HHsearch alignment for GI: 254780573 and conserved domain: COG0525
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.70 E-value=3.1e-15 Score=129.29 Aligned_cols=314 Identities=19% Similarity=0.213 Sum_probs=206.0
Q ss_pred EEEECCCC---EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CHHHHHHHHHCCC
Q ss_conf 23304798---479996167888844411127999999999999970799845799605523-----3888999987089
Q gi|254780573|r 17 EFQAIDPS---NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-----DDKIIERARQEHP 88 (461)
Q Consensus 17 ~f~p~~~~---~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-----dDkii~~a~~~~~ 88 (461)
T Consensus 23 ~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~--vl~~pG-~DhAGIaTq~~VEk~l~~~g~ 99 (877)
T COG0525 23 YFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYN--VLWPPG-TDHAGIATQVVVEKQLAAEGI 99 (877)
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--EECCCC-CCCCCCHHHHHHHHHHHHCCC
T ss_conf 85678877789727968979988865116545378999999998707973--335798-777883089999999987098
Q ss_pred CCCC-C-----CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--
Q ss_conf 8644-8-----848999999999999987762685410001235---6777789999987411432012892875220--
Q gi|254780573|r 89 SIPI-N-----DAISIITSKNTQQFVKDTTRLACLAPTHQPRAT---NHIPQMIYLIQNIILHGHAYEANNEIIFDTS-- 157 (461)
Q Consensus 89 ~~~~-~-----~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t---~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~-- 157 (461)
T Consensus 100 ~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~ 179 (877)
T COG0525 100 TRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCR 179 (877)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC
T ss_conf 80105899999999999999989999999984787355531126798899999999999997894651487434788633
Q ss_pred ---------------------------------------------------HCCCCCCCCCCCHHHHHHHHHCC---C--
Q ss_conf ---------------------------------------------------02454322467546666432102---2--
Q gi|254780573|r 158 ---------------------------------------------------SIPNYGSFSRRKIDEQKMGTRVP---E-- 181 (461)
Q Consensus 158 ---------------------------------------------------~~~~YG~Ls~~~~~~~~~g~r~~---~-- 181 (461)
T Consensus 180 TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~ 259 (877)
T COG0525 180 TAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEY 259 (877)
T ss_pred CCHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECCCC
T ss_conf 40204450001100368999975389986389981686301026699989987666863588896468897533534733
Q ss_pred -CC----------CCCCCCCEEEEEC------------------------------------------------------
Q ss_conf -22----------1012351266633------------------------------------------------------
Q gi|254780573|r 182 -KY----------HKKNPADFILWKR------------------------------------------------------ 196 (461)
Q Consensus 182 -~~----------~K~~p~DFaLWK~------------------------------------------------------ 196 (461)
T Consensus 260 VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~ 339 (877)
T COG0525 260 VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHS 339 (877)
T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 47767874189716999406545301798720688899705467764458986999999999999968996766444541
Q ss_pred ---------------------------------CCCCCCEE-----------------------ECCCCCCCCCCCC-HH
Q ss_conf ---------------------------------77666314-----------------------1467766764332-04
Q gi|254780573|r 197 ---------------------------------STPMEPGW-----------------------ESPWGRGRPGWHI-EC 219 (461)
Q Consensus 197 ---------------------------------~~~~e~~w-----------------------~spwG~GRPGWHi-EC 219 (461)
T Consensus 340 V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~ 419 (877)
T COG0525 340 VGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKEC 419 (877)
T ss_pred CCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCC
T ss_conf 76116779602012324214870752699999874598468168899889999863837642221131763515996699
Q ss_pred HHHHHH----------------HC---------------------C---------C--CEEEEEECCCCCCCCCHHHHHH
Q ss_conf 777787----------------52---------------------9---------8--4148741356666875136688
Q gi|254780573|r 220 SAMSSH----------------YL---------------------G---------K--VFDIHGGGLDLIFPHHENEIAQ 251 (461)
Q Consensus 220 sam~~~----------------~l---------------------g---------~--~~DIH~GG~DL~FPHHENEiAQ 251 (461)
T Consensus 420 g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~ 499 (877)
T COG0525 420 GNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMR 499 (877)
T ss_pred CCEEECCCCCCCHHHHCCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 83896786543535424682202057852323324115646400689874447773588730035531338999999999
Q ss_pred HHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHH
Q ss_conf 886408753012100343257642022332332140899850253345577799999998425-6643211450346877
Q gi|254780573|r 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT-HYREPIDFTVQRLTEA 330 (461)
Q Consensus 252 s~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss-hYRspLdfS~e~L~~A 330 (461)
T Consensus 500 ~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~-------~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~ 572 (877)
T COG0525 500 GLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID-------KYGADALRFTLASLASPGRDINFDEKRVEGY 572 (877)
T ss_pred HHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHH-------HHCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 998658999627898116786888887555788589799998-------8485899999995368886657688998889
Q ss_pred HHHHHHCCCC
Q ss_conf 7643210000
Q gi|254780573|r 331 EILLSKWPQT 340 (461)
Q Consensus 331 ~~~l~kl~~~ 340 (461)
T Consensus 573 rnF~nKlWNa 582 (877)
T COG0525 573 RNFLNKLWNA 582 (877)
T ss_pred HHHHHHHHHH
T ss_conf 9999998749