HHsearch alignment for GI: 254780575 and conserved domain: COG2962
>COG2962 RarD Predicted permeases [General function prediction only].
Probab=100.00 E-value=1.7e-36 Score=215.85 Aligned_cols=290 Identities=31% Similarity=0.580 Sum_probs=263.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 52779999999999999999999999638988999999999999999999999710000112210350011233434666
Q gi|254780575|r 21 LPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATI 100 (316)
Q Consensus 21 ~~~~~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (316)
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~-~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRE-LKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHH
T ss_conf 74322216999999999899999999714898899999999999999999999850289-99998390999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q ss_conf 8875334666653345899999997699999999742023564379999999986565566236-885205779999986
Q gi|254780575|r 101 LAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH-SGIPLLSLAIAVTWS 179 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~ 179 (316)
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~ 161 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFG 161 (293)
T ss_pred HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99777875053179853688767999899999999999971446889999999999999999980898599999999999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 53210001123444225788999999877775310013456567872566788653344211579999999862586999
Q gi|254780575|r 180 AYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTV 259 (316)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~ 259 (316)
T Consensus 162 ~Ygl~RK~~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~-~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~ 240 (293)
T COG2962 162 LYGLLRKKLKVDALTGLTLETLLLLPVALIYLLFLADSGQ-FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTL 240 (293)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999998637860776899999996999999999823732-664177418999999638889899999999752778999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999978889989999999999999999999999987755
Q gi|254780575|r 260 GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 260 s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
T Consensus 241 G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~~ 293 (293)
T COG2962 241 GFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKKR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998799999999999817899889999999999999999889999875039