HHsearch alignment for GI: 254780573 and conserved domain: PRK12418
>PRK12418 cysteinyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=1099.32 Aligned_cols=365 Identities=34% Similarity=0.596 Sum_probs=337.5
Q ss_pred EEECCCC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCH
Q ss_conf 3304798-479996167888844411127999999999999970799845799605523388899998708986448848
Q gi|254780573|r 18 FQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAI 96 (461)
Q Consensus 18 f~p~~~~-~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~ 96 (461)
T Consensus 1 ~~P~~Pg~~V~mY~CGPTVYd~~HiGhaRt~v~fD~l~R~L~~~gy~--V~~v~NiTDVDDKii~~A~~~g~~------~ 72 (384)
T PRK12418 1 VRPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVQRVWLDAGHD--VHYVQNVTDVDDPLLERAARDGVD------W 72 (384)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHCCC------H
T ss_conf 98889999689996688688885423351689999999999980996--499981050638999999985939------9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCEEECCHHCCCCCCCCCCCHHH
Q ss_conf 9999999999999877626854100012356777789999987411432012----892875220024543224675466
Q gi|254780573|r 97 SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA----NNEIIFDTSSIPNYGSFSRRKIDE 172 (461)
Q Consensus 97 ~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~----~g~VyFdv~~~~~YG~Ls~~~~~~ 172 (461)
T Consensus 73 ~ela~~~~~~f~~d~~~Lnv~~p~~~praTe~I~~ii~~I~~Li~~G~AY~~~~~~~G~VYFdv~~~~~YG~ls~~~~~~ 152 (384)
T PRK12418 73 RDLAAREIALFREDMAALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDPEYGDVYFSVDATPQFGYESGYDRET 152 (384)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCHHHHCCCCCCCHHH
T ss_conf 99999999999999998299999500321137999999999999679557756888886899952422114501599899
Q ss_pred HHHH--HHC-C-CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
Q ss_conf 6643--210-2-22210123512666337766631414677667643320477778752984148741356666875136
Q gi|254780573|r 173 QKMG--TRV-P-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248 (461)
Q Consensus 173 ~~~g--~r~-~-~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENE 248 (461)
T Consensus 153 ~~~~~~e~~~~~~~~~Kr~p~DFaLWK~~~~gEp~W~SPWG~GRPGWHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENE 232 (384)
T PRK12418 153 MLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFS 232 (384)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHH
T ss_conf 98775331577543357886660355757777888769988808843056589999875997678468625658883549
Q ss_pred HHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 68888640875301210034325764202233233214089985025334557779999999842566432114503468
Q gi|254780573|r 249 IAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 (461)
Q Consensus 249 iAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e~L~ 328 (461)
T Consensus 233 iAQsea~~g~~~~a~yW~H~g~l~~~geKMSKSlGN~i~i~dl~~------~g~~p~~~R~~lL~~hYR~~l~fs~~~l~ 306 (384)
T PRK12418 233 AAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRA------AGVDPAAIRLALLAGHYRSDREWTDAVLA 306 (384)
T ss_pred HHHHHHHHCCCHHHHHHHHHCEEEECCEECCCCCCCEEEHHHHHH------CCCCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 999998658974878886004266888674566887146999986------38987999999970567997688999999
Q ss_pred HHHHHHHHCCCCCCCC-----CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHCCCCC
Q ss_conf 7776432100001351-----00596776302110127999999999999751306-----79999999998717674
Q gi|254780573|r 329 EAEILLSKWPQTSTSK-----GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH-----DLLPIFNASAHILGIEV 396 (461)
Q Consensus 329 ~A~~~l~kl~~~~~~~-----~~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~-----~~~~~~~~~~~iLGl~~ 396 (461)
T Consensus 307 ~A~~~l~r~~~a~~~~~~~~~~~~~~~~~~al~DDlNTP~Ala~l~~l~~~~n~~~~~d~~~~~~~~~a~~~~LG~~l 384 (384)
T PRK12418 307 EAEARLARWRAATALPAGPDAADVVARVREYLADDLDTPGALAAVDGWATDALEYGGHDAAAPALVATAVDALLGVAL 384 (384)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999998716678866889999999987426558999999999999973268881149999999998618769