HHsearch alignment for GI: 254780575 and conserved domain: COG4975
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism].
Probab=97.47 E-value=4.4e-05 Score=44.65 Aligned_cols=261 Identities=10% Similarity=0.040 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999996389889999999999999999999997100001122103500112334346668875
Q gi|254780575|r 25 MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVH 104 (316)
Q Consensus 25 ~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~GG~p~qQ~lGtT--~GALifaiiv~~~~~p~-------~T~~~~iv~~isG~~Ws~G 72 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFGGKPYQQTLGTT--LGALIFAIIVFLFVSPE-------LTLTIFIVGFISGAFWSFG 72 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCC--HHHHHHHHHHHEEECCC-------CCHHHHHHHHHHHHHHHHH
T ss_conf 63899997798704305035403797367664012--99999998773032676-------3255678998746676211
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH----HHCCCCC-----CHH--HH
Q ss_conf 3346666533458999999-9769999999974202356437999999998656556----6236885-----205--77
Q gi|254780575|r 105 WGFFIYALLTRQGFLTSFS-YFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLI----MTLHSGI-----PLL--SL 172 (316)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~-----~~~--~~ 172 (316)
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kk 152 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKK 152 (288)
T ss_pred HHHHHHHEEEEEEECCCCCCCHHHHHHCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHH
T ss_conf 25423210021000136665115675300066899701686145789999999998761575410444212147676652
Q ss_pred ------HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------99999865321000112344422578899999987777531001345656787256678865334421157999
Q gi|254780575|r 173 ------AIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCI 246 (316)
Q Consensus 173 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~ 246 (316)
T Consensus 153 gi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~----~~~-~~~~~K~t~~ni--i~G~~Wa~GNl~ 225 (288)
T COG4975 153 GIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF----FKM-EKRFNKYTWLNI--IPGLIWAIGNLF 225 (288)
T ss_pred HEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH----CCC-CCCHHHHHHHHH--HHHHHHHHHHHH
T ss_conf 3235666312136657661001554132012778779999999865----156-530678899987--657888753889
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHH
Q ss_conf 99998625869999999999999999999997888998999----99999999999999
Q gi|254780575|r 247 FSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRT----IVFGIVVIAMVVYL 301 (316)
Q Consensus 247 ~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~----iG~~lIi~gv~l~~ 301 (316)
T Consensus 226 ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 226 MLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHHHCEEEEEEHHHHEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98760220501245475520002541238998314763661035446799987766632