HHsearch alignment for GI: 254780573 and conserved domain: COG0180
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=96.79 E-value=0.02 Score=37.70 Aligned_cols=192 Identities=22% Similarity=0.154 Sum_probs=101.9
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 616788884441112799999999999997079-9845799605523388899998708986448848999999999999
Q gi|254780573|r 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG-EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV 108 (461)
Q Consensus 30 ~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~-~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~ 108 (461)
T Consensus 9 lSG~~PSG~lHLGny~ga~---~~~v~~q-~~~~~--~--f~~IaDlha-~t~~----------~~~~~~~l~~~~~e~~ 69 (314)
T COG0180 9 LSGIQPSGKLHLGNYLGAI---RNWVLLQ-EEYYE--C--FFFIADLHA-ITVR----------QDPTEEDLRQATREVA 69 (314)
T ss_pred EECCCCCCCCCHHHHHHHH---HHHHHHH-CCCCC--E--EEEEECHHH-HHCC----------CCCHHHHHHHHHHHHH
T ss_conf 7567889975215769999---9999985-35575--4--999962777-5548----------8876999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 98776268541000123567777899999874114320128928752200245432246754666643210222210123
Q gi|254780573|r 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188 (461)
Q Consensus 109 ~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p 188 (461)
T Consensus 70 a~~LA~GiDP~k~~if~QS~v~e~~eLa~~l~-----------------~~~~~gel~r~~--------~fKdk~~~~~- 123 (314)
T COG0180 70 ADYLAVGLDPEKSTIFLQSEVPEHAELAWLLS-----------------CVTNFGELERMT--------QFKDKSAKKG- 123 (314)
T ss_pred HHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH-----------------CCCCHHHHHHHC--------CCCHHHHCCC-
T ss_conf 99987046856027998068667999999998-----------------617599998523--------7643332343-
Q ss_pred CCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCH--HHHHHHHHHC----CCCCCH
Q ss_conf 5126663377666314146776676433204777787529841487413566668751--3668888640----875301
Q gi|254780573|r 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE--NEIAQSCCAD----RIEKTA 262 (461)
Q Consensus 189 ~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHE--NEiAQs~a~~----~~~~~a 262 (461)
T Consensus 124 --~----~~~~Gl~~Y--------P------vlqAADILl~~a~~VPVG~DQ~-qHleLtRDiA~rfn~~y~~~f~~P~~ 182 (314)
T COG0180 124 --E----SIPIGLLTY--------P------VLQAADILLYQATLVPVGEDQD-QHLELTRDIARRFNHLYGEVFPLPEA 182 (314)
T ss_pred --C----CCCCCCHHC--------C------HHHHHHHHHCCCCEECCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf --5----664102105--------4------9988876502687510488853-99999999999987446675378600
Q ss_pred HHEECC--CEEEEEE-CCCCCCCCC-CCCHH
Q ss_conf 210034--3257642-022332332-14089
Q gi|254780573|r 263 NIWIHN--GFLNLEG-RKMSKSNGN-FITIN 289 (461)
Q Consensus 263 ~yWlH~--G~l~i~g-eKMSKSlGN-~iti~ 289 (461)
T Consensus 183 --~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 183 --LISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf --14477746478999866666999824504