RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780572|ref|YP_003064985.1| hypothetical protein
CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>gnl|CDD|34568 COG4961, TadG, Flp pilus assembly protein TadG [Intracellular
           trafficking and secretion].
          Length = 185

 Score = 71.3 bits (174), Expect = 2e-13
 Identities = 37/172 (21%), Positives = 59/172 (34%), Gaps = 19/172 (11%)

Query: 1   MRKKLLQGIRRSILIREGAVAIEFAILVMPYFMLVFAILEISLSFTAGQLFESAAYDVAR 60
             + LL+  RR    R GA A+EFA++  P  +LVF I+E  ++F A Q  ++AA   AR
Sbjct: 7   GLRGLLRRFRRD---RRGAAAVEFALVAPPLLLLVFGIVEFGIAFLAKQSLQNAADAAAR 63

Query: 61  KIRTGEISSKNTHSL-TEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQIKSLQEITET 119
               G  +              F N +                       ++S      T
Sbjct: 64  AAARGLTTDAADLDTIQAAATAFLNAIAPANAFLT---------------VQSNTPSRGT 108

Query: 120 VPRKDKSDSSSEIDDRNFSFHPGGPSTYNVLRAYYHWPLFTDLMRQYISSVK 171
           V        ++  D   F+       + N+ R      +  DL     S  +
Sbjct: 109 VTVTANVADATLFDTSQFTVTSAVTVSINLARGLVLVAVVPDLTGPGTSGSR 160


>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
           dehydrogenase  AldA-like.  The Mycobacterium
           tuberculosis NAD+-dependent, aldehyde dehydrogenase  PDB
           structure,  3B4W, and the Mycobacterium tuberculosis
           H37Rv aldehyde dehydrogenase  AldA (locus Rv0768)
           sequence, as well as the Rhodococcus rhodochrous ALDH
           involved in haloalkane catabolism, and other similar
           sequences, are included in this CD.
          Length = 471

 Score = 27.9 bits (63), Expect = 1.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 52  ESAAYDVARKIRTGEIS 68
                 VAR+IRTG + 
Sbjct: 415 VERGLAVARRIRTGTVG 431


>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
           dehydrogenase-like and related proteins.  The
           6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
           ruber SC1 which converts 6-oxolauric acid to
           dodecanedioic acid; and the aldehyde dehydrogenase
           (locus SSP0762) from Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305 and also, the Mycobacterium
           tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
           and other similar sequences, are included in this CD.
          Length = 459

 Score = 27.2 bits (61), Expect = 3.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 54  AAYDVARKIRTGEIS 68
            AY VAR+IRTG + 
Sbjct: 404 RAYRVARRIRTGSVG 418


>gnl|CDD|34850 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal
           transduction mechanisms].
          Length = 612

 Score = 26.6 bits (58), Expect = 4.3
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 137 FSFHPGGPSTYNVLRAYYHW-PLFTDLMRQYISSVKHPGKKGDFLLSS 183
           FS     P  +  LRA          L+ +YI    + GK G F L +
Sbjct: 336 FSCKDYFPEVFRELRALCGCDEALVSLLSRYILWESNGGKSGSFFLFT 383


>gnl|CDD|37146 KOG1935, KOG1935, KOG1935, Membrane protein Patched/PTCH [Signal
           transduction mechanisms].
          Length = 1143

 Score = 25.7 bits (56), Expect = 7.5
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 115 EITETVPRKDKSDSSSEIDDRNFSFHPGGPSTYNVLRAYYHWPLFTDLMRQY---ISSVK 171
           E+T+ VP      +     D+ FSF+P     + V +  + +P    L+  Y     S K
Sbjct: 674 ELTDVVPEHTAEAAFLRAQDKYFSFYP----MFAVTQGPFDYPHQQQLLDDYHQSFGSSK 729

Query: 172 H 172
           +
Sbjct: 730 Y 730


>gnl|CDD|145098 pfam01763, Herpes_UL6, Herpesvirus UL6 like.  This family consists
           of various proteins from the herpesviridae that are
           similar to herpes simplex virus type I UL6 virion
           protein. UL6 is essential for cleavage and packaging of
           the viral genome.
          Length = 551

 Score = 25.7 bits (57), Expect = 8.9
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 103 LYLDVKQIKSLQEITETVPRKDKSDSSSEIDDRNFSFHPGGP 144
           L +++ ++K +  IT+ V      D S  I D+N  F    P
Sbjct: 296 LLINLSEMKHVGGITDVV-ESFLQDVSPNIVDQNKLFDTSQP 336


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,270,616
Number of extensions: 113350
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 12
Length of query: 192
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 103
Effective length of database: 4,340,536
Effective search space: 447075208
Effective search space used: 447075208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.3 bits)