HHsearch alignment for GI: 254780573 and conserved domain: COG0215
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1299.98 Aligned_cols=436 Identities=48% Similarity=0.822 Sum_probs=404.5
Q ss_pred CCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 74189888982622330479847999616788884441112799999999999997079984579960552338889999
Q gi|254780573|r 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 (461)
Q Consensus 4 ~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a 83 (461)
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~--V~yV~NiTDIDDKIi~rA 78 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK--VTYVRNITDIDDKIINRA 78 (464)
T ss_pred CCEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCE--EEEEECCCCCCHHHHHHH
T ss_conf 918985476540116578999168996188257764456676520299999999982970--799964666638999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHCCCC
Q ss_conf 87089864488489999999999999877626854100012356777789999987411432012-89287522002454
Q gi|254780573|r 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNY 162 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~-~g~VyFdv~~~~~Y 162 (461)
T Consensus 79 ~~~g~~------~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv~~f~~Y 152 (464)
T COG0215 79 REEGLS------IREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDY 152 (464)
T ss_pred HHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHHHH
T ss_conf 982999------99999999999999999829999865574764799999999999977965884698289952430317
Q ss_pred CCCCCC-CHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 322467-5466664321022221012351266633776663141467766764332047777875298414874135666
Q gi|254780573|r 163 GSFSRR-KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 (461)
Q Consensus 163 G~Ls~~-~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~ 241 (461)
T Consensus 153 G~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLi 232 (464)
T COG0215 153 GKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLI 232 (464)
T ss_pred HHHCCCCCHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 86528987667751354566545588001124425899998877998899994468899999987089751246850255
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 68751366888864087530121003432576420223323321408998502533455777999999984256643211
Q gi|254780573|r 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 (461)
Q Consensus 242 FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLd 321 (461)
T Consensus 233 FPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l-------~~~~p~~lR~~lls~HYR~pl~ 305 (464)
T COG0215 233 FPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLL-------KKYDPEVLRLFLLSSHYRSPLD 305 (464)
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCEEEHHHHH-------HHCCHHHHHHHHHHHHHCCCCC
T ss_conf 888630899987642997600586882645246727652357766799998-------6548799999999877577656
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCC------------CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC--------HHH
Q ss_conf 45034687776432100001351------------0059677630211012799999999999975130--------679
Q gi|254780573|r 322 FTVQRLTEAEILLSKWPQTSTSK------------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN--------HDL 381 (461)
Q Consensus 322 fS~e~L~~A~~~l~kl~~~~~~~------------~~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~--------~~~ 381 (461)
T Consensus 306 fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~~~~~~ 385 (464)
T COG0215 306 FSEELLEEAKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKSDAKAV 385 (464)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 68999999999999999999988740132221106789999999987225808999999999998765420242104899
Q ss_pred HHHHHHHHHHCCC-----CCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCE
Q ss_conf 9999999987176-----7432-000146789999999999999881798999999999998897999869988778604
Q gi|254780573|r 382 LPIFNASAHILGI-----EVCK-EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 (461)
Q Consensus 382 ~~~~~~~~~iLGl-----~~~~-~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T 455 (461)
T Consensus 386 ~~~~~~~~~~lg~~~l~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~g------t 459 (464)
T COG0215 386 LSALKALLAILGLKVLGLFPQSGAQEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDG------T 459 (464)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEECCCC------E
T ss_conf 9999999998184010345210112441109999999999999998427888999999999779599977997------2
Q ss_pred EEEEC
Q ss_conf 88724
Q gi|254780573|r 456 RWKQK 460 (461)
Q Consensus 456 ~Wk~k 460 (461)
T Consensus 460 ~w~~~ 464 (464)
T COG0215 460 TWRRK 464 (464)
T ss_pred EEEEC
T ss_conf 79749