HHsearch results for GI: 254780573 and protein with PDBid: 3fnr_A
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.91 E-value=1.5e-21 Score=172.91 Aligned_cols=282 Identities=16% Similarity=0.114 Sum_probs=167.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCH-------HHHHHHHHCC----CC
Q ss_conf 798479996167888844411127999999999999970799845799605-52338-------8899998708----98
Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNI-TDIDD-------KIIERARQEH----PS 89 (461)
Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~ni-TDidD-------kii~~a~~~~----~~ 89 (461)
.+.+|-+=.-.|.+-.+.||||+|+.+..|.|+|+|++.|++ |. ..|. -|.-- .+......+- ..
T Consensus 28 ~~~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~--V~-r~nylgD~G~Q~g~l~~~~~~~~~~~~~~~~~~ 104 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYK--FN-TEYYVNDAGNQIYLLGLSILLSVKESILHENVE 104 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCE--EE-EEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCE--EE-EEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 898799975599989875252004169999999999986992--78-999878859999999999999855553045521
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC-CCCCCCCC
Q ss_conf 64488489999999999999877626854100012356777789999987411432012892875220024-54322467
Q gi|254780573|r 90 IPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-NYGSFSRR 168 (461)
Q Consensus 90 ~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~-~YG~Ls~~ 168 (461)
.+......+-.....++.++.........+.....+.-..+.+++.+++..++ -+|.||.-..+ .|-.....
T Consensus 105 ~~~~~y~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------l~v~fD~~~~ES~~~~~~~~ 177 (464)
T 3fnr_A 105 YPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQ-------AKIKIDSYVSERSYYDALNA 177 (464)
T ss_dssp CCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHH-------TTCCCSCEEEGGGGSTTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCEEEEEHHHHHHHHHHHH
T ss_conf 04554246666689999999877753115569999999999999999987997-------08510000115788877999
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCEEEEECCCC-CC-CEEECCCCCCCCCCCCHHHHHHHHHCCC--CEEEEEECCCCCCCC
Q ss_conf 5466664321022221012351266633776-66-3141467766764332047777875298--414874135666687
Q gi|254780573|r 169 KIDEQKMGTRVPEKYHKKNPADFILWKRSTP-ME-PGWESPWGRGRPGWHIECSAMSSHYLGK--VFDIHGGGLDLIFPH 244 (461)
Q Consensus 169 ~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~-~e-~~w~spwG~GRPGWHiECsam~~~~lg~--~~DIH~GG~DL~FPH 244 (461)
-++++.....+.. .|.++|....+ ++ +..---.+.|.+.|...+-|+....++. ...|+..|.|..++|
T Consensus 178 ~~~~l~~~~~~~e-------~~ga~~~~~~~~~d~~~~~l~ksdG~~~Y~t~Dia~~~~k~~~~~d~~I~v~g~dq~~~~ 250 (464)
T 3fnr_A 178 TLESLKEHKGIYE-------QEGKIWLASSQKGDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYI 250 (464)
T ss_dssp HHHHHHHTTCEEE-------ETTEEEECGGGGTCSSCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGH
T ss_pred HHHHHHHCCCEEE-------ECCCEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
T ss_conf 9998864598685-------379877501103788785279607974101458999999872289728999866046677
Q ss_pred CHHHHHHHHHHCCCCCCHHHEECCCEEEEEE---CCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 5136688886408753012100343257642---0223323321408998502533455777999999984256643211
Q gi|254780573|r 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEG---RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 (461)
Q Consensus 245 HENEiAQs~a~~~~~~~a~yWlH~G~l~i~g---eKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLd 321 (461)
+....++..+..+ .....+|+|.++..+.+ .|||++.||+++++|+++ .....++||++|+.++++++.
T Consensus 251 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l~dll~-------evg~~airy~~L~~~~~~~~~ 322 (464)
T 3fnr_A 251 PRMKAAMEFLGFD-SNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVD-------EIGSDALRYIFLSKKCDTHLE 322 (464)
T ss_dssp HHHHHHHHTTTCC-GGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHH-------HHCHHHHHHHTTSSCTTSCEE
T ss_pred HHHHHHHHHCCCC-CCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHH-------HHHHHHHHHHHHCCCCCCCCC
T ss_conf 6799999975677-55640589888899769802344147888355999999-------974778766653146555553
Q ss_pred CCHHHHH
Q ss_conf 4503468
Q gi|254780573|r 322 FTVQRLT 328 (461)
Q Consensus 322 fS~e~L~ 328 (461)
|+++.+.
T Consensus 323 Fd~~~~~ 329 (464)
T 3fnr_A 323 FDISDLQ 329 (464)
T ss_dssp EEGGGGG
T ss_pred CCHHHHH
T ss_conf 4668775