HHsearch alignment for GI: 254780575 and conserved domain: TIGR00776
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=98.17 E-value=0.00028 Score=40.23 Aligned_cols=274 Identities=12% Similarity=0.078 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999963--8988999999999999999999999710000112210350011233434666887
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQFLE--QVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAV 103 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~l~--~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (316)
T Consensus 2 ~il~aL~Pa~~WG~~~~~~~Kig~Wg~P~~q~lG~--t~GaLI~~i~~~~~~~p~~~~YY~~F~l~~~~~gl~sG~~Wal 79 (336)
T TIGR00776 2 DILIALLPALFWGSFVLINVKIGKWGKPASQTLGT--TFGALILSIIIAIIVLPEFTAYYSSFSLTIFLVGLISGAFWAL 79 (336)
T ss_pred CHHHHHHHHHHHHEEHHHHHCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 43899987874411010111025887125578778--9999999999998718982254302124778889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCH----H---HHHHHHHHHHHHHHHHCCCCCCH------
Q ss_conf 53346666533458999999-9769999999974202356437----9---99999998656556623688520------
Q gi|254780575|r 104 HWGFFIYALLTRQGFLTSFS-YFVTPVISVFLGSVFLKERLNH----L---QIIAALLIILSLLIMTLHSGIPL------ 169 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~g~~~~~~~~~~~~------ 169 (316)
T Consensus 80 GQ~~q~~~~~~~GvS~tmPistG~QLv~~sL~gvivfgeW~~~~~~~~GRmt~lAl~liiiGv~lts~~GqL~~~~~~~~ 159 (336)
T TIGR00776 80 GQINQFKSMRYIGVSKTMPISTGLQLVGGSLFGVIVFGEWSTSIQILLGRMTLLALILIIIGVYLTSISGQLKDKSAKIK 159 (336)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 75458777764020220145664899987877530122447631013054999999999999999730212114553211
Q ss_pred -----------HHHHH---HHHHHHHHHHHC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC------------
Q ss_conf -----------57799---999865321000-------112344422578899999987777531001------------
Q gi|254780575|r 170 -----------LSLAI---AVTWSAYCFARK-------TIPVGSSEGFFIEMCVLAIPALFYVVWNGF------------ 216 (316)
Q Consensus 170 -----------~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 216 (316)
T Consensus 160 ~e~~N~~Kg~~lLl~sGiF~~GY~~Y~~~a~PmHEAA~~~~vd~~~~~LPq~iGm~iGg~i~~~~~~~~RLAkv~~Ls~k 239 (336)
T TIGR00776 160 SEEFNLKKGILLLLVSGIFTIGYLVYVVVAKPMHEAAAALGVDGLSVLLPQAIGMVIGGIIFNLKHCFKRLAKVKDLSLK 239 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 25354257899999987899999999860662678888824554566843488887778998756668877766531210
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH----HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----
Q ss_conf -345656787256678865334421157999999-986----2586999999999999999999999788899899----
Q gi|254780575|r 217 -SGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSY-GIK----RAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVR---- 286 (316)
Q Consensus 217 -~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~-a~~----~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~---- 286 (316)
T Consensus 240 ADFs~~k~~~~~~~~lN-~~~Gl~w~~~~f~y~~~~qp~PAq~~Gvat~F~~SQ~~~i~stlGGI~~l~E~K~Kr~~~~~ 318 (336)
T TIGR00776 240 ADFSLAKPLKKYAIWLN-ILSGLIWGIGNFFYLFSAQPIPAQKVGVATSFSLSQLGVIISTLGGILILGEKKTKRELIAI 318 (336)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 11122015788999998-78899999999999998468710688999999999999999998788763037875200145
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780575|r 287 TIVFGIVVIAMVVYLL 302 (316)
Q Consensus 287 ~iG~~lIi~gv~l~~~ 302 (316)
T Consensus 319 ~~GiiliiiAa~~~g~ 334 (336)
T TIGR00776 319 VVGIILIIIAAVILGI 334 (336)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 4578998878999875