HHsearch alignment for GI: 254780575 and conserved domain: TIGR00950
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=99.97 E-value=8e-28 Score=168.55 Aligned_cols=259 Identities=17% Similarity=0.247 Sum_probs=193.3
Q ss_pred HHHHHHHHHH-HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999-63-898899999999999999999999971000011221035001123343466688753346666533
Q gi|254780575|r 37 WGITPLYTQF-LE-QVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFIYALLT 114 (316)
Q Consensus 37 wg~~~~~~k~-l~-~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (316)
T Consensus 1 WG~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~l-L~~~~~~G~~il--~~~~~~~~~~~~l~g~~~~~~~~~~~f~a~~~ 77 (275)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVLRRLIFGLLLL-LPLLRLRGDKIL--ILNPLKRLLRLLLLGALQIGVFYVLYFVAVKR 77 (275)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHCCCCEEE--EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 914454588762125217899999999999999-999866897078--75475238999999999999999999999887
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCHH------HHHHHHHHHHHHHH
Q ss_conf -458999999976999999997420235643799999999865655662368---85205------77999998653210
Q gi|254780575|r 115 -RQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS---GIPLL------SLAIAVTWSAYCFA 184 (316)
Q Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~------~~~~~~~~~~~~~~ 184 (316)
T Consensus 78 ~~~v~~a~l~~~~~P~~~~~l~~l~~k~~~~~~~l~A~~l~l~G~~ll~~~~nP~~~~~~~~G~~~~~~s~~~~A~g~v~ 157 (275)
T TIGR00950 78 TLPVGEAALLLYLAPLYVTLLSDLLGKERPRKLVLLAAVLGLAGAVLLLSDGNPSNLSINPAGLLLGLLSGISFALGTVL 157 (275)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22079999999998999999999871568529999999999999988862788766652299999999999999999999
Q ss_pred HCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 001123444--225788999999877775310013456567--8725667886533442115799999998625869999
Q gi|254780575|r 185 RKTIPVGSS--EGFFIEMCVLAIPALFYVVWNGFSGGEHFF--LGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVG 260 (316)
Q Consensus 185 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s 260 (316)
T Consensus 158 ~K~~~~~~~~~~~~~~~~~~l~~Gal~llp~~~~~~~~~~~~p~~~~~~g~~~yLg~~~t~l~y~l~~~Gl~~V~~~~a~ 237 (275)
T TIGR00950 158 AKRLVKKEGPELLQFTGFGVLLIGALLLLPFAWLLGPNPQLLPATSLQWGALLYLGLIGTLLAYFLWNKGLTLVDPSAAS 237 (275)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 87520679874267899999999999999999984565011110246999999999999999999999876434704657
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999788899899999999999999
Q gi|254780575|r 261 IMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMV 298 (316)
Q Consensus 261 ~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~ 298 (316)
T Consensus 238 ~l~~~~P~~a~LLg~~~~g~~l~~~~l~g~~~i~~~~l 275 (275)
T TIGR00950 238 ILALLEPLVALLLGLLILGETLSLIQLIGGALIIAAVL 275 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 76646689999999999730467989999999999829