HHsearch alignment for GI: 254780575 and conserved domain: COG5070

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].
Probab=98.15  E-value=0.00031  Score=39.98  Aligned_cols=199  Identities=11%  Similarity=0.095  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHH
Q ss_conf             33458999999976999999997420235643799999999865655662368-------------85205779999986
Q gi|254780575|r  113 LTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS-------------GIPLLSLAIAVTWS  179 (316)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~~~~~~~  179 (316)
T Consensus        90 qyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~-~Nclssa  168 (309)
T COG5070          90 QYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMF-TNCLSSA  168 (309)
T ss_pred             EEEEEEHHHHHCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEE-HHHHHHH
T ss_conf             564036887865661102575578874674023149999999999987400006677787504678538876-4467678


Q ss_pred             -HHHHHHCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -53210001123444---225788999999877775310013456--567872566788653344211579999999862
Q gi|254780575|r  180 -AYCFARKTIPVGSS---EGFFIEMCVLAIPALFYVVWNGFSGGE--HFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKR  253 (316)
Q Consensus       180 -~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~  253 (316)
T Consensus       169 afVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am-~ISgl~svgiSy~saWcvrV  247 (309)
T COG5070         169 AFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAM-FISGLCSVGISYCSAWCVRV  247 (309)
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHH-HHHHHHHHHHHHCCCEEEEE
T ss_conf             99999987621345320268998616788899988877513783002128885789999-99888773144413136764


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             586999999999999999999999788899899999999999999999999999877556
Q gi|254780575|r  254 AKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKT  313 (316)
Q Consensus       254 ~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~  313 (316)
T Consensus       248 tSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~~  307 (309)
T COG5070         248 TSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQKD  307 (309)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             025389998886417487755520588604888999999998779999998888842778