity=-0.066 Sum_probs=14.4 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 78988875202366459999999999999999 Q gi|254780572|r 5 LLQGIRRSILIREGAVAIEFAILVMPYFMLVF 36 (192) Q Consensus 5 l~~~lrr~~~d~rG~aaVEFAlv~p~ll~l~~ 36 (192) +...++++.++.+|+..-.|..+...|+..+- T Consensus 83 l~~~L~~l~~~h~gv~~~~f~~~~~~ll~~l~ 114 (145) T d2dn3b1 83 TFATLSELHCDKLHVDPENFRLLGNVLVCVLA 114 (145) T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999996654048991589999999999999 No 5 >d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]} Probab=2.23 E-value=1.9e+02 Score=8.27 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=17.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 64599999999999999999999999 Q gi|254780572|r 18 GAVAIEFAILVMPYFMLVFAILEISL 43 (192) Q Consensus 18 G~aaVEFAlv~p~ll~l~~g~~E~g~ 43 (192) |+--.=+|+++|++++++.-.+-+|. T Consensus 19 gAGGm~~A~~~Pvlill~giLlPlG~ 44 (119) T d1kf6d_ 19 GAGGMWSAIIAPVMILLVGILLPLGL 44 (119) T ss_dssp HHHHHHHHHTHHHHHHHHHTTGGGTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 47720589998899999999996126 No 6 >d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]} Probab=2.16 E-value=2e+02 Score=8.19 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHC--CCCCHHHHHHHHHHHHHH Q ss_conf 357898887520--236645999999999999 Q gi|254780572|r 3 KKLLQGIRRSIL--IREGAVAIEFAILVMPYF 32 (192) Q Consensus 3 ~~l~~~lrr~~~--d~rG~aaVEFAlv~p~ll 32 (192) +.|+..+..+.+ |..|..-+.=||-.|-+. T Consensus 7 ~aLldQL~s~L~~~D~~~LeEiDrALGIp~lv 38 (47) T d1kbha_ 7 RALLDQLHTLLSNTDATGLEEIDRALGIPELV 38 (47) T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHTTHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH T ss_conf 89999999998047647799999971828998 No 7 >d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241 {Nitrosomonas europaea [TaxId: 915]} Probab=2.11 E-value=2e+02 Score=8.13 Aligned_cols=10 Identities=50% Similarity=0.786 Sum_probs=0.0 Q ss_pred HHHHHHHHHH Q ss_conf 4599999999 Q gi|254780572|r 19 AVAIEFAILV 28 (192) Q Consensus 19 ~aaVEFAlv~ 28 (192) +-||||-+++ T Consensus 45 anavefnivl 54 (86) T d1zx3a1 45 ANAVEFNIVL 54 (86) T ss_dssp HHHHHHHTHH T ss_pred HHHHHHEEEH T ss_conf 6047620004 No 8 >d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Probab=2.07 E-value=2.1e+02 Score=8.08 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 03578988875202366459999999999999999 Q gi|254780572|r 2 RKKLLQGIRRSILIREGAVAIEFAILVMPYFMLVF 36 (192) Q Consensus 2 ~~~l~~~lrr~~~d~rG~aaVEFAlv~p~ll~l~~ 36 (192) .+-+.+.+||++. ++-.++|+|++..+ T Consensus 31 ~~gi~N~~RR~~~--------~~l~v~PPfi~~Y~ 57 (75) T d1ppjg_ 31 SKGIPNVLRRTRA--------CILRVAPPFVAFYL 57 (75) T ss_dssp TTHHHHHHHHHHH--------HHHHHHHHHHHHHH T ss_pred HHCCCHHHHHHHH--------HCEEECCHHHHHHH T ss_conf 7625189998687--------41377077999999 No 9 >d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]} Probab=2.03 E-value=1e+02 Score=9.64 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=0.0 Q ss_pred CCCCCCEEEEEEEEEEECCCHH Q ss_conf 6899971899999998010000 Q gi|254780572|r 140 HPGGPSTYNVLRAYYHWPLFTD 161 (192) Q Consensus 140 ~~g~~~~iv~v~v~y~~~~~~p 161 (192) ..|..||++.|.--|..-.+.| T Consensus 11 ~lG~~Gdvv~Vk~GyaRNyLiP 32 (58) T d2gycf2 11 NLGSLGDQVNVKAGYARNFLVP 32 (58) T ss_dssp SCCCSCEEEECCTTTTTTTTTT T ss_pred CCCCCCCEEEECCCHHHHHHCC T ss_conf 3798898999866014877155 No 10 >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Probab=2.01 E-value=2.1e+02 Score=8.00 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 57898887520236645999999 Q gi|254780572|r 4 KLLQGIRRSILIREGAVAIEFAI 26 (192) Q Consensus 4 ~l~~~lrr~~~d~rG~aaVEFAl 26 (192) .+...++++....-..+|||.|+ T Consensus 87 ~~~~~~~~~~~~~~a~aaid~Al 109 (127) T d1r0ma2 87 AVSDALGSYRGNRMARAMVEMAA 109 (127) T ss_dssp HHHHTTTTSCSCHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHHH T ss_conf 87512210477547999999999 Done!