HHsearch results for GI: 254780573 and protein with PDBid: 1iq0_A
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.73 E-value=1.8e-15 Score=129.35 Aligned_cols=300 Identities=16% Similarity=0.147 Sum_probs=156.2
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH---HHHHHHCCCCCCCCCCHH
Q ss_conf 47984799961678888444111279999999999999707998457996055233888---999987089864488489
Q gi|254780573|r 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI---IERARQEHPSIPINDAIS 97 (461)
Q Consensus 21 ~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDki---i~~a~~~~~~~~~~~~~~ 97 (461)
..+++|-+=.|.|.+-.+.||||+|+.+..|.|.|.|++.|++ |...--|-|.--.+ +..-+..+.+........
T Consensus 100 ~~~~~v~VEf~SpNp~k~lHvGHlRstiiGd~laril~~~G~~--V~r~nyigD~G~Qi~~~~~~~~~~~~~~~~~~~~~ 177 (592)
T 1iq0_A 100 RRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGRE--VLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYD 177 (592)
T ss_dssp CEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEE--EEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 7787799984589899986401278789889999999707998--76887528873353799999998564323322456
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC----CCCCCCCCCHHH
Q ss_conf 999999999999877626854100-012356777789999987411432012892875220024----543224675466
Q gi|254780573|r 98 IITSKNTQQFVKDTTRLACLAPTH-QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NYGSFSRRKIDE 172 (461)
Q Consensus 98 ~~a~~~~~~f~~d~~~L~v~~p~~-~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~----~YG~Ls~~~~~~ 172 (461)
.....+...+.++.......+.-. .-.+-+. .+..+.+++.+....+.-..-+|.||.-.++ ..|.+. ..++.
T Consensus 178 ~~~~~~y~~~~~~~~~~~~~~~~~e~~~~~e~-~~~~e~~~~~l~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~-~~~~~ 255 (592)
T 1iq0_A 178 HFAGRAYVRLHQDPEYERLQPAIEEVLHALER-GELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQ-KALAL 255 (592)
T ss_dssp HHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHT-TTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHH-HHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCEECCCCEECCCCCCCCHH-HHHHH
T ss_conf 65020366652346777888779999999877-67999999999988878987454412032013322376338-88899
Q ss_pred HHH-HHHCCCCCCCCCCCCEEEEECCCCC-----CCEEECCCCCCCCCCCCHHHHHHHHHCCCC---------------E
Q ss_conf 664-3210222210123512666337766-----631414677667643320477778752984---------------1
Q gi|254780573|r 173 QKM-GTRVPEKYHKKNPADFILWKRSTPM-----EPGWESPWGRGRPGWHIECSAMSSHYLGKV---------------F 231 (461)
Q Consensus 173 ~~~-g~r~~~~~~K~~p~DFaLWK~~~~~-----e~~w~spwG~GRPGWHiECsam~~~~lg~~---------------~ 231 (461)
+.. |..... +....+-++|-..++. ++..--...+|.|.+..-.-|....-++.. +
T Consensus 256 l~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~vl~rsdG~~tY~~~DiA~~~~k~~~~~~~~~~~~~~~~~~~~ 332 (592)
T 1iq0_A 256 LEQSPHVFRP---REGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGL 332 (592)
T ss_dssp HTTSTTEECC---SSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTC
T ss_pred HHHCCCEEEC---CCCCCCEEEEEECCCEECCCCCCEEEEECCCCCEEEECHHHHHHHHHHCCCCCCCEECCCCCCHHHH
T ss_conf 9862302312---4556542799832302115777605898268955775203788888504421100002233423777
Q ss_pred E----------------EEEECCCCCCCCCHHHHHHHHHHCCCCCCHH--HEECCCEEEEEECCCCCCCCCCCCHHHHHC
Q ss_conf 4----------------8741356666875136688886408753012--100343257642022332332140899850
Q gi|254780573|r 232 D----------------IHGGGLDLIFPHHENEIAQSCCADRIEKTAN--IWIHNGFLNLEGRKMSKSNGNFITINELLE 293 (461)
Q Consensus 232 D----------------IH~GG~DL~FPHHENEiAQs~a~~~~~~~a~--yWlH~G~l~i~geKMSKSlGN~iti~dlL~ 293 (461)
| |+.=|.+ --||...+.++....|..+++. ..+..|+|+.+|.|||+..||+++++|+|+
T Consensus 333 d~~~~~~~~~~~~~d~~I~vvd~~--Q~~h~~~v~~~l~~~g~~~~~~~~~hi~~g~v~~~g~kMStR~G~~i~l~dll~ 410 (592)
T 1iq0_A 333 RTSAPEGEAYTPKAEETINVVDVR--QSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE 410 (592)
T ss_dssp EEEEEEEEECCCCCSEEEEEEESS--SCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEECCCEEEECCCCCEEEHHHHHH
T ss_conf 776542020012200345444024--203899999999985787133110246678997276344314775468999999
Q ss_pred CCCCC------------------CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 25334------------------5577799999998425664321145034687
Q gi|254780573|r 294 TKKFG------------------GRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 (461)
Q Consensus 294 ~~~~~------------------~k~y~p~viR~~lLsshYRspLdfS~e~L~~ 329 (461)
+.... .+...-.++||++|+....++++|+++.+.+
T Consensus 411 e~~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~l~ 464 (592)
T 1iq0_A 411 EATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALS 464 (592)
T ss_dssp HHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 999999998764023203456799885320368763215765566769999965