RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780572|ref|YP_003064985.1| hypothetical protein
CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>gnl|CDD|149078 pfam07811, TadE, TadE-like protein.  The members of this family
          are similar to a region of the protein product of the
          bacterial tadE locus. In various bacterial species, the
          tad locus is closely linked to flp-like genes, which
          encode proteins required for the production of pili
          involved in adherence to surfaces. It is thought that
          the tad loci encode proteins that act to assemble or
          export an Flp pilus in various bacteria. All tad loci
          but TadA have putative transmembrane regions, and in
          fact the region in question is this family has a high
          proportion of hydrophobic amino acid residues.
          Length = 43

 Score = 52.0 bits (126), Expect = 9e-08
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 18 GAVAIEFAILVMPYFMLVFAILEISLSFTAGQLFESAAYDVAR 60
          GA A+EFA+++    +L+F I+E+   F A Q+ ++AA + AR
Sbjct: 1  GAAAVEFALVLPVLLLLLFGIVELGRLFYARQVLQNAAREAAR 43


>gnl|CDD|183432 PRK12316, PRK12316, peptide synthase; Provisional.
          Length = 5163

 Score = 28.4 bits (63), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 8/42 (19%)

Query: 150  LRAYYHWPLFTDLMRQYISSVKHPGKKGDFLLSSIVVFKNEP 191
            LR + H PL+ ++ R         G+ G+ L  S++VF+N P
Sbjct: 4413 LREHEHTPLY-EIQRW-------AGQGGEALFDSLLVFENYP 4446



 Score = 28.4 bits (63), Expect = 1.3
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 23/98 (23%)

Query: 98   GRPYDLYLDVKQ----IKSLQEITETVPRKDKSDSSSEIDDRNFSFHPGGPSTYNVLRAY 153
            GRP +L    +Q    I +L  I    P +  +D   E+   N +           LR +
Sbjct: 1820 GRPAELPGIEQQIGLFINTLPVIAAPRPDQSVADWLQEVQALNLA-----------LREH 1868

Query: 154  YHWPLFTDLMRQYISSVKHPGKKGDFLLSSIVVFKNEP 191
             H PL+ D+ R         G+ G+ L  S++VF+N P
Sbjct: 1869 EHTPLY-DIQRW-------AGQGGEALFDSLLVFENYP 1898


>gnl|CDD|165257 PHA02947, PHA02947, S-S bond formation pathway protein;
           Provisional.
          Length = 215

 Score = 27.8 bits (62), Expect = 2.0
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 16/71 (22%)

Query: 62  IRTGEISSKNTHSLTEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQIKSLQEITETVP 121
           I  GEI         +F+R  C  LR++  C  N   +     L    IK+ +E+  T+P
Sbjct: 35  IHIGEIKG-------QFKR--CK-LRIINKCLNN---KRLSFTL---LIKTFKEVISTLP 78

Query: 122 RKDKSDSSSEI 132
            K++ + ++EI
Sbjct: 79  EKERRELANEI 89


>gnl|CDD|171521 PRK12467, PRK12467, peptide synthase; Provisional.
          Length = 3956

 Score = 26.7 bits (59), Expect = 4.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 8/42 (19%)

Query: 150  LRAYYHWPLFTDLMRQYISSVKHPGKKGDFLLSSIVVFKNEP 191
            LR + H PL  D+ R         G+ G+ L  SI+VF+N P
Sbjct: 2957 LREFEHTPLA-DIQRW-------AGQGGEALFDSILVFENYP 2990


>gnl|CDD|147888 pfam05975, EcsB, Bacterial ABC transporter protein EcsB.  This
           family consists of several bacterial ABC transporter
           proteins which are homologous to the EcsB protein of
           Bacillus subtilis. EcsB is thought to encode a
           hydrophobic protein with six membrane-spanning helices
           in a pattern found in other hydrophobic components of
           ABC transporters.
          Length = 385

 Score = 25.7 bits (57), Expect = 7.9
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 1   MRKKLLQGIRRSILIREGAVAIEFAILVMPYFMLVF 36
           M+K L + IR S++++     +  AIL++P  + + 
Sbjct: 93  MKKYLKKAIRYSLILQLILQVL-LAILLLPLLLKIL 127


>gnl|CDD|184451 PRK14013, PRK14013, hypothetical protein; Provisional.
          Length = 338

 Score = 25.5 bits (57), Expect = 8.3
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 12 SILIREGAVAIEFAILVMPYFMLVF--AILEISLSF 45
          S ++    + +   +  +    +V   A+LEISLSF
Sbjct: 9  SFIVTVIGLVLAAWLGGLSALFIVAILAVLEISLSF 44


>gnl|CDD|180017 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
          Length = 562

 Score = 25.5 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 8/34 (23%)

Query: 18  GAVAIEFAILVM----P----YFMLVFAILEISL 43
           GAV I  A   M    P     F +VF ++ +SL
Sbjct: 343 GAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSL 376


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,068,317
Number of extensions: 186505
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 19
Length of query: 192
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,092,969
Effective search space: 425668776
Effective search space used: 425668776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)