HHsearch alignment for GI: 254780573 and conserved domain: PRK12267
>PRK12267 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=1.5e-37 Score=288.72 Aligned_cols=330 Identities=21% Similarity=0.244 Sum_probs=241.7
Q ss_pred EEEEC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99616--7888844411127999999999999970799845799605523388899998708986448848999999999
Q gi|254780573|r 28 MYVCG--PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQ 105 (461)
Q Consensus 28 ~Y~CG--pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~ 105 (461)
T Consensus 6 ~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~--v~f~~GtDehG~kI~~~A~~~g~t------P~e~~d~~~~ 77 (644)
T PRK12267 6 FYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYD--VFFLTGTDEHGQKIQQKAEEAGIT------PQEYVDEISA 77 (644)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCCHHHHHHHHHCCCC------HHHHHHHHHH
T ss_conf 89968998889985545348789999999999846997--598487687529999999985999------9999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC--------CCCC--CCCCCHHHH
Q ss_conf 9999877626854100012356--777789999987411432012892875220024--------5432--246754666
Q gi|254780573|r 106 QFVKDTTRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP--------NYGS--FSRRKIDEQ 173 (461)
Q Consensus 106 ~f~~d~~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~--------~YG~--Ls~~~~~~~ 173 (461)
T Consensus 78 ~~~~~~~~l~Is~-D~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d~g~cp~cg~~~e~~ 156 (644)
T PRK12267 78 GFKDLWDKLDISY-DKFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVDGGKCPDSGHEVELV 156 (644)
T ss_pred HHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEE
T ss_conf 9999999869967-878548988999999999999998899786655123258754333624404578687789976464
Q ss_pred HHHH---HCC------CCCCCCCCCCEEEEECCC---------CCC----CEEEC-CCCCCCC-----------------
Q ss_conf 6432---102------222101235126663377---------666----31414-6776676-----------------
Q gi|254780573|r 174 KMGT---RVP------EKYHKKNPADFILWKRST---------PME----PGWES-PWGRGRP----------------- 213 (461)
Q Consensus 174 ~~g~---r~~------~~~~K~~p~DFaLWK~~~---------~~e----~~w~s-pwG~GRP----------------- 213 (461)
T Consensus 157 ~ee~yffkL~~~~~~L~~~~~~~-p~~i~p~~~~ne~~~~~l~~gL~D~~ISR~~~~WGipvP~d~~~v~YVWfDA~i~Y 235 (644)
T PRK12267 157 KEESYFFRMSKYADRLLEFYEEN-PDFIQPESRKNEMLNNFIKPGLEDLAVSRTSFDWGIPVPSDPKHVVYVWIDALLNY 235 (644)
T ss_pred CCCCEEEEHHHHHHHHHHHHHCC-CCEECCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCH
T ss_conf 05651443466789999999609-97467625887999999857785543024778888857898760799842243003
Q ss_pred ----CCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHH
Q ss_conf ----4332047777875298414874135666687513668888640875301210034325764202233233214089
Q gi|254780573|r 214 ----GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 (461)
Q Consensus 214 ----GWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~ 289 (461)
T Consensus 236 isa~g~~~~~~~~~~~~Wp--~~~h~iGkDii~FH~i~wpamL~~~~-~~~p~~v~~h-g~~~~~g~KmSKS~Gn~i~~~ 311 (644)
T PRK12267 236 ITALGYGSDDDELFMKFWP--ADVHLVGKDILRFHAIYWPIMLMALD-LPLPKHLFAH-GWWLMKDGKMSKSKGNVVDPE 311 (644)
T ss_pred HHHHCCCCCCCHHHHHHCC--HHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCCEEECC-CEEECCCCEECCCCCCEECHH
T ss_conf 4341386212266776373--13302685532366889999999769-9986445104-418717860055368422379
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHHHH---------HHHHCCCCC--------CCC---CCCC
Q ss_conf 9850253345577799999998425-664321145034687776---------432100001--------351---0059
Q gi|254780573|r 290 ELLETKKFGGRSWPAPVIRLAMLMT-HYREPIDFTVQRLTEAEI---------LLSKWPQTS--------TSK---GIID 348 (461)
Q Consensus 290 dlL~~~~~~~k~y~p~viR~~lLss-hYRspLdfS~e~L~~A~~---------~l~kl~~~~--------~~~---~~~~ 348 (461)
T Consensus 312 ~~~-------~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d 384 (644)
T PRK12267 312 ELV-------DRYGLDALRYYLLREVPFGSDGDFSPEAFVERINSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFD 384 (644)
T ss_pred HHH-------HHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 998-------7559404364644448878777789999999988998877778999999998875188678887787456
Q ss_pred HHHH----------HHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6776----------30211012799999999999975130
Q gi|254780573|r 349 PAVL----------SALYNDLNTVSAIQALHKLARESTKN 378 (461)
Q Consensus 349 ~~f~----------~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461)
T Consensus 385 ~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~~~N~Y 424 (644)
T PRK12267 385 EELLALAKETLKKYEEAMEALQFSRALEELWKLISRANKY 424 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999997126999999999999999998