HHsearch alignment for GI: 254780575 and conserved domain: TIGR00776

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=98.17  E-value=0.00028  Score=40.23  Aligned_cols=274  Identities=12%  Similarity=0.078  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999963--8988999999999999999999999710000112210350011233434666887
Q gi|254780575|r   26 GTLFVFCAYILWGITPLYTQFLE--QVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAV  103 (316)
Q Consensus        26 G~~~~l~a~~lwg~~~~~~k~l~--~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (316)
T Consensus         2 ~il~aL~Pa~~WG~~~~~~~Kig~Wg~P~~q~lG~--t~GaLI~~i~~~~~~~p~~~~YY~~F~l~~~~~gl~sG~~Wal   79 (336)
T TIGR00776         2 DILIALLPALFWGSFVLINVKIGKWGKPASQTLGT--TFGALILSIIIAIIVLPEFTAYYSSFSLTIFLVGLISGAFWAL   79 (336)
T ss_pred             CHHHHHHHHHHHHEEHHHHHCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             43899987874411010111025887125578778--9999999999998718982254302124778889999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCH----H---HHHHHHHHHHHHHHHHCCCCCCH------
Q ss_conf             53346666533458999999-9769999999974202356437----9---99999998656556623688520------
Q gi|254780575|r  104 HWGFFIYALLTRQGFLTSFS-YFVTPVISVFLGSVFLKERLNH----L---QIIAALLIILSLLIMTLHSGIPL------  169 (316)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~g~~~~~~~~~~~~------  169 (316)
T Consensus        80 GQ~~q~~~~~~~GvS~tmPistG~QLv~~sL~gvivfgeW~~~~~~~~GRmt~lAl~liiiGv~lts~~GqL~~~~~~~~  159 (336)
T TIGR00776        80 GQINQFKSMRYIGVSKTMPISTGLQLVGGSLFGVIVFGEWSTSIQILLGRMTLLALILIIIGVYLTSISGQLKDKSAKIK  159 (336)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf             75458777764020220145664899987877530122447631013054999999999999999730212114553211


Q ss_pred             -----------HHHHH---HHHHHHHHHHHC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC------------
Q ss_conf             -----------57799---999865321000-------112344422578899999987777531001------------
Q gi|254780575|r  170 -----------LSLAI---AVTWSAYCFARK-------TIPVGSSEGFFIEMCVLAIPALFYVVWNGF------------  216 (316)
Q Consensus       170 -----------~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  216 (316)
T Consensus       160 ~e~~N~~Kg~~lLl~sGiF~~GY~~Y~~~a~PmHEAA~~~~vd~~~~~LPq~iGm~iGg~i~~~~~~~~RLAkv~~Ls~k  239 (336)
T TIGR00776       160 SEEFNLKKGILLLLVSGIFTIGYLVYVVVAKPMHEAAAALGVDGLSVLLPQAIGMVIGGIIFNLKHCFKRLAKVKDLSLK  239 (336)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             25354257899999987899999999860662678888824554566843488887778998756668877766531210


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH----HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----
Q ss_conf             -345656787256678865334421157999999-986----2586999999999999999999999788899899----
Q gi|254780575|r  217 -SGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSY-GIK----RAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVR----  286 (316)
Q Consensus       217 -~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~-a~~----~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~----  286 (316)
T Consensus       240 ADFs~~k~~~~~~~~lN-~~~Gl~w~~~~f~y~~~~qp~PAq~~Gvat~F~~SQ~~~i~stlGGI~~l~E~K~Kr~~~~~  318 (336)
T TIGR00776       240 ADFSLAKPLKKYAIWLN-ILSGLIWGIGNFFYLFSAQPIPAQKVGVATSFSLSQLGVIISTLGGILILGEKKTKRELIAI  318 (336)
T ss_pred             CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             11122015788999998-78899999999999998468710688999999999999999998788763037875200145


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q gi|254780575|r  287 TIVFGIVVIAMVVYLL  302 (316)
Q Consensus       287 ~iG~~lIi~gv~l~~~  302 (316)
T Consensus       319 ~~GiiliiiAa~~~g~  334 (336)
T TIGR00776       319 VVGIILIIIAAVILGI  334 (336)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             4578998878999875