HHsearch alignment for GI: 254780573 and conserved domain: cd00674

>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.89  E-value=2.2e-21  Score=173.19  Aligned_cols=271  Identities=19%  Similarity=0.217  Sum_probs=187.4

Q ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----HHHHHHHHHCCCCC-------CCC
Q ss_conf             799961678888444111279999999999999707998457996055233-----88899998708986-------448
Q gi|254780573|r   26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID-----DKIIERARQEHPSI-------PIN   93 (461)
Q Consensus        26 v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDid-----Dkii~~a~~~~~~~-------~~~   93 (461)
T Consensus        20 ~~v~~tG~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~--~~~i~~~DD~D~lRKVp~~lpe~~~~ylg~PL~~IPdP~G   97 (354)
T cd00674          20 KYVVASGISPSGLIHIGNFREVVTADAVRRALRDLGFE--VRLIYSWDDYDPLRKVPDNVPESLEQYIGMPLSSVPDPFG   97 (354)
T ss_pred             CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEEEECCCHHCCCCCCCCHHHHHHCCCCCEECCCCCC
T ss_conf             58994787999886320550178899999999975996--7999984055510037557879999862996300689777


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHH---HHHHHHHHHHHHHHHHCCCCCCC--CCCEEECCHHC-CCCC
Q ss_conf             8489999999999999877626854----1000123---56777789999987411432012--89287522002-4543
Q gi|254780573|r   94 DAISIITSKNTQQFVKDTTRLACLA----PTHQPRA---TNHIPQMIYLIQNIILHGHAYEA--NNEIIFDTSSI-PNYG  163 (461)
Q Consensus        94 ~~~~~~a~~~~~~f~~d~~~L~v~~----p~~~pr~---t~~i~~~i~~i~~L~~~g~aY~~--~g~VyFdv~~~-~~YG  163 (461)
T Consensus        98 ~-~~SyaeHf~~~f~~~L~~~gi~~e~~s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~g~e~~~~y~P~~piC~~cG  176 (354)
T cd00674          98 C-HESYAEHFNAPFEESLDRFGIEVEFISASEMYKSGLYDEQIKRALEKRDEIMEILNEYRGRELQETWYPYMPYCEKCG  176 (354)
T ss_pred             C-CCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
T ss_conf             7-545999999999999998498289988566022576279999999828999999998547555786477764058888


Q ss_pred             CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             22467546666432102222101235126663377666314146776676433204777787529841487413566668
Q gi|254780573|r  164 SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP  243 (461)
Q Consensus       164 ~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FP  243 (461)
T Consensus       177 k~~----------t~v~---~~d~~~~~V~Y~c~cG~~~~~~~~~g~gKL~WrvDW~-mRW~~lg--Vd~Ep~GKDh~~~  240 (354)
T cd00674         177 KDT----------TTVE---EYDAEAETVRYRCECGHEGEVDIRGGGGKLQWRVDWA-MRWAALG--VDFEPFGKDHASS  240 (354)
T ss_pred             CCE----------EEEE---EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCE-EEEEECC--EEEEECCCCCCCC
T ss_conf             116----------7689---9948999799995999888884378862030010351-4553405--1588357420246


Q ss_pred             CCHHHHHHHHH--HCCCCCCHHHEECCCEEEE-EECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CCC
Q ss_conf             75136688886--4087530121003432576-4202233233214089985025334557779999999842566-432
Q gi|254780573|r  244 HHENEIAQSCC--ADRIEKTANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY-REP  319 (461)
Q Consensus       244 HHENEiAQs~a--~~~~~~~a~yWlH~G~l~i-~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshY-Rsp  319 (461)
T Consensus       241 GgS~d~~~~I~~~i~g~~pP-~~~~Y-E~~~~kgg~KmSsSkGn~it~~e~L-------~~~~pE~lr~l~~~~p~~~k~  311 (354)
T cd00674         241 GGSYDTSKEIAREIFGGEPP-EGVMY-EFIGLKGGGKMSSSKGNVITPRDWL-------EVAPPESLRFLYARRKNPAKH  311 (354)
T ss_pred             CCCHHHHHHHHHHHCCCCCC-CCCCE-EEEEECCCCCCCCCCCCCCCHHHHH-------HHCCHHHHHHHHHHCCCCCCC
T ss_conf             75255789999997099999-88416-9999069987224678612899999-------765999999998609985532


Q ss_pred             CCCCH
Q ss_conf             11450
Q gi|254780573|r  320 IDFTV  324 (461)
Q Consensus       320 LdfS~  324 (461)
T Consensus       312 i~fD~  316 (354)
T cd00674         312 IGFDL  316 (354)
T ss_pred             CCCCC
T ss_conf             24675