HHsearch alignment for GI: 254780573 and conserved domain: COG0215

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=1299.98  Aligned_cols=436  Identities=48%  Similarity=0.822  Sum_probs=404.5

Q ss_pred             CCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             74189888982622330479847999616788884441112799999999999997079984579960552338889999
Q gi|254780573|r    4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA   83 (461)
Q Consensus         4 ~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a   83 (461)
T Consensus         1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~--V~yV~NiTDIDDKIi~rA   78 (464)
T COG0215           1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK--VTYVRNITDIDDKIINRA   78 (464)
T ss_pred             CCEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCE--EEEEECCCCCCHHHHHHH
T ss_conf             918985476540116578999168996188257764456676520299999999982970--799964666638999999


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHCCCC
Q ss_conf             87089864488489999999999999877626854100012356777789999987411432012-89287522002454
Q gi|254780573|r   84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNY  162 (461)
Q Consensus        84 ~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~-~g~VyFdv~~~~~Y  162 (461)
T Consensus        79 ~~~g~~------~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv~~f~~Y  152 (464)
T COG0215          79 REEGLS------IREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDY  152 (464)
T ss_pred             HHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHHHH
T ss_conf             982999------99999999999999999829999865574764799999999999977965884698289952430317


Q ss_pred             CCCCCC-CHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             322467-5466664321022221012351266633776663141467766764332047777875298414874135666
Q gi|254780573|r  163 GSFSRR-KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI  241 (461)
Q Consensus       163 G~Ls~~-~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~  241 (461)
T Consensus       153 G~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLi  232 (464)
T COG0215         153 GKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLI  232 (464)
T ss_pred             HHHCCCCCHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf             86528987667751354566545588001124425899998877998899994468899999987089751246850255


Q ss_pred             CCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             68751366888864087530121003432576420223323321408998502533455777999999984256643211
Q gi|254780573|r  242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID  321 (461)
Q Consensus       242 FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLd  321 (461)
T Consensus       233 FPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l-------~~~~p~~lR~~lls~HYR~pl~  305 (464)
T COG0215         233 FPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLL-------KKYDPEVLRLFLLSSHYRSPLD  305 (464)
T ss_pred             CCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCEEEHHHHH-------HHCCHHHHHHHHHHHHHCCCCC
T ss_conf             888630899987642997600586882645246727652357766799998-------6548799999999877577656


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCC------------CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC--------HHH
Q ss_conf             45034687776432100001351------------0059677630211012799999999999975130--------679
Q gi|254780573|r  322 FTVQRLTEAEILLSKWPQTSTSK------------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN--------HDL  381 (461)
Q Consensus       322 fS~e~L~~A~~~l~kl~~~~~~~------------~~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~--------~~~  381 (461)
T Consensus       306 fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~~~~~~  385 (464)
T COG0215         306 FSEELLEEAKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKSDAKAV  385 (464)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             68999999999999999999988740132221106789999999987225808999999999998765420242104899


Q ss_pred             HHHHHHHHHHCCC-----CCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCE
Q ss_conf             9999999987176-----7432-000146789999999999999881798999999999998897999869988778604
Q gi|254780573|r  382 LPIFNASAHILGI-----EVCK-EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT  455 (461)
Q Consensus       382 ~~~~~~~~~iLGl-----~~~~-~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T  455 (461)
T Consensus       386 ~~~~~~~~~~lg~~~l~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~g------t  459 (464)
T COG0215         386 LSALKALLAILGLKVLGLFPQSGAQEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDG------T  459 (464)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEECCCC------E
T ss_conf             9999999998184010345210112441109999999999999998427888999999999779599977997------2


Q ss_pred             EEEEC
Q ss_conf             88724
Q gi|254780573|r  456 RWKQK  460 (461)
Q Consensus       456 ~Wk~k  460 (461)
T Consensus       460 ~w~~~  464 (464)
T COG0215         460 TWRRK  464 (464)
T ss_pred             EEEEC
T ss_conf             79749