HHsearch alignment for GI: 254780575 and conserved domain: TIGR03340

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

Probab=98.89  E-value=3.7e-08  Score=61.38  Aligned_cols=87  Identities=16%  Similarity=0.148  Sum_probs=70.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             67872566788653344211579999999862586999999999999999999999788899899999999999999999
Q gi|254780575|r  222 FFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL  301 (316)
Q Consensus       222 ~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~  301 (316)
T Consensus        56 p~p~~~-~w~~i~~S~~~h~~Y~~~L~~aY~~gdls~vYPiaRgsPllv~l~a~l~lgE~ls~~~~~Gi~li~~Gi~~l~  134 (281)
T TIGR03340        56 SRLPAT-FWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             998678-9999999999999999999999835884111106415769999999999747688989999999999999984


Q ss_pred             HHHHHHHH
Q ss_conf             99999987
Q gi|254780575|r  302 LPTVINSG  309 (316)
Q Consensus       302 ~~~~~~~~  309 (316)
T Consensus       135 ~~~~~~~~  142 (281)
T TIGR03340       135 LSRFAQHR  142 (281)
T ss_pred             HHHCCCCC
T ss_conf             01203566