HHsearch alignment for GI: 254780573 and conserved domain: cd00805
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.92 E-value=0.0007 Score=48.12 Aligned_cols=86 Identities=22% Similarity=0.203 Sum_probs=51.6
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCCCHHHEECCCE-EEEEECCCCCCCCCCCCHHHHHCC--
Q ss_conf 7777875298414874135666687513--66888864087530121003432-576420223323321408998502--
Q gi|254780573|r 220 SAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEKTANIWIHNGF-LNLEGRKMSKSNGNFITINELLET-- 294 (461)
Q Consensus 220 sam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~~a~yWlH~G~-l~i~geKMSKSlGN~iti~dlL~~-- 294 (461)
T Consensus 140 vlQAaDil~~~~~~vpvG~DQ~-~hiel~Rdia~r~--n~~~~~~---l~~pll~g~dG~KMSKS~~N~i~i~-l~dsp~ 212 (268)
T cd00805 140 LLQAYDFVYLDVDIQLGGSDQR-GNITLGRDLIRRL--GYKKVVG---LTTPLLTGLDGGKMSKSEGNAIWDG-LLDSPY 212 (268)
T ss_pred HHHHCCHHHHCCCCEECCHHHH-HHHHHHHHHHHHH--CCCCCEE---EEECEEECCCCCCCCCCCCCCCCCC-CCCCHH
T ss_conf 9986018671377146060089-9999999999982--8976145---5311000899874467899950131-215558
Q ss_pred --CCCCCCCCCHHHHHHHHH
Q ss_conf --533455777999999984
Q gi|254780573|r 295 --KKFGGRSWPAPVIRLAML 312 (461)
Q Consensus 295 --~~~~~k~y~p~viR~~lL 312 (461)
T Consensus 213 ~i~~ki~~~~d~~v~~~~~~ 232 (268)
T cd00805 213 DFYQKIRNAPDPDVLKFLKL 232 (268)
T ss_pred HHHHHEEECCCCCHHHHHHH
T ss_conf 88614402886049999999