HHsearch alignment for GI: 254780573 and conserved domain: COG0008
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
Probab=99.04 E-value=1.6e-08 Score=81.32 Aligned_cols=235 Identities=19% Similarity=0.286 Sum_probs=137.4
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 96167888844411127999999999999970799845799605523388899998708986448848999999999999
Q gi|254780573|r 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV 108 (461)
Q Consensus 29 Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~ 108 (461)
T Consensus 12 tRFAPsPtG~LHiG~artAl~n~~~Ar~---~~G----~fiLRiEDTD~---~R~----------------~~e~~~~I~ 65 (472)
T COG0008 12 TRFAPSPTGYLHIGHARTALLNYLYARK---YGG----KFILRIEDTDP---ERE----------------TPEAEDAIL 65 (472)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCC----------------CHHHHHHHH
T ss_conf 9779599985426889999997999998---399----79999647998---878----------------878999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC---HHC----------C-CCCCC-CCCCH-HH
Q ss_conf 987762685410001235677778999998741143201289287522---002----------4-54322-46754-66
Q gi|254780573|r 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSI----------P-NYGSF-SRRKI-DE 172 (461)
Q Consensus 109 ~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv---~~~----------~-~YG~L-s~~~~-~~ 172 (461)
T Consensus 66 ~~L~WLGl~wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~c~----ct~eele~~R~~~~~~~~~P~~y~r~~~~L~~~~~ 141 (472)
T COG0008 66 EDLEWLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCY----CTPEELEEMRELRGALGEPPPSYDRDERNLTLFEK 141 (472)
T ss_pred HHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHH
T ss_conf 99986688889761436423999999999999879968866----89899999999886258899999923543546677
Q ss_pred HHH-HH------HCCCCCCCCCC--CCEEEEECCCCCCCEEEC-CCC------CCCCCCCCHHHHHHHHHCCCCEEEEEE
Q ss_conf 664-32------10222210123--512666337766631414-677------667643320477778752984148741
Q gi|254780573|r 173 QKM-GT------RVPEKYHKKNP--ADFILWKRSTPMEPGWES-PWG------RGRPGWHIECSAMSSHYLGKVFDIHGG 236 (461)
Q Consensus 173 ~~~-g~------r~~~~~~K~~p--~DFaLWK~~~~~e~~w~s-pwG------~GRPGWHiECsam~~~~lg~~~DIH~G 236 (461)
T Consensus 142 ~~~~~~~~~~~iR~k~~~~~~~~~~~D~v~------g~i~~~~~~~~dv~~r~dg~ptY~f-avvvDD~~mgITH--viR 212 (472)
T COG0008 142 MADLGEGGPAVVRLKIPMAHPGPVFRDLVR------GRIVFAPKHPDFVILRYDGYPTYNF-AVVVDDHLMGITH--VLR 212 (472)
T ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCEE------EEEECCCCCCCCEEECCCCCCCCCE-EEEECHHHCCCCE--EEE
T ss_conf 763046888079994777778984120423------3674476687560424777745430-0261032168863--773
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEE-EECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 3566668751366888864087530121003432576-4202233233214089985025334557779999999842
Q gi|254780573|r 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 (461)
Q Consensus 237 G~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i-~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLs 313 (461)
T Consensus 213 G~d~~~-nt~~q~~l~~~lg~-~~--P~~~H~~li~~~~g~kLSKr~~-~~~~~~~~~------~G~~~~al~~~~al 279 (472)
T COG0008 213 GEDHLD-NTPRQIWLYEALGW-PP--PVYAHLPLLLNEDGKKLSKRKG-AVSIGEYRV------EGWLPPALPNLLAL 279 (472)
T ss_pred CHHHCC-CCHHHHHHHHHCCC-CC--CCEEEEEEEECCCCCEECCCCC-CCCCCHHHH------CCCCCHHHHHHHHH
T ss_conf 444204-78999999997399-99--8279751046688783047667-665302555------18893889999998