HHsearch alignment for GI: 254780575 and conserved domain: TIGR00950

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=99.97  E-value=8e-28  Score=168.55  Aligned_cols=259  Identities=17%  Similarity=0.247  Sum_probs=193.3

Q ss_pred             HHHHHHHHHH-HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999-63-898899999999999999999999971000011221035001123343466688753346666533
Q gi|254780575|r   37 WGITPLYTQF-LE-QVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFIYALLT  114 (316)
Q Consensus        37 wg~~~~~~k~-l~-~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (316)
T Consensus         1 WG~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~l-L~~~~~~G~~il--~~~~~~~~~~~~l~g~~~~~~~~~~~f~a~~~   77 (275)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVLRRLIFGLLLL-LPLLRLRGDKIL--ILNPLKRLLRLLLLGALQIGVFYVLYFVAVKR   77 (275)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHCCCCEEE--EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             914454588762125217899999999999999-999866897078--75475238999999999999999999999887


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCHH------HHHHHHHHHHHHHH
Q ss_conf             -458999999976999999997420235643799999999865655662368---85205------77999998653210
Q gi|254780575|r  115 -RQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS---GIPLL------SLAIAVTWSAYCFA  184 (316)
Q Consensus       115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~------~~~~~~~~~~~~~~  184 (316)
T Consensus        78 ~~~v~~a~l~~~~~P~~~~~l~~l~~k~~~~~~~l~A~~l~l~G~~ll~~~~nP~~~~~~~~G~~~~~~s~~~~A~g~v~  157 (275)
T TIGR00950        78 TLPVGEAALLLYLAPLYVTLLSDLLGKERPRKLVLLAAVLGLAGAVLLLSDGNPSNLSINPAGLLLGLLSGISFALGTVL  157 (275)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             22079999999998999999999871568529999999999999988862788766652299999999999999999999


Q ss_pred             HCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             001123444--225788999999877775310013456567--8725667886533442115799999998625869999
Q gi|254780575|r  185 RKTIPVGSS--EGFFIEMCVLAIPALFYVVWNGFSGGEHFF--LGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVG  260 (316)
Q Consensus       185 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s  260 (316)
T Consensus       158 ~K~~~~~~~~~~~~~~~~~~l~~Gal~llp~~~~~~~~~~~~p~~~~~~g~~~yLg~~~t~l~y~l~~~Gl~~V~~~~a~  237 (275)
T TIGR00950       158 AKRLVKKEGPELLQFTGFGVLLIGALLLLPFAWLLGPNPQLLPATSLQWGALLYLGLIGTLLAYFLWNKGLTLVDPSAAS  237 (275)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             87520679874267899999999999999999984565011110246999999999999999999999876434704657


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999788899899999999999999
Q gi|254780575|r  261 IMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMV  298 (316)
Q Consensus       261 ~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~  298 (316)
T Consensus       238 ~l~~~~P~~a~LLg~~~~g~~l~~~~l~g~~~i~~~~l  275 (275)
T TIGR00950       238 ILALLEPLVALLLGLLILGETLSLIQLIGGALIIAAVL  275 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             76646689999999999730467989999999999829