HHsearch results for GI: 254780573 and protein with PDBid: 2cfo_A
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.47 E-value=1e-11 Score=102.51 Aligned_cols=253 Identities=19% Similarity=0.172 Sum_probs=152.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987
Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461)
Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461)
-|++-++.||||+||+++-=++.| ..|+ .++.=|-|.|- .|+ ...|++..++++
T Consensus 7 aPsPtG~lHiG~~rtal~n~~~a~---~~~G----~~iLRieDtD~---~R~----------------~~~~~~~I~~~L 60 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYAR---HRGG----KFILRIEDTDR---ERS----------------RPEYTENILEGL 60 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH---HTTC----EEEEEECCCSS---SSC----------------CHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---HCCC----EEEEEECCCCC---CCC----------------CHHHHHHHHHHH
T ss_conf 889898541899999999999999---8099----89999687997---747----------------879999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CEE------ECCHHCCCC-CCCCCCCHHHHHH----HH
Q ss_conf 762685410001235677778999998741143201289---287------522002454-3224675466664----32
Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN---EII------FDTSSIPNY-GSFSRRKIDEQKM----GT 177 (461)
Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g---~Vy------Fdv~~~~~Y-G~Ls~~~~~~~~~----g~ 177 (461)
+.|++....-.-+.|++.+--.+++++|+++|.||.-.- .+= -.-.+.+.| |.-.+...+++.. |.
T Consensus 61 ~wlGl~~d~~~~~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~~~~~~~~e~~~~~~~g~ 140 (492)
T 2cfo_A 61 QWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGR 140 (492)
T ss_dssp HHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTC
T ss_pred HHCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 97899999977617217999999999999869957727999999999987633799998746664100666765665599
Q ss_pred ----HCCCCCC-CCCCCCEEEEECCCC-----CCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
Q ss_conf ----1022221-012351266633776-----663141467766764332047777875298414874135666687513
Q gi|254780573|r 178 ----RVPEKYH-KKNPADFILWKRSTP-----MEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 (461)
Q Consensus 178 ----r~~~~~~-K~~p~DFaLWK~~~~-----~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN 247 (461)
|...... .-.-.|.+..+-..+ +.+.--.+...++.||.+-+-|.+-.-.-..+.....|.|++...+-.
T Consensus 141 ~~~~R~k~~~~~~~~~~D~v~g~~~~~~~~~~~d~ii~~~~~~~~dg~ptY~~a~~vDD~~~~ithviRg~d~~~~t~~~ 220 (492)
T 2cfo_A 141 TPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQ 220 (492)
T ss_dssp CCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHH
T ss_pred CEEEEEECCCCCCEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 80699973788853565330005764100257973464045767777532775444067556767787352012553499
Q ss_pred HHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 6688886408753012100343257642022332332140899850253345577799999998425664321
Q gi|254780573|r 248 EIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 (461)
Q Consensus 248 EiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspL 320 (461)
...+ ++..- ++ -.|+-|.-.++.+|+||||.-| ..+|.++.+ +||.|+++.-||..--|+.|-
T Consensus 221 ~~~~-~~l~~-~~-p~~~h~pll~~~~g~klSKr~~-~~~v~~~r~------~G~~peAl~NyLa~LGws~~~ 283 (492)
T 2cfo_A 221 ILLY-EALGA-TP-PNFAHTPLILNSTGQKLSKRDG-VTSISDFRA------MGYLAPALANYMTLLGWSPPE 283 (492)
T ss_dssp HHHH-HHTTC-CC-CEEEEECCEECSSSSBCCTTSS-CCBHHHHHH------TTCCHHHHHHHHHHTTBCCCT
T ss_pred HHHH-HHHCC-CC-CCEEEHHHHCCCCCCCCCCCCC-CCCHHHHHH------CCCCCHHHHHHHHHHCCCCCC
T ss_conf 9998-75257-99-8365374631667873232389-754777876------799808999999994899988