HHsearch alignment for GI: 254780575 and conserved domain: COG2962

>COG2962 RarD Predicted permeases [General function prediction only].
Probab=100.00  E-value=1.7e-36  Score=215.85  Aligned_cols=290  Identities=31%  Similarity=0.580  Sum_probs=263.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             52779999999999999999999999638988999999999999999999999710000112210350011233434666
Q gi|254780575|r   21 LPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATI  100 (316)
Q Consensus        21 ~~~~~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (316)
T Consensus         3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~-~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           3 KDSRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRE-LKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHH
T ss_conf             74322216999999999899999999714898899999999999999999999850289-99998390999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q ss_conf             8875334666653345899999997699999999742023564379999999986565566236-885205779999986
Q gi|254780575|r  101 LAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH-SGIPLLSLAIAVTWS  179 (316)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~  179 (316)
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~  161 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFG  161 (293)
T ss_pred             HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99777875053179853688767999899999999999971446889999999999999999980898599999999999


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             53210001123444225788999999877775310013456567872566788653344211579999999862586999
Q gi|254780575|r  180 AYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTV  259 (316)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~  259 (316)
T Consensus       162 ~Ygl~RK~~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~-~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~  240 (293)
T COG2962         162 LYGLLRKKLKVDALTGLTLETLLLLPVALIYLLFLADSGQ-FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTL  240 (293)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             9999998637860776899999996999999999823732-664177418999999638889899999999752778999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999978889989999999999999999999999987755
Q gi|254780575|r  260 GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK  312 (316)
Q Consensus       260 s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~  312 (316)
T Consensus       241 G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~~  293 (293)
T COG2962         241 GFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKKR  293 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99998799999999999817899889999999999999999889999875039