HHsearch results for GI: 254780573 and protein with PDBid: 3fnr_A

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.91  E-value=1.5e-21  Score=172.91  Aligned_cols=282  Identities=16%  Similarity=0.114  Sum_probs=167.6

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCH-------HHHHHHHHCC----CC
Q ss_conf             798479996167888844411127999999999999970799845799605-52338-------8899998708----98
Q gi|254780573|r   22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNI-TDIDD-------KIIERARQEH----PS   89 (461)
Q Consensus        22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~ni-TDidD-------kii~~a~~~~----~~   89 (461)
                      .+.+|-+=.-.|.+-.+.||||+|+.+..|.|+|+|++.|++  |. ..|. -|.--       .+......+-    ..
T Consensus        28 ~~~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~--V~-r~nylgD~G~Q~g~l~~~~~~~~~~~~~~~~~~  104 (464)
T 3fnr_A           28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYK--FN-TEYYVNDAGNQIYLLGLSILLSVKESILHENVE  104 (464)
T ss_dssp             CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCE--EE-EEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred             CCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCE--EE-EEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             898799975599989875252004169999999999986992--78-999878859999999999999855553045521


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC-CCCCCCCC
Q ss_conf             64488489999999999999877626854100012356777789999987411432012892875220024-54322467
Q gi|254780573|r   90 IPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-NYGSFSRR  168 (461)
Q Consensus        90 ~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~-~YG~Ls~~  168 (461)
                      .+......+-.....++.++.........+.....+.-..+.+++.+++..++       -+|.||.-..+ .|-.....
T Consensus       105 ~~~~~y~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------l~v~fD~~~~ES~~~~~~~~  177 (464)
T 3fnr_A          105 YPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQ-------AKIKIDSYVSERSYYDALNA  177 (464)
T ss_dssp             CCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHH-------TTCCCSCEEEGGGGSTTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCEEEEEHHHHHHHHHHHH
T ss_conf             04554246666689999999877753115569999999999999999987997-------08510000115788877999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCEEEEECCCC-CC-CEEECCCCCCCCCCCCHHHHHHHHHCCC--CEEEEEECCCCCCCC
Q ss_conf             5466664321022221012351266633776-66-3141467766764332047777875298--414874135666687
Q gi|254780573|r  169 KIDEQKMGTRVPEKYHKKNPADFILWKRSTP-ME-PGWESPWGRGRPGWHIECSAMSSHYLGK--VFDIHGGGLDLIFPH  244 (461)
Q Consensus       169 ~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~-~e-~~w~spwG~GRPGWHiECsam~~~~lg~--~~DIH~GG~DL~FPH  244 (461)
                      -++++.....+..       .|.++|....+ ++ +..---.+.|.+.|...+-|+....++.  ...|+..|.|..++|
T Consensus       178 ~~~~l~~~~~~~e-------~~ga~~~~~~~~~d~~~~~l~ksdG~~~Y~t~Dia~~~~k~~~~~d~~I~v~g~dq~~~~  250 (464)
T 3fnr_A          178 TLESLKEHKGIYE-------QEGKIWLASSQKGDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYI  250 (464)
T ss_dssp             HHHHHHHTTCEEE-------ETTEEEECGGGGTCSSCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGH
T ss_pred             HHHHHHHCCCEEE-------ECCCEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
T ss_conf             9998864598685-------379877501103788785279607974101458999999872289728999866046677


Q ss_pred             CHHHHHHHHHHCCCCCCHHHEECCCEEEEEE---CCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             5136688886408753012100343257642---0223323321408998502533455777999999984256643211
Q gi|254780573|r  245 HENEIAQSCCADRIEKTANIWIHNGFLNLEG---RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID  321 (461)
Q Consensus       245 HENEiAQs~a~~~~~~~a~yWlH~G~l~i~g---eKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLd  321 (461)
                      +....++..+..+ .....+|+|.++..+.+   .|||++.||+++++|+++       .....++||++|+.++++++.
T Consensus       251 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l~dll~-------evg~~airy~~L~~~~~~~~~  322 (464)
T 3fnr_A          251 PRMKAAMEFLGFD-SNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVD-------EIGSDALRYIFLSKKCDTHLE  322 (464)
T ss_dssp             HHHHHHHHTTTCC-GGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHH-------HHCHHHHHHHTTSSCTTSCEE
T ss_pred             HHHHHHHHHCCCC-CCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHH-------HHHHHHHHHHHHCCCCCCCCC
T ss_conf             6799999975677-55640589888899769802344147888355999999-------974778766653146555553


Q ss_pred             CCHHHHH
Q ss_conf             4503468
Q gi|254780573|r  322 FTVQRLT  328 (461)
Q Consensus       322 fS~e~L~  328 (461)
                      |+++.+.
T Consensus       323 Fd~~~~~  329 (464)
T 3fnr_A          323 FDISDLQ  329 (464)
T ss_dssp             EEGGGGG
T ss_pred             CCHHHHH
T ss_conf             4668775