Query gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 316
No_of_seqs 200 out of 5855
Neff 10.4
Searched_HMMs 39220
Date Mon May 30 00:23:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780575.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2962 RarD Predicted permeas 100.0 1.7E-36 4.3E-41 215.9 29.2 290 21-312 3-293 (293)
2 PRK11272 hypothetical protein; 100.0 6.7E-35 1.7E-39 207.1 31.0 277 21-306 5-291 (293)
3 PRK11453 O-acetylserine/cystei 100.0 7.5E-35 1.9E-39 206.9 31.0 269 24-304 3-289 (299)
4 PRK11689 hypothetical protein; 100.0 9.6E-32 2.4E-36 189.9 28.7 275 23-308 2-293 (295)
5 TIGR00950 2A78 Carboxylate/Ami 100.0 8E-28 2E-32 168.6 25.3 259 37-298 1-275 (275)
6 PRK10532 threonine and homoser 100.0 5.5E-26 1.4E-30 158.5 25.6 281 15-312 2-291 (293)
7 COG0697 RhaT Permeases of the 99.9 9.8E-23 2.5E-27 140.8 30.8 276 20-303 2-288 (292)
8 COG5006 rhtA Threonine/homoser 99.8 1.2E-18 3.1E-23 118.5 20.7 277 15-305 2-285 (292)
9 KOG4510 consensus 99.8 2E-21 5E-26 133.7 2.2 294 11-315 24-338 (346)
10 TIGR03340 phn_DUF6 phosphonate 99.7 1.9E-14 4.8E-19 95.7 24.8 270 26-300 2-281 (281)
11 TIGR00688 rarD RarD protein; I 99.7 9.8E-14 2.5E-18 91.8 22.4 253 25-277 2-258 (259)
12 pfam00892 EamA EamA-like trans 99.6 1E-14 2.6E-19 97.1 12.7 122 179-301 4-125 (126)
13 pfam08449 UAA UAA transporter 99.5 8.5E-11 2.2E-15 75.8 23.5 270 30-306 8-301 (303)
14 pfam06027 DUF914 Eukaryotic pr 99.4 3.7E-11 9.4E-16 77.7 17.3 281 20-306 8-309 (335)
15 pfam00892 EamA EamA-like trans 99.3 6.7E-11 1.7E-15 76.3 12.2 124 35-162 1-125 (126)
16 COG2510 Predicted membrane pro 99.2 1.3E-11 3.2E-16 80.3 6.0 77 224-301 62-138 (140)
17 KOG2765 consensus 99.2 2.6E-10 6.6E-15 73.1 10.0 211 100-310 168-398 (416)
18 COG2510 Predicted membrane pro 99.1 6.9E-10 1.8E-14 70.8 8.5 134 26-162 4-138 (140)
19 KOG1441 consensus 98.9 5.1E-09 1.3E-13 66.1 8.4 259 44-308 36-313 (316)
20 TIGR03340 phn_DUF6 phosphonate 98.9 3.7E-08 9.5E-13 61.4 11.3 87 222-309 56-142 (281)
21 KOG2234 consensus 98.9 2.8E-06 7.1E-11 51.2 25.5 281 26-307 16-327 (345)
22 PRK11272 hypothetical protein; 98.9 3.1E-07 8E-12 56.3 15.7 141 21-164 148-288 (293)
23 pfam04142 Nuc_sug_transp Nucle 98.8 1.7E-06 4.2E-11 52.4 16.7 203 91-293 17-238 (238)
24 PRK11453 O-acetylserine/cystei 98.8 1.6E-06 4.1E-11 52.4 15.9 146 20-165 138-289 (299)
25 KOG1443 consensus 98.7 2.8E-06 7.2E-11 51.1 15.2 278 23-300 13-313 (349)
26 KOG1581 consensus 98.7 4.1E-06 1.1E-10 50.2 15.8 215 101-315 93-326 (327)
27 KOG1444 consensus 98.7 1.6E-05 4E-10 47.1 21.4 206 105-311 91-309 (314)
28 COG0697 RhaT Permeases of the 98.6 3.2E-06 8.1E-11 50.9 13.8 79 229-307 69-148 (292)
29 PRK02971 hypothetical protein; 98.4 3.9E-07 1E-11 55.8 5.3 79 228-306 46-126 (129)
30 TIGR00950 2A78 Carboxylate/Ami 98.4 3.4E-05 8.8E-10 45.2 14.0 138 19-158 133-274 (275)
31 PRK11689 hypothetical protein; 98.3 6E-05 1.5E-09 43.9 14.7 131 23-161 154-285 (295)
32 PRK10452 multidrug efflux syst 98.2 3.6E-06 9.2E-11 50.6 6.6 76 237-312 37-113 (120)
33 COG2962 RarD Predicted permeas 98.2 3.2E-05 8.3E-10 45.3 10.7 76 229-304 71-146 (293)
34 KOG1580 consensus 98.2 6.9E-06 1.8E-10 49.0 7.1 177 126-305 120-316 (337)
35 TIGR00776 RhaT RhaT L-rhamnose 98.2 0.00028 7.2E-09 40.2 20.5 274 26-302 2-334 (336)
36 COG5070 VRG4 Nucleotide-sugar 98.1 0.00031 8E-09 40.0 15.2 199 113-313 90-307 (309)
37 pfam05653 DUF803 Protein of un 98.1 0.00024 6.1E-09 40.6 14.2 258 20-302 2-292 (300)
38 pfam06800 Sugar_transport Suga 98.0 0.00016 4.1E-09 41.6 11.8 197 96-299 49-267 (268)
39 pfam03151 TPT Triose-phosphate 98.0 0.00029 7.5E-09 40.1 13.1 72 230-301 77-148 (149)
40 PRK09541 emrE multidrug efflux 98.0 5.1E-05 1.3E-09 44.3 8.6 69 236-304 36-105 (110)
41 PRK10650 multidrug efflux syst 97.9 5.3E-05 1.4E-09 44.2 7.9 67 236-302 41-108 (109)
42 pfam08449 UAA UAA transporter 97.9 0.00094 2.4E-08 37.4 16.9 147 18-164 147-298 (303)
43 COG2076 EmrE Membrane transpor 97.9 0.00013 3.3E-09 42.1 9.2 68 236-303 36-104 (106)
44 pfam03151 TPT Triose-phosphate 97.9 0.0011 2.9E-08 36.9 14.7 136 26-161 1-147 (149)
45 PRK10532 threonine and homoser 97.9 0.0012 3E-08 36.9 14.2 136 21-162 144-280 (293)
46 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00053 1.3E-08 38.8 10.9 66 238-303 75-148 (336)
47 PRK11431 quaternary ammonium c 97.7 0.00018 4.5E-09 41.3 7.5 67 237-303 36-103 (105)
48 pfam06027 DUF914 Eukaryotic pr 97.7 0.0024 6E-08 35.2 13.2 144 20-165 163-307 (335)
49 KOG4510 consensus 97.5 2E-05 5E-10 46.5 -0.1 71 233-303 100-170 (346)
50 COG4975 GlcU Putative glucose 97.5 4.4E-05 1.1E-09 44.6 1.5 261 25-301 2-284 (288)
51 pfam05653 DUF803 Protein of un 97.4 1.4E-05 3.6E-10 47.3 -1.3 34 24-57 54-89 (300)
52 KOG1583 consensus 97.4 0.00069 1.8E-08 38.1 7.0 189 127-315 101-328 (330)
53 KOG1442 consensus 97.3 0.00025 6.3E-09 40.5 3.5 189 127-316 138-341 (347)
54 KOG2766 consensus 97.2 0.00011 2.7E-09 42.5 1.4 276 20-310 13-307 (336)
55 pfam04142 Nuc_sug_transp Nucle 97.2 0.0014 3.6E-08 36.4 6.9 54 23-79 13-70 (238)
56 KOG1582 consensus 97.1 0.012 3E-07 31.4 14.6 174 131-304 146-334 (367)
57 pfam06800 Sugar_transport Suga 96.9 0.0082 2.1E-07 32.2 8.6 128 20-159 132-262 (268)
58 KOG2765 consensus 96.9 0.018 4.6E-07 30.4 11.2 24 22-45 11-34 (416)
59 KOG2922 consensus 96.8 0.0058 1.5E-07 33.1 6.6 254 20-300 16-304 (335)
60 pfam00893 Multi_Drug_Res Small 96.8 0.0077 2E-07 32.4 7.2 57 237-293 36-93 (93)
61 KOG1441 consensus 96.7 0.026 6.7E-07 29.5 10.5 116 197-312 50-187 (316)
62 pfam04657 DUF606 Protein of un 96.3 0.052 1.3E-06 27.9 10.9 63 236-298 71-138 (139)
63 KOG2922 consensus 96.2 0.00024 6.2E-09 40.6 -3.1 37 245-283 273-309 (335)
64 TIGR00817 tpt Tpt phosphate/ph 96.1 0.057 1.5E-06 27.6 8.4 277 25-306 3-337 (346)
65 KOG3912 consensus 95.8 0.086 2.2E-06 26.7 18.7 198 105-302 100-334 (372)
66 TIGR00817 tpt Tpt phosphate/ph 95.8 0.088 2.2E-06 26.6 14.0 119 188-307 26-148 (346)
67 KOG2234 consensus 95.6 0.058 1.5E-06 27.6 6.7 40 26-65 91-134 (345)
68 COG4975 GlcU Putative glucose 95.3 0.0064 1.6E-07 32.8 1.0 79 223-302 53-136 (288)
69 KOG4314 consensus 95.2 0.0097 2.5E-07 31.8 1.8 202 104-306 66-280 (290)
70 KOG4314 consensus 94.8 0.091 2.3E-06 26.6 5.8 25 35-59 61-86 (290)
71 pfam10639 UPF0546 Uncharacteri 93.5 0.069 1.8E-06 27.2 3.0 39 122-160 72-110 (112)
72 COG3086 RseC Positive regulato 93.2 0.39 9.9E-06 23.1 6.5 64 250-314 68-131 (150)
73 pfam04246 RseC_MucC Positive r 92.4 0.43 1.1E-05 22.9 5.8 63 251-314 62-124 (135)
74 TIGR00803 nst UDP-galactose tr 90.6 0.83 2.1E-05 21.3 17.1 168 133-300 41-235 (235)
75 pfam04342 DUF486 Protein of un 87.3 0.89 2.3E-05 21.2 3.9 31 270-300 76-106 (108)
76 MTH00057 ND6 NADH dehydrogenas 85.2 1.9 4.8E-05 19.4 6.9 25 273-297 132-156 (184)
77 TIGR01478 STEVOR variant surfa 82.4 2.5 6.3E-05 18.7 6.8 20 24-43 185-204 (315)
78 PRK06638 NADH dehydrogenase su 81.5 2.7 6.8E-05 18.6 7.1 21 274-294 134-154 (196)
79 pfam05297 Herpes_LMP1 Herpesvi 80.5 2.9 7.5E-05 18.3 8.0 50 25-78 27-76 (382)
80 COG3169 Uncharacterized protei 80.3 3 7.5E-05 18.3 5.2 34 268-301 81-114 (116)
81 TIGR01477 RIFIN variant surfac 79.8 3.1 7.9E-05 18.2 5.3 44 257-314 343-386 (395)
82 MTH00021 ND6 NADH dehydrogenas 79.4 3.2 8.1E-05 18.2 4.9 22 273-294 133-154 (187)
83 pfam07857 DUF1632 CEO family ( 79.0 1.5 3.8E-05 19.9 2.3 29 26-54 1-29 (254)
84 pfam06379 RhaT L-rhamnose-prot 78.9 3.3 8.4E-05 18.1 18.3 281 20-303 2-341 (344)
85 PRK10655 potE putrescine trans 78.9 3.3 8.4E-05 18.1 16.7 50 263-312 387-436 (438)
86 PRK13499 rhamnose-proton sympo 78.6 3.4 8.6E-05 18.0 16.8 283 20-303 2-342 (345)
87 PRK10862 SoxR reducing system 77.3 3.7 9.4E-05 17.8 5.9 40 252-291 70-111 (158)
88 PRK12437 prolipoprotein diacyl 73.5 4.7 0.00012 17.2 18.0 32 281-312 233-264 (269)
89 PRK12554 undecaprenyl pyrophos 72.3 5 0.00013 17.1 5.2 43 229-271 222-264 (277)
90 TIGR00710 efflux_Bcr_CflA drug 64.9 7.3 0.00019 16.2 5.9 36 221-256 241-276 (400)
91 PTZ00042 stevor; Provisional 63.9 7.6 0.00019 16.1 3.5 43 264-312 250-292 (304)
92 COG3238 Uncharacterized protei 62.0 8.2 0.00021 15.9 13.8 21 138-158 121-141 (150)
93 pfam02694 UPF0060 Uncharacteri 61.9 8.3 0.00021 15.9 4.6 37 127-163 67-103 (107)
94 KOG4831 consensus 61.8 4 0.0001 17.6 1.3 34 127-160 89-122 (125)
95 PRK02237 hypothetical protein; 60.8 8.7 0.00022 15.8 4.5 37 127-163 68-104 (108)
96 pfam00873 ACR_tran AcrB/AcrD/A 59.1 9.3 0.00024 15.6 10.1 56 245-301 875-932 (1021)
97 pfam03203 MerC MerC mercury re 52.8 12 0.00031 15.0 6.5 30 224-256 35-64 (115)
98 PRK10614 multidrug efflux syst 49.8 13 0.00034 14.7 9.5 54 247-301 865-920 (1025)
99 PRK11357 frlA putative fructos 46.6 15 0.00038 14.5 10.3 51 262-312 389-443 (445)
100 PRK09579 multidrug efflux prot 45.4 16 0.0004 14.3 10.7 56 245-301 857-914 (1017)
101 PRK10209 acid-resistance membr 44.2 17 0.00042 14.2 10.4 28 11-38 13-40 (190)
102 PRK09577 multidrug efflux prot 42.4 18 0.00045 14.1 10.5 51 250-301 883-935 (1032)
103 pfam02009 Rifin_STEVOR Rifin/s 41.0 19 0.00048 14.0 6.5 45 256-314 236-280 (289)
104 PRK04201 zinc transporter ZupT 39.2 20 0.00051 13.8 7.2 72 242-314 167-240 (263)
105 pfam02673 BacA Bacitracin resi 37.9 21 0.00053 13.7 8.0 12 66-77 48-59 (255)
106 pfam07444 Ycf66_N Ycf66 protei 37.2 21 0.00055 13.6 3.0 10 24-33 10-19 (84)
107 KOG1631 consensus 31.3 27 0.00069 13.1 3.2 33 279-311 182-214 (261)
108 PRK05760 F0F1 ATP synthase sub 30.7 28 0.00071 13.0 6.2 67 229-295 33-109 (124)
109 TIGR02357 thia_yuaJ probable p 26.8 33 0.00083 12.6 8.8 50 22-72 45-96 (187)
110 PRK10555 aminoglycoside/multid 26.5 33 0.00084 12.6 10.0 51 250-301 887-939 (1037)
111 COG0597 LspA Lipoprotein signa 26.3 33 0.00085 12.6 2.6 17 144-160 97-113 (167)
112 PRK10490 sensor protein KdpD; 21.7 41 0.0011 12.1 4.3 11 23-33 398-408 (895)
113 PRK10133 L-fucose transporter; 21.7 41 0.0011 12.1 26.3 155 1-159 1-171 (438)
114 TIGR00883 2A0106 MFS transport 21.4 42 0.0011 12.0 1.8 35 46-81 158-194 (413)
115 PRK12671 putative monovalent c 21.2 42 0.0011 12.0 9.6 48 252-299 42-89 (120)
116 PRK13024 bifunctional preprote 20.6 44 0.0011 11.9 6.1 29 263-291 678-709 (741)
No 1
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=215.85 Aligned_cols=290 Identities=31% Similarity=0.580 Sum_probs=263.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 52779999999999999999999999638988999999999999999999999710000112210350011233434666
Q gi|254780575|r 21 LPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATI 100 (316)
Q Consensus 21 ~~~~~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (316)
+...+|+++++.|+++||..|.+.|++++.|+.|+..+|.+++.++++.++...|++.. .++..+++..+......+..
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~-~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRE-LKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHH
T ss_conf 74322216999999999899999999714898899999999999999999999850289-99998390999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q ss_conf 8875334666653345899999997699999999742023564379999999986565566236-885205779999986
Q gi|254780575|r 101 LAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH-SGIPLLSLAIAVTWS 179 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~ 179 (316)
+..++..+..+..++.+..++.-++.+|++.+.++..+.|||+++.++++++++.+|+...... ++.++.....+.++.
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~ 161 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFG 161 (293)
T ss_pred HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99777875053179853688767999899999999999971446889999999999999999980898599999999999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 53210001123444225788999999877775310013456567872566788653344211579999999862586999
Q gi|254780575|r 180 AYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTV 259 (316)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~ 259 (316)
.|...+|..+.+...+...++......+..+........+ ....+....+.++...+..|+++..+|..+-|++|-+..
T Consensus 162 ~Ygl~RK~~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~-~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~ 240 (293)
T COG2962 162 LYGLLRKKLKVDALTGLTLETLLLLPVALIYLLFLADSGQ-FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTL 240 (293)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999998637860776899999996999999999823732-664177418999999638889899999999752778999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999978889989999999999999999999999987755
Q gi|254780575|r 260 GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 260 s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
+.++|.||..-.+++++++||+++..+++..++|..|+++++.|..++.||+|
T Consensus 241 G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~~ 293 (293)
T COG2962 241 GFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKKR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998799999999999817899889999999999999999889999875039
No 2
>PRK11272 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-35 Score=207.14 Aligned_cols=277 Identities=12% Similarity=0.137 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHH-HHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 527799999999-99999999999999-6389889999999999999999999997100001122103500112334346
Q gi|254780575|r 21 LPTMMGTLFVFC-AYILWGITPLYTQF-LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSA 98 (316)
Q Consensus 21 ~~~~~G~~~~l~-a~~lwg~~~~~~k~-l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (316)
.++.+-+..++. .+++||+++++.|. ++++||..++..|+.++.+.++.+....+++.+..++ .+. . .....
T Consensus 5 ~~~~~p~~~all~~~~iWG~~f~~~K~~l~~~~P~~~~~~Rf~~a~~~ll~~~~~~~~~~~~~~~-~~~---~--~~~g~ 78 (293)
T PRK11272 5 FRQLLPLFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGGLLFAFLRLRGHPLPTLRQ-WLN---A--ALIGL 78 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHH---H--HHHHH
T ss_conf 88799999999999999977999999998447899999999999999999999997688886689-999---9--99999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH------H
Q ss_conf 6688753-34666653345899999997699999999742023564379999999986565566236885205------7
Q gi|254780575|r 99 TILAVHW-GFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLL------S 171 (316)
Q Consensus 99 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~ 171 (316)
....... .......++++...+..+....|+++.+.++. .+||+++.++.++.+++.|+.....+++.... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~ss~~a~ii~~~~Pi~~~l~~~l-f~er~~~~~~~gl~l~~~Gv~ll~~~~~~~~~~~G~~l~ 157 (293)
T PRK11272 79 LLLAVGNGLVTVAEHQNVPSGIAAVVVATVPLFTLLFSRL-FGIRTRKLEWAGIAIGLAGIILLNSGSNLSGNPWGAILI 157 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 9999999999999998754889999998879999999987-377784999999999999899981687321226899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999998653210001123444225788999999877775-310013456567872566788653344211579999999
Q gi|254780575|r 172 LAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYV-VWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYG 250 (316)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a 250 (316)
...+.+++.+....++...+ .+................ ............++...|..++++++++|+++|.+|+++
T Consensus 158 l~aa~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~g~~ll~~~~~~~~~~~~~~~~~~~~~l~yl~i~~t~iay~l~~~~ 235 (293)
T PRK11272 158 LIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYL 235 (293)
T ss_pred HHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999871678--8889999999999999999999874765456789999999999999999999999999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86258699999999999999999999978889989999999999999999999999
Q gi|254780575|r 251 IKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVI 306 (316)
Q Consensus 251 ~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~ 306 (316)
+|+.+++++|.+.++||++++++|++++||+++..+++|+++|+.|+++++..+++
T Consensus 236 l~~~~~~~as~~~~l~Pv~a~l~g~~~LgE~l~~~~~iG~~lIl~gv~lv~~~k~~ 291 (293)
T PRK11272 236 LRNVRPALATSYAYVNPVVAVLLGTGLGGERLSPIEWLALGVIVFAVVLVTLGKYL 291 (293)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99749999999998999999999999939988699999999999999999272105
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=7.5e-35 Score=206.86 Aligned_cols=269 Identities=14% Similarity=0.172 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999-63898899999999999999999999971000011221035001123343466688
Q gi|254780575|r 24 MMGTLFVFCAYILWGITPLYTQF-LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILA 102 (316)
Q Consensus 24 ~~G~~~~l~a~~lwg~~~~~~k~-l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (316)
++..++++..+++||++++..|. +++.||..+.++|+.++...++.... +++.+. +. ....... ...
T Consensus 3 ~k~~lL~l~~~~iWG~~f~~~K~~l~~~~Pl~~a~lRf~la~~~ll~~~~--~~~~~~-----~~---~~~~~l~--~~~ 70 (299)
T PRK11453 3 RKDGVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA--RPKVPL-----NL---LLGYGLT--ISF 70 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCH-----HH---HHHHHHH--HHH
T ss_conf 89999999999999878999999982799999999999999999999998--325857-----99---9999999--999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--------HHHHH
Q ss_conf 753346666533-458999999976999999997420235643799999999865655662368852--------05779
Q gi|254780575|r 103 VHWGFFIYALLT-RQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIP--------LLSLA 173 (316)
Q Consensus 103 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~ 173 (316)
..+...+.+..+ .+...++.+....|+++.+++....+||+++.++.++.+++.|+.....+.... .....
T Consensus 71 ~~~~~~~~~~~~~~~ag~aali~~~~P~~~~lla~~~l~Erl~~~~~~Gi~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~ 150 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLA 150 (299)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999828388999999989999999999986898868899999999998886523786755120899999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999986532100011234442--25788999999877775310013------4565678725667886533442115799
Q gi|254780575|r 174 IAVTWSAYCFARKTIPVGSSE--GFFIEMCVLAIPALFYVVWNGFS------GGEHFFLGNIPDTLFLIGYGLLNSFVFC 245 (316)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~t~i~~~ 245 (316)
.+++++.+....++...+... ....+..........+....... .+...+.+...|..++++++++|.++|.
T Consensus 151 a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~llyl~i~~s~lay~ 230 (299)
T PRK11453 151 AAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYG 230 (299)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999981178224999999999999999999999975831211100148889999999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999862586999999999999999999999788899899999999999999999999
Q gi|254780575|r 246 IFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPT 304 (316)
Q Consensus 246 ~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~ 304 (316)
+|++++|+.++++++.+.|++|++++++|++++||++++.+++|+++|+.|+++.+...
T Consensus 231 ~w~~~l~~~~a~~~s~~~~l~Pv~av~~g~llLgE~lt~~~~iG~~lil~Gv~l~~~~~ 289 (299)
T PRK11453 231 IWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999996689999999999989999999999199997999999999999999994461
No 4
>PRK11689 hypothetical protein; Provisional
Probab=100.00 E-value=9.6e-32 Score=189.93 Aligned_cols=275 Identities=16% Similarity=0.152 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 779999999999999999999999-6389889999999999999999999997100001122103500112334346668
Q gi|254780575|r 23 TMMGTLFVFCAYILWGITPLYTQF-LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATIL 101 (316)
Q Consensus 23 ~~~G~~~~l~a~~lwg~~~~~~k~-l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (316)
+.+..++.+.|.++||++.+..|. ++++||.++.++|+.++.+++++.. +..+. ++..++.. ...........
T Consensus 2 ~~~at~~gl~AillWst~~~~~k~~~~~~~P~~l~~~~~~ia~l~l~~~~----~~~~~-r~~~~~~l-~~g~~lf~~y~ 75 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLILTV----GFPRL-RGFPKRYL-IAGGLLFVSYE 75 (295)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----CCHHH-HHCCHHHH-HHHHHHHHHHH
T ss_conf 26899999999999997999999986238989999999999999999996----43043-12479999-99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-------------
Q ss_conf 8753346666533458999999976999999997420235643799999999865655662368852-------------
Q gi|254780575|r 102 AVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIP------------- 168 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------- 168 (316)
..++.....+.......++..+.+..|+++++++....+||+++.++.+..+++.|+.....+++..
T Consensus 76 ~~~~~~l~~a~~~~~a~~a~lIny~wPl~~~l~a~~~~~e~~~~~~~~g~~~~~~Gv~lv~~g~~~l~~~~~~~~~~~np 155 (295)
T PRK11689 76 ICLALSLGYANTRHQAIEVGMVNYLWPSLTILFAVLFNGQKANWLIIPGLLLALVGVCWVLGGDQGLSLDELIANIASNP 155 (295)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC
T ss_conf 99999998722431359999999998999999999974787649999999999997998562897566788761112360
Q ss_pred ---HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ---05779999986532100011234442257889999998777753100134565678725667886533442115799
Q gi|254780575|r 169 ---LLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFC 245 (316)
Q Consensus 169 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~ 245 (316)
......++.|+.|....++...+.. .... .....+...........+....++...+. .++.++.+++++|.
T Consensus 156 lG~~Lal~aal~Wa~Ysvl~rr~~~~~~-~v~~---~~~~~a~~l~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~g~af~ 230 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCTVTKKYANGKN-GITL---FFLLTALALWIKYFLSGQPAMVFSLPAII-KLLLAAAAMGFGYA 230 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHH---HHHHHHHHHHHHHHHCCCCCCCCCHHHHH-HHHHHHHHHHHHHH
T ss_conf 6799999999999999999998248885-0899---99999999999999658865677899999-99999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998625869999999999999999999997888998999999999999999999999998
Q gi|254780575|r 246 IFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINS 308 (316)
Q Consensus 246 ~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~ 308 (316)
+|++++|+.++++++.+.|++|+++.+++++++||++++.+++|+++|+.|..+....+.||+
T Consensus 231 ~W~~al~~~~a~~~a~l~yl~Pv~S~ll~~l~L~e~lt~~~~~G~~lI~~G~ll~~~~~r~~~ 293 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSSALAALLLSTPLSFSFWQGAAMVTAGSLLCWLATRRKR 293 (295)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999715899999999999999999999996687529999999999999999999972457
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=99.97 E-value=8e-28 Score=168.55 Aligned_cols=259 Identities=17% Similarity=0.247 Sum_probs=193.3
Q ss_pred HHHHHHHHHH-HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999-63-898899999999999999999999971000011221035001123343466688753346666533
Q gi|254780575|r 37 WGITPLYTQF-LE-QVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFIYALLT 114 (316)
Q Consensus 37 wg~~~~~~k~-l~-~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (316)
||+++.+.+. ++ +.|....++.|..++.+.+ +.....|+.... ....++.............+..+..++.+...
T Consensus 1 WG~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~l-L~~~~~~G~~il--~~~~~~~~~~~~l~g~~~~~~~~~~~f~a~~~ 77 (275)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVLRRLIFGLLLL-LPLLRLRGDKIL--ILNPLKRLLRLLLLGALQIGVFYVLYFVAVKR 77 (275)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHCCCCEEE--EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 914454588762125217899999999999999-999866897078--75475238999999999999999999999887
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCHH------HHHHHHHHHHHHHH
Q ss_conf -458999999976999999997420235643799999999865655662368---85205------77999998653210
Q gi|254780575|r 115 -RQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS---GIPLL------SLAIAVTWSAYCFA 184 (316)
Q Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~------~~~~~~~~~~~~~~ 184 (316)
..+..+.......|+.+..+.+...|+|+++..++++.++++|.....+++ ..... ....+.+++.+...
T Consensus 78 ~~~v~~a~l~~~~~P~~~~~l~~l~~k~~~~~~~l~A~~l~l~G~~ll~~~~nP~~~~~~~~G~~~~~~s~~~~A~g~v~ 157 (275)
T TIGR00950 78 TLPVGEAALLLYLAPLYVTLLSDLLGKERPRKLVLLAAVLGLAGAVLLLSDGNPSNLSINPAGLLLGLLSGISFALGTVL 157 (275)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22079999999998999999999871568529999999999999988862788766652299999999999999999999
Q ss_pred HCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 001123444--225788999999877775310013456567--8725667886533442115799999998625869999
Q gi|254780575|r 185 RKTIPVGSS--EGFFIEMCVLAIPALFYVVWNGFSGGEHFF--LGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVG 260 (316)
Q Consensus 185 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s 260 (316)
.|+...+.. .............++.+........+.... .....|...+++++++|.++|.+|++++|.++++++|
T Consensus 158 ~K~~~~~~~~~~~~~~~~~~l~~Gal~llp~~~~~~~~~~~~p~~~~~~g~~~yLg~~~t~l~y~l~~~Gl~~V~~~~a~ 237 (275)
T TIGR00950 158 AKRLVKKEGPELLQFTGFGVLLIGALLLLPFAWLLGPNPQLLPATSLQWGALLYLGLIGTLLAYFLWNKGLTLVDPSAAS 237 (275)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 87520679874267899999999999999999984565011110246999999999999999999999876434704657
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999788899899999999999999
Q gi|254780575|r 261 IMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMV 298 (316)
Q Consensus 261 ~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~ 298 (316)
++.++||+.|.+++++++||++|..||+|+++|+.|++
T Consensus 238 ~l~~~~P~~a~LLg~~~~g~~l~~~~l~g~~~i~~~~l 275 (275)
T TIGR00950 238 ILALLEPLVALLLGLLILGETLSLIQLIGGALIIAAVL 275 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 76646689999999999730467989999999999829
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=5.5e-26 Score=158.53 Aligned_cols=281 Identities=16% Similarity=0.136 Sum_probs=191.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHH
Q ss_conf 744014527799999999999999999999996-3898899999999999999999999971000011221035001123
Q gi|254780575|r 15 SKENASLPTMMGTLFVFCAYILWGITPLYTQFL-EQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGM 93 (316)
Q Consensus 15 ~~~~~~~~~~~G~~~~l~a~~lwg~~~~~~k~l-~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
.-...+.+..+.+++++.+.+.+.....+.|.+ +.++|..++++|..+++..++. +.|.+++.. ..++ +..
T Consensus 2 ~~~~~~~~~~lp~ll~l~s~~s~q~gaa~A~~Lf~~~g~~gv~~lRl~~aAlvL~~---i~RP~~~~~--~r~~---~~~ 73 (293)
T PRK10532 2 PGSLRKLPVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIA---FFKPWRLRF--AKEQ---RLP 73 (293)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---HHCCCCCCC--CHHH---HHH
T ss_conf 99766784268999999999998735999999863158688899999999999999---986433566--7889---999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC----CCH
Q ss_conf 3434666887533466665334589999999769999999974202356437999999998656556623688----520
Q gi|254780575|r 94 LVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSG----IPL 169 (316)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~ 169 (316)
....+..+......+|.+........+..+.+.-|+....+... + +.....+.++..|+......++ .+.
T Consensus 74 ~l~~G~~la~MN~~fy~Ai~riplG~AV~iEFlGPl~vA~~~sr----~--~~d~~w~~lA~~Gv~ll~~~~~~~~~~d~ 147 (293)
T PRK10532 74 LLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSR----R--PVDFVWVVLAVLGLWFLLPLGQDVSHVDL 147 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC----C--HHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 99999999999999999998654058887762479999999647----5--89999999999999974034677675566
Q ss_pred ----HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----5779999986532100011234442257889999998777753100134565678725667886533442115799
Q gi|254780575|r 170 ----LSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFC 245 (316)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~ 245 (316)
.....+.+|+.|+...++..... +............... .+...........+...+...+..++++|.++|.
T Consensus 148 ~Gv~~aL~Aa~~wA~Yil~~~r~~~~~--~~~~la~~~~vaa~~~-~p~~~~~~~~~~~~~~~l~~~l~vavlssviPY~ 224 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAEH--GPATVAVGSLIAALIF-VPIGALQAGEALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999964732568--8402699999999999-9888760453327889999999999998789999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999986258699999999999999999999978889989999999999999999999999987755
Q gi|254780575|r 246 IFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 246 ~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
+.+.++||+++...+++..+||+++.+.|+++|||++++.|++|+.+|+.+.+..++...|+.|++|
T Consensus 225 Le~~aLrrl~a~~fgvL~slePa~Aal~G~llLgE~ls~~q~lGialVv~As~g~~lt~~r~p~~~~ 291 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE 291 (293)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999985378879999999889999999999956889799999999999999999970578987667
No 7
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.94 E-value=9.8e-23 Score=140.82 Aligned_cols=276 Identities=19% Similarity=0.260 Sum_probs=191.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 452779999999999999999999999-638-988999999999999999999999710000112210350011233434
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQF-LEQ-VSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFS 97 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~-l~~-~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (316)
++....+.++.+..++.|+......|. .++ .++....+.|...+... . ....++++...++..++ ........
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~--~~~~~~~~ 76 (292)
T COG0697 2 KRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL--L-LPLLLLEPRGLRPALRP--WLLLLLLA 76 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--H-HHHHHHCCCCCCCCHHH--HHHHHHHH
T ss_conf 4105999999999999999999999998501231999999999999999--9-99987222322320258--99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH----H-
Q ss_conf 666887533466665334589999999769999999974-2023564379999999986565566236885205----7-
Q gi|254780575|r 98 ATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGS-VFLKERLNHLQIIAALLIILSLLIMTLHSGIPLL----S- 171 (316)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~- 171 (316)
..........++.+..+.+...+.....+.|+++...+. ...+||.++.++.+...+..|+.....++..... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ll~~~~~~~e~~~~~~~~~~~~~~~Gv~li~~~~~~~~~~~~~g~ 156 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGL 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999999999985319999999999999999999999848877599999999999889864115532220248999
Q ss_pred ---HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---79999986532100011234442257889999998777753100134565678725667886533442115799999
Q gi|254780575|r 172 ---LAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFS 248 (316)
Q Consensus 172 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~ 248 (316)
...++.++.+....++.. .................... ............+...|....+.+.+.+.+++.+|+
T Consensus 157 ~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (292)
T COG0697 157 LLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLL-LLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWY 233 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999984--15769999999999999999-999971456676489999999999999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986258699999999999999999999978889989999999999999999999
Q gi|254780575|r 249 YGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLP 303 (316)
Q Consensus 249 ~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~ 303 (316)
+++++.++++++++.+++|+++.+++++++||+++..+++|+.+|+.|+.+...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~iG~~li~~g~~~~~~~ 288 (292)
T COG0697 234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998667099999999999999999999948999688999999999999999643
No 8
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.84 E-value=1.2e-18 Score=118.52 Aligned_cols=277 Identities=16% Similarity=0.090 Sum_probs=184.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHH
Q ss_conf 744014527799999999999999999999996-3898899999999999999999999971000011221035001123
Q gi|254780575|r 15 SKENASLPTMMGTLFVFCAYILWGITPLYTQFL-EQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGM 93 (316)
Q Consensus 15 ~~~~~~~~~~~G~~~~l~a~~lwg~~~~~~k~l-~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (316)
+..+.+.....-+...+.+++.--....+.|.+ ..++|..++.+|..++...++.+ +|.+++.. .+.....
T Consensus 2 p~a~~~~~~~~p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l---~RPwr~r~-----~~~~~~~ 73 (292)
T COG5006 2 PGALRKLAVWLPILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLAL---FRPWRRRL-----SKPQRLA 73 (292)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHCC-----CHHHHHH
T ss_conf 864335565421999999999987328899987113662257999999999999998---51887635-----8202479
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH---
Q ss_conf 34346668875334666653345899999997699999999742023564379999999986565566236885205---
Q gi|254780575|r 94 LVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLL--- 170 (316)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 170 (316)
....+...+.....+|.+........+..+-++-|+....+. .+|..-..|++..+..++......++....+
T Consensus 74 ~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~G 149 (292)
T COG5006 74 LLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVG 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHH----CCHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHH
T ss_conf 999988998878999999986452030211200589999985----0226547999999987775111666767677798
Q ss_pred ---HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---77999998653210001123444225788999999877775310013456567872566788653344211579999
Q gi|254780575|r 171 ---SLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIF 247 (316)
Q Consensus 171 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~ 247 (316)
....+..|+.|+...++... ...-.......+..+..+..+...........++......+..++..+.++|.+.
T Consensus 150 v~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 150 VALALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHCCHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999876899999997232104--6887216899999999998202564255263185799999999998623103789
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998625869999999999999999999997888998999999999999999999999
Q gi|254780575|r 248 SYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTV 305 (316)
Q Consensus 248 ~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~ 305 (316)
+.+++|.|+..-+.+..+||.++.+.|++++||++++.||.|.++|+.+.+-.++...
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999607745789999873799999899996577989999999999999712312467
No 9
>KOG4510 consensus
Probab=99.82 E-value=2e-21 Score=133.74 Aligned_cols=294 Identities=14% Similarity=0.129 Sum_probs=189.1
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH
Q ss_conf 00147440145277999999999999999999999963898899999999999999999999971000011221035001
Q gi|254780575|r 11 SKGLSKENASLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKA 90 (316)
Q Consensus 11 ~~~~~~~~~~~~~~~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (316)
+|...+.-.+.+..+|..+...+ ..+....+.++-+.+.+|.++...|+++-.....+..++.+... ..+...|.+..
T Consensus 24 ~e~~~qri~~d~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v-~gp~g~R~~Li 101 (346)
T KOG4510 24 LERTLQRISKDKPNLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPV-IGPEGKRKWLI 101 (346)
T ss_pred HHHHHHHHHCCCCCCCCEEHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHEHHHHHEEEEEEEEEE-ECCCCCEEEEE
T ss_conf 99976575068876675201069-98766787510121058267654556312141201789896456-55877279998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC---C-
Q ss_conf 123343466688753346666533458999999976999999997420235643799999999865655662368---8-
Q gi|254780575|r 91 VGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS---G- 166 (316)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~- 166 (316)
+...... ......+++..+.+.+.+..+.+..|.++.++++...+|+-++....+..+.+.|+.++..+. |
T Consensus 102 LRg~mG~-----tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~ 176 (346)
T KOG4510 102 LRGFMGF-----TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGD 176 (346)
T ss_pred EEHHHHH-----HHHHHHHHHHHHCCHHHEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEECCCCCCCC
T ss_conf 5211204-----68999999996204410379985273999999999975987589998877744158999428700178
Q ss_pred -------------CCHHHH-HH--HHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf -------------520577-99--9998653210001-123444225788999999877775310013456567872566
Q gi|254780575|r 167 -------------IPLLSL-AI--AVTWSAYCFARKT-IPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPD 229 (316)
Q Consensus 167 -------------~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (316)
...... .. .+....+...++. .+.+...+..+........++... ........+....+|
T Consensus 177 ~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~---~~ig~~~lP~cgkdr 253 (346)
T KOG4510 177 TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGC---ASIGAVQLPHCGKDR 253 (346)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH---HHCCCEECCCCCCCE
T ss_conf 76555466521358854788886764312799999860156389986388899999999988---504420067656504
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78865334421157999999986258699999999999999999999978889989999999999999999999999987
Q gi|254780575|r 230 TLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSG 309 (316)
Q Consensus 230 ~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~ 309 (316)
+..+.+| +.+.+++.+.+.++++..|..++++.|.+.++|.++.++++||.+++.+|.|+++|+.+.+.....++-+.+
T Consensus 254 ~l~~~lG-vfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~~~ 332 (346)
T KOG4510 254 WLFVNLG-VFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAGTN 332 (346)
T ss_pred EEEEEEH-HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCEEEEEHHHHHHHHHHHHCCC
T ss_conf 8888703-666678999987765540587001457788999999999845797288760624665127999999986034
Q ss_pred HHHHHC
Q ss_conf 755621
Q gi|254780575|r 310 KNKTKK 315 (316)
Q Consensus 310 k~~~~k 315 (316)
....||
T Consensus 333 e~s~k~ 338 (346)
T KOG4510 333 ESSLKK 338 (346)
T ss_pred HHHHHH
T ss_conf 255887
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.73 E-value=1.9e-14 Score=95.70 Aligned_cols=270 Identities=15% Similarity=0.072 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999638988-9999999999999999999997100001122103500112334346668875
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQFLEQVSV-LEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVH 104 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~l~~~~p-~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
.+.+.+.|+++=..-+...|-.+|=.+ +.... ...+.....++....-..... +..+...+......+..-..+
T Consensus 2 a~~lvL~aA~lHA~WN~l~K~~~d~~~~~~~~~--~~~~~i~~~p~~~~~~~~~~~---p~p~~~~w~~i~~S~~~h~~Y 76 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWA--LLAHSVLLTPYGLWYLAQVGW---SRLPATFWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHH
T ss_conf 799999999999999999954888108999999--999999999999999986368---998678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH------HHHHHHHHH
Q ss_conf 33466665334589999999769999999974202356437999999998656556623688520------577999998
Q gi|254780575|r 105 WGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPL------LSLAIAVTW 178 (316)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~ 178 (316)
......+.+.++...+.++.--.|+++...+....+|+++..+++++.+...|+........... .....+...
T Consensus 77 ~~~L~~aY~~gdls~vYPiaRgsPllv~l~a~l~lgE~ls~~~~~Gi~li~~Gi~~l~~~~~~~~~~~~l~~al~t~~~i 156 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGT 156 (281)
T ss_pred HHHHHHHHHCCCCCEECHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999998358841111064157699999999997476889899999999999999840120356604799999999999
Q ss_pred HHHHHHHCCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6532100011--2344-422578899999987777531001345656787256678865334421157999999986258
Q gi|254780575|r 179 SAYCFARKTI--PVGS-SEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAK 255 (316)
Q Consensus 179 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~ 255 (316)
+.+...-+.. ..+. .....+...............................+.....+++.+..+|.+..+++++.|
T Consensus 157 a~Ytl~D~~a~~gv~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~s~~sY~lvl~A~~~~p 236 (281)
T TIGR03340 157 AIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWAMTRLP 236 (281)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998655047666569999999999999999999999657515677899889999999999999999999981084
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 699999999999999999999978889989999999999999999
Q gi|254780575|r 256 LSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVY 300 (316)
Q Consensus 256 a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~ 300 (316)
.+.++.+.-...++++++|+++|+|+.+..+++|+++|..|+++.
T Consensus 237 va~VaalRetSIlfa~l~g~~~lkE~~~~~Rl~~~~li~~Gvvll 281 (281)
T TIGR03340 237 VATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 265676998899999999999977965098999999999979969
No 11
>TIGR00688 rarD RarD protein; InterPro: IPR004626 This uncharacterised protein is predicted to have many membrane-spanning domains..
Probab=99.68 E-value=9.8e-14 Score=91.77 Aligned_cols=253 Identities=28% Similarity=0.510 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC---CCCCHHHHHHHHHHHH
Q ss_conf 9999999999999999999999638988999999999999999999999710000112210---3500112334346668
Q gi|254780575|r 25 MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTL---KNPKAVGMLVFSATIL 101 (316)
Q Consensus 25 ~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 101 (316)
+|.+....+.+.||..+.+.|+++..+..++...|..++..++.......|++........ +++.........+...
T Consensus 2 ~g~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~~~~~~~~~~k~p~~~~~~~~~~~l~ 81 (259)
T TIGR00688 2 KGVLVSLLALFLWGYFPLYWKLLKPLPALDILGHRVIWSFPFVLLLLTLLRQWAALWELLKTLQKRPGGILSLLLCGLLI 81 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 51689999999987899999998522502567788999999999999998778889999852201512789999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q ss_conf 875334666653345899999997699999999742023564379999999986565566236-8852057799999865
Q gi|254780575|r 102 AVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH-SGIPLLSLAIAVTWSA 180 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 180 (316)
...+..+..+..+.........+...|+..+..+..+.+|+.++.++.++.++..|+...... ++........++.+..
T Consensus 82 g~~~~~~~W~~n~g~~l~~~~gy~~~p~~~~~~g~~f~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 161 (259)
T TIGR00688 82 GGNWWLFLWAVNNGFLLEASLGYLLNPLVSVLLGRLFLKEGLSRLQWLAVILATLGVLVNLWLFGSLPWVALGLAFSFGL 161 (259)
T ss_pred HHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 32343103422665025656657888999999878887410247899999999999999988615734999999998888
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 32100011234442257889999998777753100134565678725667886533442115799999998625869999
Q gi|254780575|r 181 YCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVG 260 (316)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s 260 (316)
+....+........+..............+...............+...+..+...++.+..+..++..+-++.+....+
T Consensus 162 y~~~~k~~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~w~~l~~~g~~~~~~l~~~~~~~~~lp~~~~g 241 (259)
T TIGR00688 162 YGLVRKKLKLPDLAGLLLETLWLLPVALGYLLATGDATPAGTGPGPLGLWLLLVLAGLVTGLPLLLFAAAANRLPLNLLG 241 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87666554115778899999998899999998740000103676512689999999998889999999875421467878
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780575|r 261 IMEYTAPLLMIVSSVFI 277 (316)
Q Consensus 261 ~~~~l~Pv~a~i~~~~~ 277 (316)
.+.|..|-...+.+..+
T Consensus 242 ~~~y~~~~~~~l~~~~~ 258 (259)
T TIGR00688 242 LLGYIGPTLMLLLGLFL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 88887899999999971
No 12
>pfam00892 EamA EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6.
Probab=99.63 E-value=1e-14 Score=97.09 Aligned_cols=122 Identities=11% Similarity=0.169 Sum_probs=94.3
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 65321000112344422578899999987777531001345656787256678865334421157999999986258699
Q gi|254780575|r 179 SAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLST 258 (316)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~ 258 (316)
+.+....+... ++.++.............................+...|...++.+.+++.+++.++++++++.++++
T Consensus 4 ~~~~v~~k~~~-~~~~p~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~a~~ 82 (126)
T pfam00892 4 ALYFVFSKKLL-ERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYFYALKYVSASN 82 (126)
T ss_pred EHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 01699999987-42899999999999999999999999738767899999999999999999999999999998838999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999788899899999999999999999
Q gi|254780575|r 259 VGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 259 ~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
++++.+++|+++++++++++||+++..+++|.++++.|++++.
T Consensus 83 as~~~~~~Pv~~~l~a~~~l~E~~~~~~~iG~~l~~~Gv~lv~ 125 (126)
T pfam00892 83 ASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLIL 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999998999999999999289998999999999999999993
No 13
>pfam08449 UAA UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine.
Probab=99.50 E-value=8.5e-11 Score=75.77 Aligned_cols=270 Identities=17% Similarity=0.087 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHH-HHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999-99638-9889999999999999999999997100001122103500112334346668875334
Q gi|254780575|r 30 VFCAYILWGITPLYT-QFLEQ-VSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGF 107 (316)
Q Consensus 30 ~l~a~~lwg~~~~~~-k~l~~-~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (316)
...+.+.||..---. |.-.+ -.+.-+++..+++....-++.....++ .+.++.+.+ ...............
T Consensus 8 i~~~~~~~g~~qE~i~~~~~~~~~~~~ltf~q~~~~~~~~~~~~~~~~~-~~~~~~pl~------~y~~~s~~~~~s~~~ 80 (303)
T pfam08449 8 IFGGCCSNGVLQELIMTREYGSPFGNLLTFAQFLFISLVGLLYLLLFKK-LKPRKIPLK------TYVLIVATFFLSSVL 80 (303)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHH------HHHHHHHHHHHHHHH
T ss_conf 9999999999855412478987540799999999999999999998067-889878599------999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-----------HHHHHHHH
Q ss_conf 6666533458999999976999999997420235643799999999865655662368852-----------05779999
Q gi|254780575|r 108 FIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIP-----------LLSLAIAV 176 (316)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~ 176 (316)
...+..+.+...-...=..-|+.+++.+....++|-+..+...++....|+.......... ..+..+..
T Consensus 81 ~n~aL~yis~p~~~l~KS~k~i~vml~g~l~~~krys~~~y~sv~~it~Gv~if~~~~~~~~~~~~~~~~~~~~G~~ll~ 160 (303)
T pfam08449 81 NNYALKYISYPTHVIFKSCKLIPVMILGILIYGKRYSSLQYLSALLITLGVIIFTLASAKDSKNSKLTTFSDNVGIALLF 160 (303)
T ss_pred HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 89988625857999998166209999999981865658999787668844665063466667665545421058999999
Q ss_pred HH----HHHHHHHCC----CCCCCCCHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98----653210001----123444225788999999877775310---0134565678725667886533442115799
Q gi|254780575|r 177 TW----SAYCFARKT----IPVGSSEGFFIEMCVLAIPALFYVVWN---GFSGGEHFFLGNIPDTLFLIGYGLLNSFVFC 245 (316)
Q Consensus 177 ~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~ 245 (316)
.. +.......+ .+.+....+.................. ...............+..+..-.++..+++.
T Consensus 161 ~sl~~d~~~~~~qe~l~~~~~~~~~e~m~y~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~p~~~~~l~~~~l~~~~~~~ 240 (303)
T pfam08449 161 GALLMDALTGNTQEKLYKKYGKHSKEMMFYSNLLSLPFFLLGLLDIRTGLLFSAESFCLRHPSVLFYLLLNSLTQYVGQF 240 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998999999999874989899999999999999999999986234676789986392999999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999986258699999999999999999999978889989999999999999999999999
Q gi|254780575|r 246 IFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVI 306 (316)
Q Consensus 246 ~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~ 306 (316)
..+..+++.+|...++....-=.++++++++++|+++++.||+|.++++.|+.++...+.+
T Consensus 241 ~if~li~~~salt~~iv~t~Rk~~sillSv~~F~~~lt~~~~~G~~lvf~G~~~y~~~k~k 301 (303)
T pfam08449 241 FVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAYLKKK 301 (303)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999998807899999999999999999987449968589999999999999999995404
No 14
>pfam06027 DUF914 Eukaryotic protein of unknown function (DUF914). This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as being putative membrane proteins.
Probab=99.43 E-value=3.7e-11 Score=77.74 Aligned_cols=281 Identities=13% Similarity=0.084 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CC-HHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHCCCCCHHHHHH
Q ss_conf 452779999999999999999999999638--98-899999999999999999999971000-01122103500112334
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQFLEQ--VS-VLEVISHRVLWSLPGVFFAIVYFSGGL-SLLKDTLKNPKAVGMLV 95 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~l~~--~~-p~~i~~~R~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 95 (316)
.++..+|+.+.=.-+++-..++++.+++++ ++ |....+.-+..-....... ...|+.. +..+...++++....
T Consensus 8 t~~~~~~l~lGQ~lSll~~~t~~~s~~L~~~g~s~P~~Qs~~~Y~lL~lvy~~~-~~~r~~~~~~~~~l~~~ww~Y~l-- 84 (335)
T pfam06027 8 TKKTLIGLGLGQILSLLITGTGFTSSYLARKGINAPTSQTFLNYVLLALVYTGI-LAYRRGEKNLLVIIKRKWWKYFL-- 84 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHEECCCCCHHHHHHCHHHHHHH--
T ss_conf 899999999999999999979999999985697861789999999999999778-74252355402666330799998--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC----------
Q ss_conf 3466688753346666533458999999976999999997420235643799999999865655662368----------
Q gi|254780575|r 96 FSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS---------- 165 (316)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------- 165 (316)
++..- .-..+....+.++++...+..+........+.+++.+.+.|-++.+..++.+++.|+.......
T Consensus 85 la~~D-VeaNy~vV~AYqYTsltSvqLLdc~~Ip~vm~LS~~fLk~rY~~~h~~gv~ici~G~~~lv~sD~~~~~~~~~g 163 (335)
T pfam06027 85 LALVD-VEANYLVVKAYQYTSLTSVQLLDCWAIPCVLVLSWFFLKTRYRLMHISGVVICILGVVMVVFSDVLAGRRAYGG 163 (335)
T ss_pred HHHEE-CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCC
T ss_conf 98402-44768987403450198999974449999999999999967859999999999738457998503257778887
Q ss_pred CCC---H-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH---HHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 852---0-577999998653210001123444225788999999877775---310013456567872566788653344
Q gi|254780575|r 166 GIP---L-LSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYV---VWNGFSGGEHFFLGNIPDTLFLIGYGL 238 (316)
Q Consensus 166 ~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~l~~~ 238 (316)
++. + .....+..++......... .++.+..............+-. ............++...+... ..-.+
T Consensus 164 ~n~l~GDll~L~gA~lYa~sNV~qE~~-Vk~~~~~E~L~~lG~fg~iIs~iQ~~ilE~~~i~~~~W~~~~~~~~-~gy~~ 241 (335)
T pfam06027 164 SNPVKGDFLVLAGATLYAVSNVTEEFL-VKNLSRVELLGMLGLFGAIISGIQTAIFERKELKAIHWDWEIVLLF-AGFAL 241 (335)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHEEE-ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHH
T ss_conf 765410199999999998657563000-2378799999999999999999999998798897285463164999-99999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21157999999986258699999999999999999999978889989999999999999999999999
Q gi|254780575|r 239 LNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVI 306 (316)
Q Consensus 239 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~ 306 (316)
+..+-|.+.-.-+|+-+|+...+=......++++++.+++|+.+++.-+++.++|+.|++++.+.+..
T Consensus 242 ~lf~~Ysl~P~vl~~ssAt~~NLSlLTsd~y~v~~~i~~F~~~~~~LY~laF~lI~~Gl~iY~~~~~~ 309 (335)
T pfam06027 242 CMFLFYSLMPILIKKTSATMFNLSLLTSDMWSLLIGIFLFHYKVDWLYFLAFATIAIGLIIYSMKETD 309 (335)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEECCCCC
T ss_conf 99999998899999653888779888766999999998626766089999999999865378727887
No 15
>pfam00892 EamA EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6.
Probab=99.30 E-value=6.7e-11 Score=76.35 Aligned_cols=124 Identities=20% Similarity=0.320 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999-6389889999999999999999999997100001122103500112334346668875334666653
Q gi|254780575|r 35 ILWGITPLYTQF-LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFIYALL 113 (316)
Q Consensus 35 ~lwg~~~~~~k~-l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (316)
++||...+..|. ++++||.+++++|++++.+.+.+.....+++... .. ..................+..++.+.+
T Consensus 1 l~W~~~~v~~k~~~~~~~p~~~~~~r~~~~~i~l~~~~~~~~~~~~~--~~--~~~~~~~~~~g~~~~~~~~~l~~~~l~ 76 (126)
T pfam00892 1 LSWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFAL--LS--LKAILALLYLGLFGTALGYLLYFYALK 76 (126)
T ss_pred CEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93101699999987428999999999999999999999997387678--99--999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3458999999976999999997420235643799999999865655662
Q gi|254780575|r 114 TRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMT 162 (316)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 162 (316)
..+...++......|++..++++...+||++..++++.++++.|+....
T Consensus 77 ~~~a~~as~~~~~~Pv~~~l~a~~~l~E~~~~~~~iG~~l~~~Gv~lv~ 125 (126)
T pfam00892 77 YVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLIL 125 (126)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8389999999998999999999999289998999999999999999993
No 16
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.25 E-value=1.3e-11 Score=80.28 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 872566788653344211579999999862586999999999999999999999788899899999999999999999
Q gi|254780575|r 224 LGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 224 ~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
.+...|..+...| +.++++..+|+++++.-+++++.++.-..|++++++++++|||+++..+++|.++|.+|.+++.
T Consensus 62 ~~~k~~lflilSG-la~glswl~Yf~ALk~G~as~VvPidk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 62 IGPKSWLFLILSG-LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred CCCCEEHHHHHHH-HHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEE
T ss_conf 6752101554988-8999999999999964985558772311199999999999558787899999999985704475
No 17
>KOG2765 consensus
Probab=99.18 E-value=2.6e-10 Score=73.12 Aligned_cols=211 Identities=14% Similarity=0.089 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC------------
Q ss_conf 68875334666653345899999997699999999742023564379999999986565566236885------------
Q gi|254780575|r 100 ILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGI------------ 167 (316)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------ 167 (316)
.-+.....+..+...++++..+++-.+.-+++.+++..+..||.+..+..++.+.+.|++....+...
T Consensus 168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ll 247 (416)
T KOG2765 168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLL 247 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHH
T ss_conf 99999988887764214432123440216999999998284420099999999864257999914521346687320148
Q ss_pred -CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH--HHHHHH-----HHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -205779999986532100011234442257889999998--777753-----100134565678725667886533442
Q gi|254780575|r 168 -PLLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIP--ALFYVV-----WNGFSGGEHFFLGNIPDTLFLIGYGLL 239 (316)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~l~~~~ 239 (316)
...+...+..|+.|....++..-+............+.. .+.+.. ......+....++......+++.+.+.
T Consensus 248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~lig 327 (416)
T KOG2765 248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIG 327 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHH
T ss_conf 89999999999999999997533654551139999889999999998389999998655766689875267564745799
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11579999999862586999999999999999999999788899899999999999999999999999877
Q gi|254780575|r 240 NSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGK 310 (316)
Q Consensus 240 t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k 310 (316)
|.++-++|.+|.-..++-.+..-+.+..+.|++.+.++=|.++++.+++|.+.|.+|-++.+.........
T Consensus 328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~ 398 (416)
T KOG2765 328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKD 398 (416)
T ss_pred HHHHHHHHHHHHHHCCCHHHEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCC
T ss_conf 99999999999983051553012347532999999997078998999998899999786211343433336
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.08 E-value=6.9e-10 Score=70.80 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999-6389889999999999999999999997100001122103500112334346668875
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQF-LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVH 104 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~-l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
-.++++++++.||..++|.|. +++++|..-++.|.+....++...+...++.........|. +......+......
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~---~lflilSGla~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKS---WLFLILSGLAGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCE---EHHHHHHHHHHHHH
T ss_conf 799999999999899999997325669428999999999999999998627610356667521---01554988899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3346666533458999999976999999997420235643799999999865655662
Q gi|254780575|r 105 WGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMT 162 (316)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 162 (316)
+.+|+.+...+.+....++--+.|.+..++++.+.+||++..+++++++..+|.....
T Consensus 81 wl~Yf~ALk~G~as~VvPidk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEE
T ss_conf 9999999964985558772311199999999999558787899999999985704475
No 19
>KOG1441 consensus
Probab=98.94 E-value=5.1e-09 Score=66.10 Aligned_cols=259 Identities=12% Similarity=0.137 Sum_probs=153.6
Q ss_pred HHH-HC--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-63--898-89999999999999999999997100001122103500112334346668875334666653345899
Q gi|254780575|r 44 TQF-LE--QVS-VLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFL 119 (316)
Q Consensus 44 ~k~-l~--~~~-p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (316)
-|+ ++ +.+ |..++..+...+...... ...++-..+ .+...+..+......+...+........+....++..
T Consensus 36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v-~~~l~~~~~---~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441 36 NKYILSKYGFPFPITLTMLHLFCGALALLV-IKVLKLVPP---SKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSF 111 (316)
T ss_pred EHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHH
T ss_conf 386624778987529999999999999999-999567887---7666542068889999999888872513132141129
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----HHHHCCCC---CC
Q ss_conf 99999769999999974202356437999999998656556623688-520577999998653----21000112---34
Q gi|254780575|r 120 TSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSG-IPLLSLAIAVTWSAY----CFARKTIP---VG 191 (316)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~---~~ 191 (316)
.-..-...|.+++..++...+|+.+......+.....|+........ .+..+...+...... ....+... ..
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~ 191 (316)
T KOG1441 112 YQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGE 191 (316)
T ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998626436788899980787761178998774412788640456542888999999999999999999876530343
Q ss_pred CCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 44225788999999877775-31001345656------787256678865334421157999999986258699999999
Q gi|254780575|r 192 SSEGFFIEMCVLAIPALFYV-VWNGFSGGEHF------FLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEY 264 (316)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~ 264 (316)
...++.......-....... .+.....+... ..+...+... +.. ++...-...-+..+.+.+|.+-++...
T Consensus 192 ~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~ 269 (316)
T KOG1441 192 SLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL-LNS-VLAFLLNLSAFLVIGRTSALTYSVAGH 269 (316)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEECCCCCHHHHHHH-HHH-HHHHHHHHHHHHHHCCCCCHHHHHHCC
T ss_conf 557067887641588999853057664465201342166541559999-999-999999999999975567122533300
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997888998999999999999999999999998
Q gi|254780575|r 265 TAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINS 308 (316)
Q Consensus 265 l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~ 308 (316)
.--.+.+..++++|+|++++.+..|.++-+.|+.+++..+.+++
T Consensus 270 ~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441 270 MKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred CEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 10799998671345688854557879999999999999740011
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.89 E-value=3.7e-08 Score=61.38 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67872566788653344211579999999862586999999999999999999999788899899999999999999999
Q gi|254780575|r 222 FFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 222 ~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
+.++.. .|..+....+....-+.+..++.|+.+-+.+=++.=-.|++.++.+++++||++++.+++|..+|..|+.+..
T Consensus 56 p~p~~~-~w~~i~~S~~~h~~Y~~~L~~aY~~gdls~vYPiaRgsPllv~l~a~l~lgE~ls~~~~~Gi~li~~Gi~~l~ 134 (281)
T TIGR03340 56 SRLPAT-FWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 998678-9999999999999999999999835884111106415769999999999747688989999999999999984
Q ss_pred HHHHHHHH
Q ss_conf 99999987
Q gi|254780575|r 302 LPTVINSG 309 (316)
Q Consensus 302 ~~~~~~~~ 309 (316)
.++.++.+
T Consensus 135 ~~~~~~~~ 142 (281)
T TIGR03340 135 LSRFAQHR 142 (281)
T ss_pred HHHCCCCC
T ss_conf 01203566
No 21
>KOG2234 consensus
Probab=98.88 E-value=2.8e-06 Score=51.15 Aligned_cols=281 Identities=15% Similarity=0.108 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHH-HHHHCCCC-CHHHH
Q ss_conf 9999999999999999999996--38---9889999999999999999999997100-----001-12210350-01123
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQFL--EQ---VSVLEVISHRVLWSLPGVFFAIVYFSGG-----LSL-LKDTLKNP-KAVGM 93 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~l--~~---~~p~~i~~~R~~~a~~~l~~~~~~~~~~-----~~~-~~~~~~~~-~~~~~ 93 (316)
=.+.++.....+.......|+. .+ +.|.+.++.-=++-..+.....+...++ .+. .+.....+ ..+..
T Consensus 16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~ 95 (345)
T KOG2234 16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHH
T ss_conf 99999999999866899999971389887350489999999999999999999852776545531489988595889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-------
Q ss_conf 3434666887533466665334589999999769999999974202356437999999998656556623688-------
Q gi|254780575|r 94 LVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSG------- 166 (316)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------- 166 (316)
..-+......+ ...+.+..+.+++...+.+..-..-+.++.....++|.++.+|.+.++...|+...-.+..
T Consensus 96 ~vPa~iYalqN-nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234 96 SVPALIYALQN-NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 88999999861-09999995399533212566889999999999996033288999999999889987325789987667
Q ss_pred -----CCHHHHH----HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHH
Q ss_conf -----5205779----999986532100011234442257889999998777753100134565---6787256678865
Q gi|254780575|r 167 -----IPLLSLA----IAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEH---FFLGNIPDTLFLI 234 (316)
Q Consensus 167 -----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 234 (316)
....... .+...+....+.....++...+.............++........+.. +.--...|-...+
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw 254 (345)
T KOG2234 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVW 254 (345)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 77533314659999999999998899999998057740899999999988999989995203443334774036407999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3344211579999999862586999999999999999999999788899899999999999999999999999
Q gi|254780575|r 235 GYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVIN 307 (316)
Q Consensus 235 l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~ 307 (316)
..++..+.+=.+-..-+|+.+--.=.-...+..+++.+.++.++|-++|..-.+|..+++.++.+++..+.+.
T Consensus 255 ~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234 255 LVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999973254367989988577999999999999999999998067710899998899999998760587511
No 22
>PRK11272 hypothetical protein; Provisional
Probab=98.88 E-value=3.1e-07 Score=56.33 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 52779999999999999999999999638988999999999999999999999710000112210350011233434666
Q gi|254780575|r 21 LPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATI 100 (316)
Q Consensus 21 ~~~~~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (316)
.....|.++++.++++|+...+..|....-++.....+...++...+.........+..... ... ............
T Consensus 148 ~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~~ll~~~~~~~~~~~~~~-~~~--~~~~l~yl~i~~ 224 (293)
T PRK11272 148 SGNPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALP-TLS--GFLALGYLAVFG 224 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHH--HHHHHHHHHHHH
T ss_conf 12268999999999999999999987167888899999999999999999998747654567-899--999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8875334666653345899999997699999999742023564379999999986565566236
Q gi|254780575|r 101 LAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH 164 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 164 (316)
....+..+....+......++...+..|++..+.++...+|+++..++++..+.+.|+.....+
T Consensus 225 t~iay~l~~~~l~~~~~~~as~~~~l~Pv~a~l~g~~~LgE~l~~~~~iG~~lIl~gv~lv~~~ 288 (293)
T PRK11272 225 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGERLSPIEWLALGVIVFAVVLVTLG 288 (293)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999749999999998999999999999939988699999999999999999272
No 23
>pfam04142 Nuc_sug_transp Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human solute carrier family 35 member A1 transports CMP-sialic acid, solute carrier family 35 member A2 transports UDP-galactose and solute carrier family 35 member A3 transports UDP-GlcNAc.
Probab=98.78 E-value=1.7e-06 Score=52.38 Aligned_cols=203 Identities=17% Similarity=0.108 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--
Q ss_conf 123343466688753346666533458999999976999999997420235643799999999865655662368852--
Q gi|254780575|r 91 VGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIP-- 168 (316)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 168 (316)
..............-...+.+..+.+...-......-.+.+.++.....++|.++.+|.+.++...|+.....+.+..
T Consensus 17 ~lk~aVPa~lY~~qN~l~~~~l~~l~~~t~qvl~q~Kil~tA~~~~~~l~r~lS~~QW~AL~lL~~Gv~l~q~~~~~~~~ 96 (238)
T pfam04142 17 TLKVAVPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRKLSWYQWASLLLLFLGVAIVQLDQKSSET 96 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 89998999999998539999998099299999983799999999999986947599999999999999840357888776
Q ss_pred ----------HHHHH----HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHH
Q ss_conf ----------05779----99998653210001123444225788999999877775310013456---56787256678
Q gi|254780575|r 169 ----------LLSLA----IAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGE---HFFLGNIPDTL 231 (316)
Q Consensus 169 ----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 231 (316)
..+.. .++..+....+..+..++...+..............+........+. ....-...|-+
T Consensus 97 ~~~~~~~~~~~~G~~~vl~a~~~Sg~AgVy~Ek~LK~~~~si~~~NvqL~~~si~~~~~~~~~~d~~~i~~~gff~G~s~ 176 (238)
T pfam04142 97 NSKRGAEQNPGLGLSAVLAACFTSGFAGVYFEKILKGSNTSIWIRNIQLYFFGIFFALLTCWLYDGSAISEKGFFFGYTA 176 (238)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCH
T ss_conf 66454211168999999999999766899999998068998113109999999999999999717156542674037748
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 86533442115799999998625869999999999999999999997888998999999999
Q gi|254780575|r 232 FLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIV 293 (316)
Q Consensus 232 ~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lI 293 (316)
..+..++..+++=.+-..-+|+.+.-.=.--...+.+++.+++++++|.+++....+|..+|
T Consensus 177 ~vw~~I~~~A~gGilva~v~KyadnI~K~fa~s~sivlt~~lS~~lF~~~~t~~f~lg~~lV 238 (238)
T pfam04142 177 FVWAVVLLQAVGGLVVAVVVKYADNILKGFATSLAIILSTVASVLLFDFRPTLTFLLGAILV 238 (238)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEECC
T ss_conf 99999999861065345687761148999999999999999999993878635786212109
No 24
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.75 E-value=1.6e-06 Score=52.44 Aligned_cols=146 Identities=17% Similarity=0.313 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHCCCCCHHHH
Q ss_conf 452779999999999999999999999-6389889---99999999999999999999710000112--21035001123
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQF-LEQVSVL---EVISHRVLWSLPGVFFAIVYFSGGLSLLK--DTLKNPKAVGM 93 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~-l~~~~p~---~i~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 93 (316)
+.....|.++++.|+++|+...++.|. .++.++. ++..+-..+....+............... ...........
T Consensus 138 ~~~~~~G~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (299)
T PRK11453 138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSL 217 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHH
T ss_conf 51208999999999999999999999998117822499999999999999999999997583121110014888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 343466688753346666533458999999976999999997420235643799999999865655662368
Q gi|254780575|r 94 LVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS 165 (316)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 165 (316)
...........+..++.......+..++...+..|++.+..++...+|+++..+.++..+...|+.....+.
T Consensus 218 lyl~i~~s~lay~~w~~~l~~~~a~~~s~~~~l~Pv~av~~g~llLgE~lt~~~~iG~~lil~Gv~l~~~~~ 289 (299)
T PRK11453 218 MYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 999999999999999999996689999999999989999999999199997999999999999999994461
No 25
>KOG1443 consensus
Probab=98.67 E-value=2.8e-06 Score=51.13 Aligned_cols=278 Identities=14% Similarity=0.125 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 7799999999999999--9999999963898-899999999999999999999971000011221035001123343466
Q gi|254780575|r 23 TMMGTLFVFCAYILWG--ITPLYTQFLEQVS-VLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSAT 99 (316)
Q Consensus 23 ~~~G~~~~l~a~~lwg--~~~~~~k~l~~~~-p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (316)
.+..++..+...-..+ ..+.+.+.-.+++ |..++.+..+.-..+-.......++..+..+........+...+-.+.
T Consensus 13 ~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal 92 (349)
T KOG1443 13 NRVLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL 92 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999998899874244257687239999999999999999999874127754467748999987512664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHH
Q ss_conf 688753346666533458999999976999999997420235643799999999865655662368---85205779999
Q gi|254780575|r 100 ILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS---GIPLLSLAIAV 176 (316)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~ 176 (316)
.......+...+..+.+...-+..-...++++.+++..+.-||.+......+.+...|+...+... ...+.....+.
T Consensus 93 ata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~a 172 (349)
T KOG1443 93 ATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAA 172 (349)
T ss_pred HHHCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEHHHHHHHHH
T ss_conf 42024355411455664356340210178999999999876787789999999986444589961453541158999999
Q ss_pred H------HHHHHHHHCCCCCC--CCCHHHH--HHHHHHHHHHHHHHHHHCC----CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9------86532100011234--4422578--8999999877775310013----4565678725667886533442115
Q gi|254780575|r 177 T------WSAYCFARKTIPVG--SSEGFFI--EMCVLAIPALFYVVWNGFS----GGEHFFLGNIPDTLFLIGYGLLNSF 242 (316)
Q Consensus 177 ~------~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~t~i 242 (316)
+ |.......+..... .+..+.. +-.+..........+.... .......+....+..+.....+...
T Consensus 173 S~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~l 252 (349)
T KOG1443 173 SLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLL 252 (349)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98623168999999962863468870039876368999999999998053122032677845841799999999877999
Q ss_pred HHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7999---999986258699999999999999999999978889989999999999999999
Q gi|254780575|r 243 VFCI---FSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVY 300 (316)
Q Consensus 243 ~~~~---~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~ 300 (316)
++.+ -...+.+.+.-+.|+..-.--+...++|..+.+|+++...|.|..+.+.|+...
T Consensus 253 aF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443 253 AFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999877771133035122207989999999999999842103264799999998788884
No 26
>KOG1581 consensus
Probab=98.66 E-value=4.1e-06 Score=50.22 Aligned_cols=215 Identities=14% Similarity=0.108 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC-CC---------CCHH
Q ss_conf 8875334666653345899999997699999999742023564379999999986565566236-88---------5205
Q gi|254780575|r 101 LAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH-SG---------IPLL 170 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~---------~~~~ 170 (316)
......+.+.+..+.+--...+.-.+=.+-+++.+....++|.....-....+.-.|+..-... .+ ....
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~ 172 (327)
T KOG1581 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPI 172 (327)
T ss_pred HHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCHH
T ss_conf 64006777899885354399998772015999998998568267378899999972001478855899843358888517
Q ss_pred HHHHHHHHHH---H-HHHHC----CCCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7799999865---3-21000----1123444225788999999877775310-013456567872566788653344211
Q gi|254780575|r 171 SLAIAVTWSA---Y-CFARK----TIPVGSSEGFFIEMCVLAIPALFYVVWN-GFSGGEHFFLGNIPDTLFLIGYGLLNS 241 (316)
Q Consensus 171 ~~~~~~~~~~---~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~t~ 241 (316)
+..+.+.+.. . ..... ..+......+.................. .......+-......+.-+.+--.+.+
T Consensus 173 G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~ga 252 (327)
T KOG1581 173 GILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGA 252 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 69999999988765776799986557864757888888999999878651477872277898709568999999998633
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57999999986258699999999999999999999978889989999999999999999999999987755621
Q gi|254780575|r 242 FVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTKK 315 (316)
Q Consensus 242 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~k 315 (316)
+++.+.++-+++-++-.-..++...-.++++++.+.+|.+++..||+|..++..|+.+-...+.++..++++++
T Consensus 253 vGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~~~~~~k~~ 326 (327)
T KOG1581 253 VGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKKNQPRKKKA 326 (327)
T ss_pred HHHHEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 02220100196503489999999999999999999718843220046702306899999999875048644237
No 27
>KOG1444 consensus
Probab=98.65 E-value=1.6e-05 Score=47.06 Aligned_cols=206 Identities=13% Similarity=0.052 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHH
Q ss_conf 3346666533458999999976999999997420235643799999999865655662368-85205----779999986
Q gi|254780575|r 105 WGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS-GIPLL----SLAIAVTWS 179 (316)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~----~~~~~~~~~ 179 (316)
......+..+..+......--..++++.+.+..+++.++....+.++....+|........ ..... .........
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a 170 (314)
T KOG1444 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTA 170 (314)
T ss_pred HHHCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHH
T ss_conf 99701446656751999985220999987677631767112599999999987776116301000101799999999999
Q ss_pred HHHHHHCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5321000112----344422578899999987777531001----34565678725667886533442115799999998
Q gi|254780575|r 180 AYCFARKTIP----VGSSEGFFIEMCVLAIPALFYVVWNGF----SGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGI 251 (316)
Q Consensus 180 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~ 251 (316)
......++.. ......+.+.................. ..+...+.....+..+...+ +....--++-.++.
T Consensus 171 ~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc-v~gf~isy~s~~ct 249 (314)
T KOG1444 171 AFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC-VMGFGISYTSFLCT 249 (314)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 99999998622366662457863217888899999999464578886256411015899999999-99999999999997
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 625869999999999999999999997888998999999999999999999999998775
Q gi|254780575|r 252 KRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKN 311 (316)
Q Consensus 252 ~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~ 311 (316)
+..++...++....+-..+.+-+.++.|++.++...+|..+=+.|-++++..+.++++.+
T Consensus 250 ~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444 250 RVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHCCCCCEEEHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 113422121211140688887888117722025456899998640367756666413689
No 28
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.60 E-value=3.2e-06 Score=50.85 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67886533442115799999998625869999999999999999999-99788899899999999999999999999999
Q gi|254780575|r 229 DTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSV-FILKQPIDTVRTIVFGIVVIAMVVYLLPTVIN 307 (316)
Q Consensus 229 ~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~-~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~ 307 (316)
+......+.......+.+++.++++.+++.++.+.+..|++..++++ ++++|+++..++.|..+.+.|+++...++...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ll~~~~~~~e~~~~~~~~~~~~~~~Gv~li~~~~~~~ 148 (292)
T COG0697 69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999999999853199999999999999999999998488775999999999998898641155322
No 29
>PRK02971 hypothetical protein; Provisional
Probab=98.42 E-value=3.9e-07 Score=55.79 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66788653344211579999999862586999999999999999999999--7888998999999999999999999999
Q gi|254780575|r 228 PDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFI--LKQPIDTVRTIVFGIVVIAMVVYLLPTV 305 (316)
Q Consensus 228 ~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~--l~E~~~~~~~iG~~lIi~gv~l~~~~~~ 305 (316)
.....+..|..+..++..+|..++|+++-+++=++..+.=+...+.++.+ |||+++....+|..+|+.|+.+.+.+..
T Consensus 46 ~~~~~v~~Gl~~Y~lSmlcW~~aL~~l~LS~AYPllSLsYVlV~l~A~~Lp~F~E~~s~~K~lGv~lIi~Gv~lI~~p~~ 125 (129)
T PRK02971 46 LALRAVLLGLAGYALSMLCWLKALRYLPLSRAYALLSLSYALVYLAAMLLPGFNETFSLKKTLGVACIMLGVMLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHEEEEECCCC
T ss_conf 23799999999999999999999954207554157868999999999998773786008998889999641125865630
Q ss_pred H
Q ss_conf 9
Q gi|254780575|r 306 I 306 (316)
Q Consensus 306 ~ 306 (316)
+
T Consensus 126 ~ 126 (129)
T PRK02971 126 K 126 (129)
T ss_pred C
T ss_conf 2
No 30
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=98.36 E-value=3.4e-05 Score=45.21 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHH
Q ss_conf 1452779999999999999999999999-6389889999---99999999999999999710000112210350011233
Q gi|254780575|r 19 ASLPTMMGTLFVFCAYILWGITPLYTQF-LEQVSVLEVI---SHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGML 94 (316)
Q Consensus 19 ~~~~~~~G~~~~l~a~~lwg~~~~~~k~-l~~~~p~~i~---~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (316)
.-+....|++..+.|++.|....+..|. .+..+|.... +..+.++++.+.+......++........ ...+...
T Consensus 133 ~~~~~~~G~~~~~~s~~~~A~g~v~~K~~~~~~~~~~~~~~~~~~l~~Gal~llp~~~~~~~~~~~~p~~~--~~~g~~~ 210 (275)
T TIGR00950 133 NLSINPAGLLLGLLSGISFALGTVLAKRLVKKEGPELLQFTGFGVLLIGALLLLPFAWLLGPNPQLLPATS--LQWGALL 210 (275)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHH--HHHHHHH
T ss_conf 66522999999999999999999998752067987426789999999999999999998456501111024--6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4346668875334666653345899999997699999999742023564379999999986565
Q gi|254780575|r 95 VFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSL 158 (316)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 158 (316)
.++...-+..+..|..+.+..++..++......|....+++....+|+.+..++++....+.++
T Consensus 211 yLg~~~t~l~y~l~~~Gl~~V~~~~a~~l~~~~P~~a~LLg~~~~g~~l~~~~l~g~~~i~~~~ 274 (275)
T TIGR00950 211 YLGLIGTLLAYFLWNKGLTLVDPSAASILALLEPLVALLLGLLILGETLSLIQLIGGALIIAAV 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999998764347046577664668999999999973046798999999999982
No 31
>PRK11689 hypothetical protein; Provisional
Probab=98.33 E-value=6e-05 Score=43.91 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 7799999999999999999999996-389889999999999999999999997100001122103500112334346668
Q gi|254780575|r 23 TMMGTLFVFCAYILWGITPLYTQFL-EQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATIL 101 (316)
Q Consensus 23 ~~~G~~~~l~a~~lwg~~~~~~k~l-~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (316)
+..|.++++.++++|+.-.+..|.. ++.++.... +......+......... . ........+......+...
T Consensus 154 nplG~~Lal~aal~Wa~Ysvl~rr~~~~~~~v~~~---~~~~a~~l~~~~~~~~~-~----~~~~~~~~~~~l~~~g~~~ 225 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCTVTKKYANGKNGITLF---FLLTALALWIKYFLSGQ-P----AMVFSLPAIIKLLLAAAAM 225 (295)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHHHCCC-C----CCCCCHHHHHHHHHHHHHH
T ss_conf 60679999999999999999999824888508999---99999999999996588-6----5677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 875334666653345899999997699999999742023564379999999986565566
Q gi|254780575|r 102 AVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIM 161 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 161 (316)
...+..+..+....+........+..|++..++.....+|++....+++..+.+.|....
T Consensus 226 g~af~~W~~al~~~~a~~~a~l~yl~Pv~S~ll~~l~L~e~lt~~~~~G~~lI~~G~ll~ 285 (295)
T PRK11689 226 GFGYAAWNVGILHGNMTLLATASYFTPVLSSALAALLLSTPLSFSFWQGAAMVTAGSLLC 285 (295)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999997158999999999999999999999966875299999999999999999
No 32
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.23 E-value=3.6e-06 Score=50.56 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44211579999999862586999-99999999999999999978889989999999999999999999999987755
Q gi|254780575|r 237 GLLNSFVFCIFSYGIKRAKLSTV-GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 237 ~~~t~i~~~~~~~a~~~~~a~~~-s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
..+..+++++...++|++|.+.+ ++-+-+-.+...+.|+++|||+++..+++|..+|+.|+++....+...+++++
T Consensus 37 ~~~y~~sf~~Ls~alk~ipvgvAYAiWsGvG~~~itlig~~~F~E~l~~~~~~gi~lIi~GVv~l~~gs~~a~~~~~ 113 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKARKPEL 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCHH
T ss_conf 99999999999999811727999999998999999999999967989799999999999878404247855653024
No 33
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.19 E-value=3.2e-05 Score=45.35 Aligned_cols=76 Identities=14% Similarity=0.298 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6788653344211579999999862586999999999999999999999788899899999999999999999999
Q gi|254780575|r 229 DTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPT 304 (316)
Q Consensus 229 ~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~ 304 (316)
.+..+.+....-..-...|.++..+-..-.+|.=.|++|++.+++|.++++|+++..|++..++-.+||...++..
T Consensus 71 ~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 71 TLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999777875053179853688767999899999999999971446889999999999999999980
No 34
>KOG1580 consensus
Probab=98.18 E-value=6.9e-06 Score=48.99 Aligned_cols=177 Identities=11% Similarity=0.103 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHH--HH-HHH---CCCCC
Q ss_conf 699999999742023564379999999986565566236885---------2057799999865--32-100---01123
Q gi|254780575|r 126 VTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGI---------PLLSLAIAVTWSA--YC-FAR---KTIPV 190 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~--~~-~~~---~~~~~ 190 (316)
.-|+-+++++..+.+++-.+....++.....|+.......+. ......+.++... .. ... +....
T Consensus 120 cKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq 199 (337)
T KOG1580 120 CKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQ 199 (337)
T ss_pred CCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 88760440212244144557888999999987888501356547875112446789999998734641467999998545
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 44422578899999987777531001345-----6567872566788653344211579999999862586999999999
Q gi|254780575|r 191 GSSEGFFIEMCVLAIPALFYVVWNGFSGG-----EHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYT 265 (316)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l 265 (316)
.....+... ......+.......+... ....-.+..|+. +-+..+++.+++++.+.-+..-+|-..|++...
T Consensus 200 ~~g~~MM~~--~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~-l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTT 276 (337)
T KOG1580 200 RTGTSMMFY--TNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWD-LTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTT 276 (337)
T ss_pred CCCHHHHHH--HHHHHHHHHHHHHEEHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEH
T ss_conf 675136778--87999998602542500288888999856299998-799999988646889999987188137888523
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999997888998999999999999999999999
Q gi|254780575|r 266 APLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTV 305 (316)
Q Consensus 266 ~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~ 305 (316)
.-.++++.++++++.+++..||+|.+++..++..-..++.
T Consensus 277 RKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580 277 RKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899999999981686718889899999987535765177
No 35
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=98.17 E-value=0.00028 Score=40.23 Aligned_cols=274 Identities=12% Similarity=0.078 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999963--8988999999999999999999999710000112210350011233434666887
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQFLE--QVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAV 103 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~l~--~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (316)
+++.++..++.||..+.+.+.+. +-|..+.+.. .++++.+-..+..+++..-..--..-+..........|..-..
T Consensus 2 ~il~aL~Pa~~WG~~~~~~~Kig~Wg~P~~q~lG~--t~GaLI~~i~~~~~~~p~~~~YY~~F~l~~~~~gl~sG~~Wal 79 (336)
T TIGR00776 2 DILIALLPALFWGSFVLINVKIGKWGKPASQTLGT--TFGALILSIIIAIIVLPEFTAYYSSFSLTIFLVGLISGAFWAL 79 (336)
T ss_pred CHHHHHHHHHHHHEEHHHHHCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 43899987874411010111025887125578778--9999999999998718982254302124778889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCH----H---HHHHHHHHHHHHHHHHCCCCCCH------
Q ss_conf 53346666533458999999-9769999999974202356437----9---99999998656556623688520------
Q gi|254780575|r 104 HWGFFIYALLTRQGFLTSFS-YFVTPVISVFLGSVFLKERLNH----L---QIIAALLIILSLLIMTLHSGIPL------ 169 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~g~~~~~~~~~~~~------ 169 (316)
....+..+.++..++.+.++ .-.+.+...+.+....+|+-+. . ...++.+.++|+.+....+...+
T Consensus 80 GQ~~q~~~~~~~GvS~tmPistG~QLv~~sL~gvivfgeW~~~~~~~~GRmt~lAl~liiiGv~lts~~GqL~~~~~~~~ 159 (336)
T TIGR00776 80 GQINQFKSMRYIGVSKTMPISTGLQLVGGSLFGVIVFGEWSTSIQILLGRMTLLALILIIIGVYLTSISGQLKDKSAKIK 159 (336)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 75458777764020220145664899987877530122447631013054999999999999999730212114553211
Q ss_pred -----------HHHHH---HHHHHHHHHHHC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC------------
Q ss_conf -----------57799---999865321000-------112344422578899999987777531001------------
Q gi|254780575|r 170 -----------LSLAI---AVTWSAYCFARK-------TIPVGSSEGFFIEMCVLAIPALFYVVWNGF------------ 216 (316)
Q Consensus 170 -----------~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 216 (316)
..... ..+|..|....+ ....+.......+..........+......
T Consensus 160 ~e~~N~~Kg~~lLl~sGiF~~GY~~Y~~~a~PmHEAA~~~~vd~~~~~LPq~iGm~iGg~i~~~~~~~~RLAkv~~Ls~k 239 (336)
T TIGR00776 160 SEEFNLKKGILLLLVSGIFTIGYLVYVVVAKPMHEAAAALGVDGLSVLLPQAIGMVIGGIIFNLKHCFKRLAKVKDLSLK 239 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 25354257899999987899999999860662678888824554566843488887778998756668877766531210
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH----HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----
Q ss_conf -345656787256678865334421157999999-986----2586999999999999999999999788899899----
Q gi|254780575|r 217 -SGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSY-GIK----RAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVR---- 286 (316)
Q Consensus 217 -~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~-a~~----~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~---- 286 (316)
++...-.......+.= .+.++.=+++.+.|.. +.+ +.+.+..=.++.+.-+++.+=|+++++|.=|-.+
T Consensus 240 ADFs~~k~~~~~~~~lN-~~~Gl~w~~~~f~y~~~~qp~PAq~~Gvat~F~~SQ~~~i~stlGGI~~l~E~K~Kr~~~~~ 318 (336)
T TIGR00776 240 ADFSLAKPLKKYAIWLN-ILSGLIWGIGNFFYLFSAQPIPAQKVGVATSFSLSQLGVIISTLGGILILGEKKTKRELIAI 318 (336)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 11122015788999998-78899999999999998468710688999999999999999998788763037875200145
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780575|r 287 TIVFGIVVIAMVVYLL 302 (316)
Q Consensus 287 ~iG~~lIi~gv~l~~~ 302 (316)
++|+++|++|-.+...
T Consensus 319 ~~GiiliiiAa~~~g~ 334 (336)
T TIGR00776 319 VVGIILIIIAAVILGI 334 (336)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 4578998878999875
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00031 Score=39.98 Aligned_cols=199 Identities=11% Similarity=0.095 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHH
Q ss_conf 33458999999976999999997420235643799999999865655662368-------------85205779999986
Q gi|254780575|r 113 LTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS-------------GIPLLSLAIAVTWS 179 (316)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~~~~~~~ 179 (316)
++.....-++.-....+++...+..+.+.|........-++.++.-.....+. |-.+.. ..++..+
T Consensus 90 qyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~-~Nclssa 168 (309)
T COG5070 90 QYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMF-TNCLSSA 168 (309)
T ss_pred EEEEEEHHHHHCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEE-HHHHHHH
T ss_conf 564036887865661102575578874674023149999999999987400006677787504678538876-4467678
Q ss_pred -HHHHHHCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -53210001123444---225788999999877775310013456--567872566788653344211579999999862
Q gi|254780575|r 180 -AYCFARKTIPVGSS---EGFFIEMCVLAIPALFYVVWNGFSGGE--HFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKR 253 (316)
Q Consensus 180 -~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~ 253 (316)
.....+++.+.... ..+++.........+.+........+. ....+.....++ +..++++..--++-.|.+|.
T Consensus 169 afVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am-~ISgl~svgiSy~saWcvrV 247 (309)
T COG5070 169 AFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAM-FISGLCSVGISYCSAWCVRV 247 (309)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHH-HHHHHHHHHHHHCCCEEEEE
T ss_conf 99999987621345320268998616788899988877513783002128885789999-99888773144413136764
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 586999999999999999999999788899899999999999999999999999877556
Q gi|254780575|r 254 AKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKT 313 (316)
Q Consensus 254 ~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~ 313 (316)
.+.+..|++..++-.-.++.|.++|||+.+...+....+=..+.+++..+...++.++|.
T Consensus 248 tSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~~ 307 (309)
T COG5070 248 TSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQKD 307 (309)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 025389998886417487755520588604888999999998779999998888842778
No 37
>pfam05653 DUF803 Protein of unknown function (DUF803). This family consists of several eukaryotic proteins of unknown function.
Probab=98.14 E-value=0.00024 Score=40.63 Aligned_cols=258 Identities=14% Similarity=0.029 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 452779999999999999999999999-6389889999999999999999999997100001122103500112334346
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQF-LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSA 98 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~-l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (316)
+.....|..+++.++++-|.+.+..|. +-..... ..| .........+.+.++.......
T Consensus 2 ~~~~~iG~~lav~ss~~ig~s~~i~K~~~~r~~~~---~~~-----------------~~~~g~~Yl~~~~Ww~G~~~m~ 61 (300)
T pfam05653 2 NTDNYIGLILAVSSSIFIGSSFIIKKKGLLRLARG---GMR-----------------AGEGGYGYLKEWLWWAGLLTMI 61 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCC-----------------CCCCCCHHHHCCHHHHHHHHHH
T ss_conf 83148999999987657624554315989998860---565-----------------6678731450829998789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH---------
Q ss_conf 66887533466665334589999999769999999974202356437999999998656556623688520---------
Q gi|254780575|r 99 TILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPL--------- 169 (316)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------- 169 (316)
. .....+.+....+....+++.....++..+++....+||.+...+.+..+.+.|............
T Consensus 62 ~----Gei~nF~Ay~FAPasLVtPLgalsvi~naila~~~L~E~l~~~~~~G~~l~i~GsvliV~~ap~~~~~~t~~el~ 137 (300)
T pfam05653 62 V----GEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVLCIVGSTVIVIHAPKEQEIESVREVW 137 (300)
T ss_pred H----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEHEEEEEECEEEEEECCCCCCCCCCHHHHH
T ss_conf 8----668889999831799886241689999999999997266601000010103313045574278767789999999
Q ss_pred -------H--HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH--HHHH-----HHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf -------5--77999998653210001123444225788999999--8777-----753100134565678725667886
Q gi|254780575|r 170 -------L--SLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAI--PALF-----YVVWNGFSGGEHFFLGNIPDTLFL 233 (316)
Q Consensus 170 -------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l 233 (316)
. ..................+..+.....+....... .... .........+......+..| .++
T Consensus 138 ~~~~~p~Fl~Y~~~~~~~~~~l~~~~~pr~g~~~~~vy~~icsliGs~sVl~~K~~~~~i~~t~~G~nq~~~~~ty-~ll 216 (300)
T pfam05653 138 NLATDPGFLVYVILVVGVVLILIFFVEPRHGQTNILVYITICSLIGSLTVMSVKALGIAIKLTFSGKNQLGYPQFW-IFL 216 (300)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHH-HHH
T ss_conf 9951963899999999999999987242237423564215766551379999999999999995795163154899-999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHCC--CCCHHHH----HHHHHHHHHHHHHHH
Q ss_conf 53344211579999999862586999999999-999999999999788--8998999----999999999999999
Q gi|254780575|r 234 IGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYT-APLLMIVSSVFILKQ--PIDTVRT----IVFGIVVIAMVVYLL 302 (316)
Q Consensus 234 ~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l-~Pv~a~i~~~~~l~E--~~~~~~~----iG~~lIi~gv~l~~~ 302 (316)
...+.+...-....++|+++-+++.+.++.|. -...+++-|.++++| ..+..++ .|..+++.|+.+.+.
T Consensus 217 ~~lv~~~~~Qi~yLNkAL~~fdts~V~PiyyV~fT~~~Iiag~I~F~e~~~~~~~~i~~~~~Gf~~i~~GV~lL~~ 292 (300)
T pfam05653 217 VVVVTCVVTQINYLNKALDIFNTSIVTPVYYVFFTTSVIAASAILFKEWLGQSFDDIAGELCGFFTILLGTFLLHA 292 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEEC
T ss_conf 9999999999999999986468737723799999999997252454300369899999999999998661047763
No 38
>pfam06800 Sugar_transport Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.
Probab=98.04 E-value=0.00016 Score=41.56 Aligned_cols=197 Identities=12% Similarity=0.070 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----HHHHHHCCCCCC--
Q ss_conf 3466688753346666533458999999-976999999997420235643799999999865----655662368852--
Q gi|254780575|r 96 FSATILAVHWGFFIYALLTRQGFLTSFS-YFVTPVISVFLGSVFLKERLNHLQIIAALLIIL----SLLIMTLHSGIP-- 168 (316)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~-- 168 (316)
..+..-.......+.+.....++.+.++ .-...+-..+.+...++|+....++....++++ |+..........
T Consensus 49 isG~~WaiGQ~~Qf~s~~~~GVS~tmPiSTg~QLvg~sL~Gv~~fgEW~t~~~~~~G~~Al~liiiG~~lTs~~~~~~~~ 128 (268)
T pfam06800 49 ISGAFWAIGQIGQFKSFKLIGVSKTMPISTGFQLVGTSLFGVLVFGEWSTSMQKILGFLALILIIIGIYLTSLQDKKEAK 128 (268)
T ss_pred HHHHHHHHHHHHHHEEEEEECCEEEEEEEHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
T ss_conf 98999986343142252330210233102318999888998710044651789999999999999727137631365556
Q ss_pred -----H---HHH---HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -----0---577---99999865321000112344422578899999987777531001345656787256678865334
Q gi|254780575|r 169 -----L---LSL---AIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYG 237 (316)
Q Consensus 169 -----~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 237 (316)
. ... .....|..|....+....+.......+.......+..+... .... ......+. -...+
T Consensus 129 ~~~~~~~~kgi~~LlistiGY~~Y~v~p~~~~~~g~~~~lPQaiGm~iga~i~~~~-----~~~~-~~~k~~~~-nii~G 201 (268)
T pfam06800 129 VESSKNLKKGIILLLISTIGYVGYVVLPQLFKVDGLSAILPQAIGMVIGALIFSLK-----NFKV-FFEKYTWL-NIIPG 201 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECHHHHHHHHHHHHHHHH-----CCCC-CHHHHHHH-HHHHH
T ss_conf 76511055276788667413621545488608873313617789999999999984-----5543-13577999-87656
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHHHHHH
Q ss_conf 4211579999999862586999999999999999999999788899899----9999999999999
Q gi|254780575|r 238 LLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVR----TIVFGIVVIAMVV 299 (316)
Q Consensus 238 ~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~----~iG~~lIi~gv~l 299 (316)
+.=.++.+.+..+.+..+.+..=.++=+..+++.+-|.++|||+=|..+ ++|.+||++|.++
T Consensus 202 ~~w~ignl~~~~S~~~~GvatafslSQl~VVISTlGGI~~L~EkKtkkem~~~i~G~iLIv~Gail 267 (268)
T pfam06800 202 LFWGIGNLFMLISAQKVGVATAFSLSQLGVVISTLGGIFFLGEKKTKKEMIAVIIGIILIIVGAVL 267 (268)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHEE
T ss_conf 999999999986246218022345776666997611234760357503577899988898633111
No 39
>pfam03151 TPT Triose-phosphate Transporter family. This family includes transporters with a specificity for triose phosphate.
Probab=98.04 E-value=0.00029 Score=40.13 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 788653344211579999999862586999999999999999999999788899899999999999999999
Q gi|254780575|r 230 TLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 230 ~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
+..+...++....-...-+..+++.+|.+.++....--++.++++++++||++++.+++|.++.+.|+..++
T Consensus 77 ~~~l~~~g~~~f~~n~~~f~~i~~~s~lt~~v~g~~K~~~~i~~s~~~f~~~~t~~~~~G~~i~~~G~~~Y~ 148 (149)
T pfam03151 77 VLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDPVTFLNILGLAIAILGVVLYS 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999830358999999998888897675542189685899999999999898502
No 40
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.00 E-value=5.1e-05 Score=44.28 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34421157999999986258699-9999999999999999999788899899999999999999999999
Q gi|254780575|r 236 YGLLNSFVFCIFSYGIKRAKLST-VGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPT 304 (316)
Q Consensus 236 ~~~~t~i~~~~~~~a~~~~~a~~-~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~ 304 (316)
..++-.+++++...++|++|.+. .++-.-+-.+...+.|++++||++++.+++|..+|+.|+++.++..
T Consensus 36 ~~~~y~~sf~~Ls~alk~ipvgvaYAiWsG~Gi~~~~iig~~~f~e~~~~~~~lGi~lIi~Gvv~lnL~s 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999999999638835689999878999999999999679897999999999999898410035
No 41
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.95 E-value=5.3e-05 Score=44.16 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 34421157999999986258699-99999999999999999997888998999999999999999999
Q gi|254780575|r 236 YGLLNSFVFCIFSYGIKRAKLST-VGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLL 302 (316)
Q Consensus 236 ~~~~t~i~~~~~~~a~~~~~a~~-~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~ 302 (316)
..++-..++++...++|.+|.+. .++-+-+-.+...+.|++++||++++..++|..+|+.|+++.++
T Consensus 41 ~i~~y~~sf~~Ls~alk~iplgvaYAiWsGlGiv~~~~~g~~~f~q~l~~~~~~Gi~lIi~GVv~lnL 108 (109)
T PRK10650 41 SLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEC
T ss_conf 99999999999999992186488999998589999999999996788988999999999998840424
No 42
>pfam08449 UAA UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine.
Probab=97.90 E-value=0.00094 Score=37.37 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H--CCCCHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHCCCCCHHH
Q ss_conf 01452779999999999999999999999-6--389889999999999999999999997--100001122103500112
Q gi|254780575|r 18 NASLPTMMGTLFVFCAYILWGITPLYTQF-L--EQVSVLEVISHRVLWSLPGVFFAIVYF--SGGLSLLKDTLKNPKAVG 92 (316)
Q Consensus 18 ~~~~~~~~G~~~~l~a~~lwg~~~~~~k~-l--~~~~p~~i~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 92 (316)
+.......|+++++.+.++=|..+...+. . .+.++.+..++-..++.+......... ....+...-..+++..+.
T Consensus 147 ~~~~~~~~G~~ll~~sl~~d~~~~~~qe~l~~~~~~~~~e~m~y~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~p~~~~ 226 (303)
T pfam08449 147 LTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKEMMFYSNLLSLPFFLLGLLDIRTGLLFSAESFCLRHPSVLF 226 (303)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 45421058999999999999989999999998749898999999999999999999999862346767899863929999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 334346668875334666653345899999997699999999742023564379999999986565566236
Q gi|254780575|r 93 MLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH 164 (316)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 164 (316)
.....+.........-+.-....+....+.....==.+.++++....+++.+..+|.+..+.+.|.......
T Consensus 227 ~l~~~~l~~~~~~~~if~li~~~salt~~iv~t~Rk~~sillSv~~F~~~lt~~~~~G~~lvf~G~~~y~~~ 298 (303)
T pfam08449 227 YLLLNSLTQYVGQFFVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAYL 298 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998807899999999999999999987449968589999999999999999995
No 43
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.00013 Score=42.09 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 344211579999999862586999-99999999999999999978889989999999999999999999
Q gi|254780575|r 236 YGLLNSFVFCIFSYGIKRAKLSTV-GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLP 303 (316)
Q Consensus 236 ~~~~t~i~~~~~~~a~~~~~a~~~-s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~ 303 (316)
..++-.+++.+...++|++|.+.+ ++..=+-.+..++.|+++|||++++.+++|..+|++|++...+.
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999840852789999998999999999997607847799999999999999986304
No 44
>pfam03151 TPT Triose-phosphate Transporter family. This family includes transporters with a specificity for triose phosphate.
Probab=97.86 E-value=0.0011 Score=36.93 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-----CCCCCHHHHH
Q ss_conf 999999999999999999999-63-----898899999999999999999999971000011221-----0350011233
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQF-LE-----QVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDT-----LKNPKAVGML 94 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~-l~-----~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 94 (316)
|+++++.|.++.+.-.++.|. ++ ..+|.++..+=...+.+.+++.......+....... ..........
T Consensus 1 Gf~~~l~s~~~~alr~vl~q~ll~~~~~~~~~~~~l~~~~sp~s~i~llp~~~~~E~~~~~~~~~~~~~~~~~~~~~~~l 80 (149)
T pfam03151 1 GFILALAASALFALRLILSQKLLKKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKLGKSILKFFGDLKTSRYVLLL 80 (149)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999998348755686699999999999999999999971157546677664113326999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4346668875334666653345899999997699999999742023564379999999986565566
Q gi|254780575|r 95 VFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIM 161 (316)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 161 (316)
...+...+......+.....++..........--..+...+....+++.+...+++..+++.|....
T Consensus 81 ~~~g~~~f~~n~~~f~~i~~~s~lt~~v~g~~K~~~~i~~s~~~f~~~~t~~~~~G~~i~~~G~~~Y 147 (149)
T pfam03151 81 LLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDPVTFLNILGLAIAILGVVLY 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999983035899999999888889767554218968589999999999989850
No 45
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.85 E-value=0.0012 Score=36.85 Aligned_cols=136 Identities=17% Similarity=0.060 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 5277999999999999999999999963-898899999999999999999999971000011221035001123343466
Q gi|254780575|r 21 LPTMMGTLFVFCAYILWGITPLYTQFLE-QVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSAT 99 (316)
Q Consensus 21 ~~~~~G~~~~l~a~~lwg~~~~~~k~l~-~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (316)
.-...|+.+++.++.+|+..-++.|... +.++.. +..-+.++.....+.-...... .................
T Consensus 144 ~~d~~Gv~~aL~Aa~~wA~Yil~~~r~~~~~~~~~-la~~~~vaa~~~~p~~~~~~~~-----~~~~~~~l~~~l~vavl 217 (293)
T PRK10532 144 HVDLTGAALALGAGACWAIYILSGQRAGAEHGPAT-VAVGSLIAALIFVPIGALQAGE-----ALWHWSILPLGLAVAIL 217 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHH
T ss_conf 55668899999999999999999647325688402-6999999999999888760453-----32788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 688753346666533458999999976999999997420235643799999999865655662
Q gi|254780575|r 100 ILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMT 162 (316)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 162 (316)
....-+.+...+....+...........|.+..+.++...+|+++..++.++.+.+.......
T Consensus 218 ssviPY~Le~~aLrrl~a~~fgvL~slePa~Aal~G~llLgE~ls~~q~lGialVv~As~g~~ 280 (293)
T PRK10532 218 STALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 878999999999853788799999998899999999999568897999999999999999999
No 46
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=97.80 E-value=0.00053 Score=38.76 Aligned_cols=66 Identities=5% Similarity=-0.023 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4211579999999862586999999999-9999999999997888-------9989999999999999999999
Q gi|254780575|r 238 LLNSFVFCIFSYGIKRAKLSTVGIMEYT-APLLMIVSSVFILKQP-------IDTVRTIVFGIVVIAMVVYLLP 303 (316)
Q Consensus 238 ~~t~i~~~~~~~a~~~~~a~~~s~~~~l-~Pv~a~i~~~~~l~E~-------~~~~~~iG~~lIi~gv~l~~~~ 303 (316)
..=++++.-+..++++.+.|++-+++.= +-|.+.+++.+++||- +.-.+..+.+++++|+.+.+.+
T Consensus 75 ~~WalGQ~~q~~~~~~~GvS~tmPistG~QLv~~sL~gvivfgeW~~~~~~~~GRmt~lAl~liiiGv~lts~~ 148 (336)
T TIGR00776 75 AFWALGQINQFKSMRYIGVSKTMPISTGLQLVGGSLFGVIVFGEWSTSIQILLGRMTLLALILIIIGVYLTSIS 148 (336)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998754587777640202201456648999878775301224476310130549999999999999997302
No 47
>PRK11431 quaternary ammonium compound-resistance protein SugE; Provisional
Probab=97.72 E-value=0.00018 Score=41.31 Aligned_cols=67 Identities=9% Similarity=0.206 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4421157999999986258699-999999999999999999978889989999999999999999999
Q gi|254780575|r 237 GLLNSFVFCIFSYGIKRAKLST-VGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLP 303 (316)
Q Consensus 237 ~~~t~i~~~~~~~a~~~~~a~~-~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~ 303 (316)
+.+..+++++...++|.+|.+. .++-.=+--+-+++.|++++||++++.+++|..+|+.|++...+.
T Consensus 36 ~~~~~~sf~~Ls~alk~lpvg~aYAvWsGiG~vg~~~iG~~~f~e~~~~~~i~~i~lIi~GVv~Lkl~ 103 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECC
T ss_conf 99999999999999957987109999997999999999999917989899999999999999833114
No 48
>pfam06027 DUF914 Eukaryotic protein of unknown function (DUF914). This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as being putative membrane proteins.
Probab=97.67 E-value=0.0024 Score=35.20 Aligned_cols=144 Identities=13% Similarity=0.186 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 452779999999999999999999999-6389889999999999999999999997100001122103500112334346
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQF-LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSA 98 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~-l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (316)
..+..+|=++++.++.++|.+.+.-.+ +++.|+.|.+..=.+++.++-.+-...+.++.-.. ..+. ...........
T Consensus 163 g~n~l~GDll~L~gA~lYa~sNV~qE~~Vk~~~~~E~L~~lG~fg~iIs~iQ~~ilE~~~i~~-~~W~-~~~~~~~~gy~ 240 (335)
T pfam06027 163 GSNPVKGDFLVLAGATLYAVSNVTEEFLVKNLSRVELLGMLGLFGAIISGIQTAIFERKELKA-IHWD-WEIVLLFAGFA 240 (335)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC-CHHHHHHHHHH
T ss_conf 776541019999999999865756300023787999999999999999999999987988972-8546-31649999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6688753346666533458999999976999999997420235643799999999865655662368
Q gi|254780575|r 99 TILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS 165 (316)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 165 (316)
..++..+...-.-....+++.......+.-+..++......+++..+.-.++-.+..+|+.......
T Consensus 241 ~~lf~~Ysl~P~vl~~ssAt~~NLSlLTsd~y~v~~~i~~F~~~~~~LY~laF~lI~~Gl~iY~~~~ 307 (335)
T pfam06027 241 LCMFLFYSLMPILIKKTSATMFNLSLLTSDMWSLLIGIFLFHYKVDWLYFLAFATIAIGLIIYSMKE 307 (335)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEECCC
T ss_conf 9999999988999996538887798887669999999986267660899999999998653787278
No 49
>KOG4510 consensus
Probab=97.49 E-value=2e-05 Score=46.55 Aligned_cols=71 Identities=18% Similarity=0.354 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65334421157999999986258699999999999999999999978889989999999999999999999
Q gi|254780575|r 233 LIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLP 303 (316)
Q Consensus 233 l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~ 303 (316)
+++-++....+..+.++++++.+-+.++.+.+..|+++++++|.+|+|+.+.....|..+-+.|+++...+
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred EEEEHHHHHHHHHHHHHHHHHCCHHHEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEECC
T ss_conf 98521120468999999996204410379985273999999999975987589998877744158999428
No 50
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.47 E-value=4.4e-05 Score=44.65 Aligned_cols=261 Identities=10% Similarity=0.040 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999996389889999999999999999999997100001122103500112334346668875
Q gi|254780575|r 25 MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVH 104 (316)
Q Consensus 25 ~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
.+++.++.-++.||+.|...-...+-|-.|....- +++....+.++++..+. ............+..-...
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~GG~p~qQ~lGtT--~GALifaiiv~~~~~p~-------~T~~~~iv~~isG~~Ws~G 72 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFGGKPYQQTLGTT--LGALIFAIIVFLFVSPE-------LTLTIFIVGFISGAFWSFG 72 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCC--HHHHHHHHHHHEEECCC-------CCHHHHHHHHHHHHHHHHH
T ss_conf 63899997798704305035403797367664012--99999998773032676-------3255678998746676211
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH----HHCCCCC-----CHH--HH
Q ss_conf 3346666533458999999-9769999999974202356437999999998656556----6236885-----205--77
Q gi|254780575|r 105 WGFFIYALLTRQGFLTSFS-YFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLI----MTLHSGI-----PLL--SL 172 (316)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~-----~~~--~~ 172 (316)
+...+.+.+...++.+.++ .-...+-..+++.+.++|+....+.+....+.+.... ....... ... .-
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kk 152 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKK 152 (288)
T ss_pred HHHHHHHEEEEEEECCCCCCCHHHHHHCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHH
T ss_conf 25423210021000136665115675300066899701686145789999999998761575410444212147676652
Q ss_pred ------HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------99999865321000112344422578899999987777531001345656787256678865334421157999
Q gi|254780575|r 173 ------AIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCI 246 (316)
Q Consensus 173 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~ 246 (316)
...+.|..|.........+..+....+.......++.+.. ... ....+...|... .-++.=+++...
T Consensus 153 gi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~----~~~-~~~~~K~t~~ni--i~G~~Wa~GNl~ 225 (288)
T COG4975 153 GIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF----FKM-EKRFNKYTWLNI--IPGLIWAIGNLF 225 (288)
T ss_pred HEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH----CCC-CCCHHHHHHHHH--HHHHHHHHHHHH
T ss_conf 3235666312136657661001554132012778779999999865----156-530678899987--657888753889
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHH
Q ss_conf 99998625869999999999999999999997888998999----99999999999999
Q gi|254780575|r 247 FSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRT----IVFGIVVIAMVVYL 301 (316)
Q Consensus 247 ~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~----iG~~lIi~gv~l~~ 301 (316)
+..+-++++.++.=.++-+..+++.+-|.++|+|+=|..++ +|.++|+.|.++..
T Consensus 226 ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 226 MLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHHHCEEEEEEHHHHEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98760220501245475520002541238998314763661035446799987766632
No 51
>pfam05653 DUF803 Protein of unknown function (DUF803). This family consists of several eukaryotic proteins of unknown function.
Probab=97.44 E-value=1.4e-05 Score=47.31 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHH
Q ss_conf 7999999999999999999999--963898899999
Q gi|254780575|r 24 MMGTLFVFCAYILWGITPLYTQ--FLEQVSVLEVIS 57 (316)
Q Consensus 24 ~~G~~~~l~a~~lwg~~~~~~k--~l~~~~p~~i~~ 57 (316)
+.|.+.+..+.+.==..+.|.- ++...++..+.+
T Consensus 54 w~G~~~m~~Gei~nF~Ay~FAPasLVtPLgalsvi~ 89 (300)
T pfam05653 54 WAGLLTMIVGEAANFAAYAFAPATLVTPLGALSVII 89 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 987899998668889999831799886241689999
No 52
>KOG1583 consensus
Probab=97.41 E-value=0.00069 Score=38.11 Aligned_cols=189 Identities=18% Similarity=0.149 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC------------------HHHHHHHH---H--HHHH-H
Q ss_conf 999999997420235643799999999865655662368852------------------05779999---9--8653-2
Q gi|254780575|r 127 TPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIP------------------LLSLAIAV---T--WSAY-C 182 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~---~--~~~~-~ 182 (316)
.++..+..++...++|-+..+...+....+|++........+ +...+.+. + ..++ .
T Consensus 101 sll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mg 180 (330)
T KOG1583 101 SLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMG 180 (330)
T ss_pred CHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48999999998616530335546687653212047730376501343045557643122578998999999999999999
Q ss_pred ----HHHCCCCCCCCCHHHHHHHHHHHHHHHHH-----HHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----10001123444225788999999877775-----310013456-56787256678865334421157999999986
Q gi|254780575|r 183 ----FARKTIPVGSSEGFFIEMCVLAIPALFYV-----VWNGFSGGE-HFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIK 252 (316)
Q Consensus 183 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~ 252 (316)
..+++..+.....++++........++.. .+......+ ..-+.........+.-.++..+.++.=.+++-
T Consensus 181 iyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy 260 (330)
T KOG1583 181 IYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVY 260 (330)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999856891888899987133149883440899999973276333155685153899999999999988888666
Q ss_pred HC----CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC
Q ss_conf 25----869999999999999999999997888998999999999999999999999998-7755621
Q gi|254780575|r 253 RA----KLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINS-GKNKTKK 315 (316)
Q Consensus 253 ~~----~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~-~k~~~~k 315 (316)
.+ ++-++++...+.-.++.+++++.|+.++++..|+|..++..|.+++...-.+.+ .|.+.||
T Consensus 261 ~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~~~k~~~kk 328 (330)
T KOG1583 261 ILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPKATKGAIKK 328 (330)
T ss_pred HHHCEECCEEEEEEEEHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 43411111699874348989988420347548897899987999999999999987275655554023
No 53
>KOG1442 consensus
Probab=97.28 E-value=0.00025 Score=40.52 Aligned_cols=189 Identities=15% Similarity=0.083 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHHHHHHCCCCCCCCC-HHH
Q ss_conf 9999999974202356437999999998656556623688520--------5779999986532100011234442-257
Q gi|254780575|r 127 TPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPL--------LSLAIAVTWSAYCFARKTIPVGSSE-GFF 197 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (316)
...+.+++.....++|.+.....+.++.+.|-.+...+.+... .+....++.+......++....... ...
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~ 217 (347)
T KOG1442 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWR 217 (347)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEHHHEEHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEHH
T ss_conf 34599886774111553332010004110301232024355675430351899999999999887640111666673013
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC--C----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 88999999877775310013456--5----67872566788653344211579999999862586999999999999999
Q gi|254780575|r 198 IEMCVLAIPALFYVVWNGFSGGE--H----FFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMI 271 (316)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~ 271 (316)
.+.+......+.+........+. . ..+....|..+...+.+.-.++|.. .+-+|-.+|.+-.+-....-..-.
T Consensus 218 lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQT 296 (347)
T KOG1442 218 LTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQT 296 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEECCCCEEEECHHHHHHHHH
T ss_conf 4888778899999999998151888708531218899999999877777764225-689996066534301868999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999788899899999999999999999999999877556219
Q gi|254780575|r 272 VSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTKKS 316 (316)
Q Consensus 272 i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~k~ 316 (316)
++++.+++|..+..-|-+-++|+.|...+++.+.+..||+....|
T Consensus 297 vlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s 341 (347)
T KOG1442 297 VLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRS 341 (347)
T ss_pred HHHHHHHHHHHHHHEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999987765550010587774058999999998875025899
No 54
>KOG2766 consensus
Probab=97.25 E-value=0.00011 Score=42.53 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHH
Q ss_conf 45277999999999999999999999963--89-8899999999999999999999971000011221035001123343
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQFLE--QV-SVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVF 96 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~l~--~~-~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (316)
..+.+.|+.+.=.-+++--.+......++ +. .|..-.|.-+..-++.--. ...+|+ +..+..+++...+...-.
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~-~~~fR~--~~~~~~~~hYilla~~DV 89 (336)
T KOG2766 13 TKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGP-IMLFRR--KYIKAKWRHYILLAFVDV 89 (336)
T ss_pred CHHHHHEEEHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHEEEEEE
T ss_conf 13411000288899999971145469887354788408889999999998726-887655--778999987651258861
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC---------CCC
Q ss_conf 46668875334666653345899999997699999999742023564379999999986565566236---------885
Q gi|254780575|r 97 SATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH---------SGI 167 (316)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------~~~ 167 (316)
-. .+....+.++++......+--.....+..+.|.+.+.|-+..+..++++++.|+...... +++
T Consensus 90 -----Ea-Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsn 163 (336)
T KOG2766 90 -----EA-NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSN 163 (336)
T ss_pred -----CC-CEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCEEEEEEEEECCCCCCCCCC
T ss_conf -----16-488864022232477788887444799999999999888620020387675246999985411356468999
Q ss_pred C---HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2---0577999998653210001123444225788999999877775310013456567872566788653344211579
Q gi|254780575|r 168 P---LLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVF 244 (316)
Q Consensus 168 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~ 244 (316)
. +....++....+..........++.+............+.+-.. ...........-...|....++. ..+..
T Consensus 164 p~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaI-Q~i~~~~~~~tl~w~~~i~~yl~---f~L~M 239 (336)
T KOG2766 164 PVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAI-QFIFERHHVSTLHWDSAIFLYLR---FALTM 239 (336)
T ss_pred CCCCCEEEEECCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHCCCEEEEEEHHHHHHHHH---HHHHH
T ss_conf 755757999255533310200999873674999999999999999999-87651261236761477899999---99999
Q ss_pred HHHHH----HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999----9862586999999999999999999999788899899999999999999999999999877
Q gi|254780575|r 245 CIFSY----GIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGK 310 (316)
Q Consensus 245 ~~~~~----a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k 310 (316)
++++. .+|.-+++...+-....-.++.+. ..||-..+|.-.+..+.|..|.+++...+..++..
T Consensus 240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~e~ 307 (336)
T KOG2766 240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEEEL 307 (336)
T ss_pred HHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHH--HHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCHHH
T ss_conf 999986577354377418970676777999999--99750021112999999987518863334681765
No 55
>pfam04142 Nuc_sug_transp Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human solute carrier family 35 member A1 transports CMP-sialic acid, solute carrier family 35 member A2 transports UDP-galactose and solute carrier family 35 member A3 transports UDP-GlcNAc.
Probab=97.22 E-value=0.0014 Score=36.42 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 77999999999999999999999-96389889999---99999999999999999710000
Q gi|254780575|r 23 TMMGTLFVFCAYILWGITPLYTQ-FLEQVSVLEVI---SHRVLWSLPGVFFAIVYFSGGLS 79 (316)
Q Consensus 23 ~~~G~~~~l~a~~lwg~~~~~~k-~l~~~~p~~i~---~~R~~~a~~~l~~~~~~~~~~~~ 79 (316)
+.+..+-...-++++.......- .+..+||.... -.|.+.++. +....++|+..
T Consensus 13 ~~~~~lk~aVPa~lY~~qN~l~~~~l~~l~~~t~qvl~q~Kil~tA~---~~~~~l~r~lS 70 (238)
T pfam04142 13 NPSDTLKVAVPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTAL---FSVLMLGRKLS 70 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---HHHHHHCCCCC
T ss_conf 97988999899999999853999999809929999998379999999---99999869475
No 56
>KOG1582 consensus
Probab=97.12 E-value=0.012 Score=31.40 Aligned_cols=174 Identities=12% Similarity=0.064 Sum_probs=101.5
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH---HHHHHHHCCCCCCCCCHHH---
Q ss_conf 99997420235643799999999865655662368-------8520577999998---6532100011234442257---
Q gi|254780575|r 131 SVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS-------GIPLLSLAIAVTW---SAYCFARKTIPVGSSEGFF--- 197 (316)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--- 197 (316)
+.+.+.+..++|-.....++..+..+|++...... +..+.....+... ......-+..+..+...+.
T Consensus 146 VmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~Emvf 225 (367)
T KOG1582 146 VMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVF 225 (367)
T ss_pred HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 34200120564056999999999999889730213555898661249999769999988607999998647998624787
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999998777753100-13456-5678725667886533442115799999998625869999999999999999999
Q gi|254780575|r 198 IEMCVLAIPALFYVVWNG-FSGGE-HFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSV 275 (316)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~ 275 (316)
.................. ....+ ...-.+.......++-...+.++...-...++.-+|..++.++...--+++++++
T Consensus 226 ySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSf 305 (367)
T KOG1582 226 YSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSF 305 (367)
T ss_pred EEECCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 64022679998899861641555388872947677799999998676599999999983606878888878789999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99788899899999999999999999999
Q gi|254780575|r 276 FILKQPIDTVRTIVFGIVVIAMVVYLLPT 304 (316)
Q Consensus 276 ~~l~E~~~~~~~iG~~lIi~gv~l~~~~~ 304 (316)
++|..++|....-|+.+|+.|+++...++
T Consensus 306 llFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582 306 LLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98767327987545499999788410147
No 57
>pfam06800 Sugar_transport Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.
Probab=96.95 E-value=0.0082 Score=32.25 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHH
Q ss_conf 4527799999999999999999999996389889999999---9999999999999971000011221035001123343
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHR---VLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVF 96 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R---~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (316)
.+...+|+++.+.+++-+..-.++.|+. ++++.++..=. +++++. ....++++. .+++...++....+..
T Consensus 132 ~~~~~kgi~~LlistiGY~~Y~v~p~~~-~~~g~~~~lPQaiGm~iga~----i~~~~~~~~--~~~k~~~~nii~G~~w 204 (268)
T pfam06800 132 SKNLKKGIILLLISTIGYVGYVVLPQLF-KVDGLSAILPQAIGMVIGAL----IFSLKNFKV--FFEKYTWLNIIPGLFW 204 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHEECHHHHHHHHHHH----HHHHHCCCC--CHHHHHHHHHHHHHHH
T ss_conf 1105527678866741362154548860-88733136177899999999----999845543--1357799987656999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 466688753346666533458999999976999999997420235643799999999865655
Q gi|254780575|r 97 SATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLL 159 (316)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 159 (316)
. .....++.+.+....+.+...-....++..+.+-..++||-.+.+......+.+.+.
T Consensus 205 ~-----ignl~~~~S~~~~GvatafslSQl~VVISTlGGI~~L~EkKtkkem~~~i~G~iLIv 262 (268)
T pfam06800 205 G-----IGNLFMLISAQKVGVATAFSLSQLGVVISTLGGIFFLGEKKTKKEMIAVIIGIILII 262 (268)
T ss_pred H-----HHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9-----999999862462180223457766669976112347603575035778999888986
No 58
>KOG2765 consensus
Probab=96.92 E-value=0.018 Score=30.37 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 277999999999999999999999
Q gi|254780575|r 22 PTMMGTLFVFCAYILWGITPLYTQ 45 (316)
Q Consensus 22 ~~~~G~~~~l~a~~lwg~~~~~~k 45 (316)
+..+|+.+.+.-.++|=.+.-..+
T Consensus 11 r~~lGl~lL~~V~viWV~SSeLT~ 34 (416)
T KOG2765 11 RWTLGLVLLLLVVVIWVASSELTQ 34 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888888999999999986999999
No 59
>KOG2922 consensus
Probab=96.76 E-value=0.0058 Score=33.09 Aligned_cols=254 Identities=16% Similarity=0.118 Sum_probs=132.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 452779999999999999999999999-6389889999999999999999999997100001122103500112334346
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQF-LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSA 98 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~-l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (316)
+.....|..+++.+++..|.+.+..|. +..... ...|.- .......+.+.++..+...+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra~-----------------~gg~~yl~~~~Ww~G~ltm~ 75 (335)
T KOG2922 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRAG-----------------EGGYGYLKEPLWWAGMLTMI 75 (335)
T ss_pred CCCCEEEEEEHHHCCEEEEEEHHHHHHHHHHHHH---HCCCCC-----------------CCCCCHHHHHHHHHHHHHHH
T ss_conf 5576156543330657874103455777898864---123446-----------------79840556378997889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC----------
Q ss_conf 6688753346666533458999999976999999997420235643799999999865655662368852----------
Q gi|254780575|r 99 TILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIP---------- 168 (316)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------- 168 (316)
..-.. .+.+.........+++-....+....++..+.+|+.+....++..+++.|-.......-..
T Consensus 76 vGei~----NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~ 151 (335)
T KOG2922 76 VGEIA----NFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVW 151 (335)
T ss_pred HHHHH----HHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCCCHHHHH
T ss_conf 88675----57887503476635330577889999999999988878645303678605179998268645555699999
Q ss_pred ---------HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH--------HHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf ---------057799999865321000112344422578899999987--------777531001345656787256678
Q gi|254780575|r 169 ---------LLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPA--------LFYVVWNGFSGGEHFFLGNIPDTL 231 (316)
Q Consensus 169 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 231 (316)
.................+.... ......+........+ +.... -....+......+..|..
T Consensus 152 ~~~~~~~Fliy~~~iil~~~il~~~~~p~~g-~tnilvyi~i~s~iGS~tV~svKalg~ai-klt~~g~~ql~~~~ty~~ 229 (335)
T KOG2922 152 ELATEPGFLVYVIIIILIVLILIFFYAPRYG-QTNILVYIGICSLIGSLTVMSVKALGIAI-KLTFSGNNQLFYPLTWIF 229 (335)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHEEECCCCC-CCCEEEHHHHHHHHCCEEEEEHHHHHHHH-HHHHCCCCCCCCHHHHHH
T ss_conf 9823941778999999999988406420136-54155254476554230234388889999-998658850045899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHCCC--CCH----HHHHHHHHHHHHHHHH
Q ss_conf 86533442115799999998625869999999999-999999999997888--998----9999999999999999
Q gi|254780575|r 232 FLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTA-PLLMIVSSVFILKQP--IDT----VRTIVFGIVVIAMVVY 300 (316)
Q Consensus 232 ~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~-Pv~a~i~~~~~l~E~--~~~----~~~iG~~lIi~gv~l~ 300 (316)
.+. ...+...-....++|++.-+++.++++.|.. .-++++-+.+++.|- .+. ....|+..|+.|+.+.
T Consensus 230 ~l~-~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL 304 (335)
T KOG2922 230 LLV-VATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLL 304 (335)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEE
T ss_conf 999-999999999999999876223310154889999999998788998860796899999997477763023686
No 60
>pfam00893 Multi_Drug_Res Small Multidrug Resistance protein. This family is the Small Multidrug Resistance (SMR) family. Several members have been shown to export a range of toxins, including ethidium bromide and quaternary ammonium compounds, through coupling with proton influx.
Probab=96.75 E-value=0.0077 Score=32.40 Aligned_cols=57 Identities=11% Similarity=0.227 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 44211579999999862586999-9999999999999999997888998999999999
Q gi|254780575|r 237 GLLNSFVFCIFSYGIKRAKLSTV-GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIV 293 (316)
Q Consensus 237 ~~~t~i~~~~~~~a~~~~~a~~~-s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lI 293 (316)
...-.+++++...++|++|.+.+ ++-.-+.-+...+.|++++||++++.+++|..+|
T Consensus 36 ~~~~~~sf~~Ls~alk~lpvgvAYAiW~GiG~~~~~~ig~~~f~e~~~~~~~~gi~LI 93 (93)
T pfam00893 36 IVGYGISFYLLSKALKSIPLGVAYAVWSGIGTVGTTLVGILLFGEPLSLKKIIGLALI 93 (93)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEC
T ss_conf 9999999999999996685198999999899999999999994799988988771009
No 61
>KOG1441 consensus
Probab=96.72 E-value=0.026 Score=29.49 Aligned_cols=116 Identities=14% Similarity=0.102 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78899999987777531001345656787256678865334421157999999986258699999999999999999999
Q gi|254780575|r 197 FIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVF 276 (316)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~ 276 (316)
..+....+....................+....+..++-......++..+-+.++++++.+.+.+.-.++|++.++++++
T Consensus 50 ~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~ 129 (316)
T KOG1441 50 TLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVL 129 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999999999999999995678877666542068889999999888872513132141129999986264367888999
Q ss_pred HHCCCCCH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97888998----------------------9999999999999999999999987755
Q gi|254780575|r 277 ILKQPIDT----------------------VRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 277 ~l~E~~~~----------------------~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
+.+|+.+. ..+.|.+.-++++..........++..+
T Consensus 130 ~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~ 187 (316)
T KOG1441 130 LLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLT 187 (316)
T ss_pred HHCCCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8078776117899877441278864045654288899999999999999999987653
No 62
>pfam04657 DUF606 Protein of unknown function, DUF606. This family includes several uncharacterized bacterial proteins.
Probab=96.27 E-value=0.052 Score=27.89 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHH-HH---CCCCCHHHHHHHHHHHHHHH
Q ss_conf 344211579999999862586999999999-99999999999-97---88899899999999999999
Q gi|254780575|r 236 YGLLNSFVFCIFSYGIKRAKLSTVGIMEYT-APLLMIVSSVF-IL---KQPIDTVRTIVFGIVVIAMV 298 (316)
Q Consensus 236 ~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l-~Pv~a~i~~~~-~l---~E~~~~~~~iG~~lIi~gv~ 298 (316)
+++....--.......+++++..+...... +-+.+.+++.+ ++ .++++..+++|.++++.|+.
T Consensus 71 GG~lGa~~V~~~~~~vp~lG~~~~~~~~v~GQli~sl~iD~fGl~g~~~~~~~~~ri~G~~l~i~Gv~ 138 (139)
T pfam04657 71 GGLLGAFYVTLNILLVPRLGAALTVVLVIAGQLLMSLLIDHFGLFGLPKRPLSLTRLLGLLLMLAGVV 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999980324899999999999999999996445588887788999999999999986
No 63
>KOG2922 consensus
Probab=96.24 E-value=0.00024 Score=40.59 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999862586999999999999999999999788899
Q gi|254780575|r 245 CIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPID 283 (316)
Q Consensus 245 ~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~ 283 (316)
..+++--...++. .+..++--.+.++.|.+++++.-+
T Consensus 273 ~I~Fkew~~~~~~--~i~~~~~Gf~ti~~G~flL~~~kd 309 (335)
T KOG2922 273 AILFKEWSGQDAL--DIAGELCGFVTIFLGIFLLHRTKD 309 (335)
T ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHHHHEEEEEEEECC
T ss_conf 8899886079689--999999747776302368665212
No 64
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator; InterPro: IPR004696 Functionally characterised members of the 6-8 TMS Triose-phosphate Transporter (TPT) family are derived from the inner envelope membranes of chloroplasts and non-green plastids of plants. Under normal physiological conditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi) , . Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into the cytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by a channel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrate concentrations. Non-green plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated at carbon atom 2, particularly phosphoenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be a substrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substrate specificities overlap. TPT paralogues are also present in Saccharomyces cerevisiae, which are functionally uncharacterised. ; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=96.07 E-value=0.057 Score=27.64 Aligned_cols=277 Identities=16% Similarity=0.091 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HH-HCC-CCHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999999999999-99-638-98899999999999999999999971---00001122103500112334346
Q gi|254780575|r 25 MGTLFVFCAYILWGITPLYT-QF-LEQ-VSVLEVISHRVLWSLPGVFFAIVYFS---GGLSLLKDTLKNPKAVGMLVFSA 98 (316)
Q Consensus 25 ~G~~~~l~a~~lwg~~~~~~-k~-l~~-~~p~~i~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 98 (316)
.|..+.+-..+.-.++.+.- |- +.- --|...+...+..+.+. .+.. +-....+....+...+....-.+
T Consensus 3 ~g~~F~~w~~lnv~FnsI~N~k~~~~~~~~p~~~~l~~l~~G~l~-----~~~~GnfW~~~L~k~~~~~~~~l~~~~Pva 77 (346)
T TIGR00817 3 TGLLFGLWYFLNVYFNSIYNLKKVLNVFPYPFIVTLISLAVGSLL-----KLLSGNFWSSGLKKRLKISSALLKLLLPVA 77 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-----HHHCCCCCEECCCCCCCCCHHHHHHHCCHH
T ss_conf 468899999998786545544420233444277778878889999-----987264010012101240288999873332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHH----------HHHCC-CC
Q ss_conf 668875334666653345899999997699999999742023564379999-9999865655----------66236-88
Q gi|254780575|r 99 TILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQII-AALLIILSLL----------IMTLH-SG 166 (316)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~----------~~~~~-~~ 166 (316)
..-.........+.....+..+-.+-...|.+.+....++.++..+...|. .+.-.+.|+. ..... .+
T Consensus 78 v~~~~Gh~~~~~S~~~v~VSftH~iKA~eP~F~v~~s~~f~g~~~p~~~w~~SL~piv~GV~ttCWsthGsk~As~te~s 157 (346)
T TIGR00817 78 VVHTIGHVTSNVSLSKVAVSFTHTIKALEPFFSVVLSAFFLGQEFPLTLWLISLLPIVGGVATTCWSTHGSKLASLTELS 157 (346)
T ss_pred EEHCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 11101331054356310202115412445899999999874840025899999999997431010102430355454124
Q ss_pred CCHHHHHHHHH----HHHHHHHHCCCCCCC----------------------CCHHHHHHHHH-HHHHHHHHHHHHC-CC
Q ss_conf 52057799999----865321000112344----------------------42257889999-9987777531001-34
Q gi|254780575|r 167 IPLLSLAIAVT----WSAYCFARKTIPVGS----------------------SEGFFIEMCVL-AIPALFYVVWNGF-SG 218 (316)
Q Consensus 167 ~~~~~~~~~~~----~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~-~~~~~~~~~~~~~-~~ 218 (316)
.++.+...+.. ...-....++....+ .+.......+. -...++...+..+ ..
T Consensus 158 fn~~Gf~~AmiS~~~f~~rni~sKK~m~~krkvGilPssstddvtskeG~~S~D~~~~~~~isdki~~lf~~~p~~f~~~ 237 (346)
T TIGR00817 158 FNWLGFLSAMISNLTFVSRNIFSKKAMTKKRKVGILPSSSTDDVTSKEGEESLDKTNLYAYISDKIMSLFLLSPVAFIVE 237 (346)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54488998788888887765564113533424542156764444345788650001027668989999999977899862
Q ss_pred C----------C-CCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 5----------6-56787256678865334-4211579999999862586999999999999999999999788899899
Q gi|254780575|r 219 G----------E-HFFLGNIPDTLFLIGYG-LLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVR 286 (316)
Q Consensus 219 ~----------~-~~~~~~~~~~~~l~l~~-~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~ 286 (316)
+ . ........+...++... +....---.-+..+.+++|-+-|+-..+==++-+..++++++.++++.+
T Consensus 238 g~~~~~~~~~~~~s~~~~~~~~t~~l~a~~g~~H~yqAqv~~~~L~~vSplT~SvgN~~KRv~VI~~S~~ff~t~i~~~~ 317 (346)
T TIGR00817 238 GPKFLPRGFLQAISKVNVNKIYTVSLVAALGFFHLYQAQVSYMLLGRVSPLTHSVGNVMKRVVVIVVSIVFFGTKISPVN 317 (346)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCHHH
T ss_conf 10245778753331134022577999999999999999999988886513577544242013466666320148652357
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780575|r 287 TIVFGIVVIAMVVYLLPTVI 306 (316)
Q Consensus 287 ~iG~~lIi~gv~l~~~~~~~ 306 (316)
.+|.++-++|+++++.-+..
T Consensus 318 ~~G~~iaiaG~flYs~~~~~ 337 (346)
T TIGR00817 318 VFGTGIAIAGVFLYSRVKAQ 337 (346)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999999999875000
No 65
>KOG3912 consensus
Probab=95.81 E-value=0.086 Score=26.68 Aligned_cols=198 Identities=11% Similarity=0.065 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC---C-----C---CCHHHHH
Q ss_conf 334666653345899999997699999999742023564379999999986565566236---8-----8---5205779
Q gi|254780575|r 105 WGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLH---S-----G---IPLLSLA 173 (316)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~-----~---~~~~~~~ 173 (316)
....+.+...+++..--..--...+++.+++..+.++++...+|.++....+|+...... . + .......
T Consensus 100 sslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdl 179 (372)
T KOG3912 100 SSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDL 179 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 48999888875678999860505233499899998630302468999999964640454200035687444333201018
Q ss_pred HH-----HHHHHHHHHHCCCCCCCCCHHHHHHH---HH-HHHHHHHHHHHHCCCCCCCCCCC----HHHH---------H
Q ss_conf 99-----99865321000112344422578899---99-99877775310013456567872----5667---------8
Q gi|254780575|r 174 IA-----VTWSAYCFARKTIPVGSSEGFFIEMC---VL-AIPALFYVVWNGFSGGEHFFLGN----IPDT---------L 231 (316)
Q Consensus 174 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------~ 231 (316)
+. +....+.+-.+..+..+..+....-+ .. ...............+++...++ .+|. .
T Consensus 180 lIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p 259 (372)
T KOG3912 180 LIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESP 259 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999999987655333678788765401577999999987872100688676897743056799999844895
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8653344211579999999----8625869999999999999999999997888998999999999999999999
Q gi|254780575|r 232 FLIGYGLLNSFVFCIFSYG----IKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLL 302 (316)
Q Consensus 232 ~l~l~~~~t~i~~~~~~~a----~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~ 302 (316)
.+++...+..+.-.+|+.+ -|..++++-..+..+...+==+++..+..|.++..|+.|.++.+.|++++.-
T Consensus 260 ~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912 260 SLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 158987535332032330356787886578899998665446557689878899999999999999999999987
No 66
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator; InterPro: IPR004696 Functionally characterised members of the 6-8 TMS Triose-phosphate Transporter (TPT) family are derived from the inner envelope membranes of chloroplasts and non-green plastids of plants. Under normal physiological conditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi) , . Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into the cytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by a channel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrate concentrations. Non-green plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated at carbon atom 2, particularly phosphoenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be a substrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substrate specificities overlap. TPT paralogues are also present in Saccharomyces cerevisiae, which are functionally uncharacterised. ; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=95.80 E-value=0.088 Score=26.65 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=81.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 12344422578899999987777531---001345656787256678865334421157999999986258699999999
Q gi|254780575|r 188 IPVGSSEGFFIEMCVLAIPALFYVVW---NGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEY 264 (316)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~ 264 (316)
.......+...+........+....- ...........+...+. .+.-..++..+++..-+.++..++.+.+-.+-.
T Consensus 26 ~~~~~~~p~~~~l~~l~~G~l~~~~~GnfW~~~L~k~~~~~~~~l~-~~~Pvav~~~~Gh~~~~~S~~~v~VSftH~iKA 104 (346)
T TIGR00817 26 VLNVFPYPFIVTLISLAVGSLLKLLSGNFWSSGLKKRLKISSALLK-LLLPVAVVHTIGHVTSNVSLSKVAVSFTHTIKA 104 (346)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHH-HHCCHHEEHCCCCCHHHHHHHHHCCCCEEEEHH
T ss_conf 0233444277778878889999987264010012101240288999-873332111013310543563102021154124
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999978889989999-9999999999999999999
Q gi|254780575|r 265 TAPLLMIVSSVFILKQPIDTVRTI-VFGIVVIAMVVYLLPTVIN 307 (316)
Q Consensus 265 l~Pv~a~i~~~~~l~E~~~~~~~i-G~~lIi~gv~l~~~~~~~~ 307 (316)
+||.+.+...-++.||.++...|. ....|+.|+.-.-|.++-.
T Consensus 105 ~eP~F~v~~s~~f~g~~~p~~~w~~SL~piv~GV~ttCWsthGs 148 (346)
T TIGR00817 105 LEPFFSVVLSAFFLGQEFPLTLWLISLLPIVGGVATTCWSTHGS 148 (346)
T ss_pred HHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 45899999999874840025899999999997431010102430
No 67
>KOG2234 consensus
Probab=95.56 E-value=0.058 Score=27.63 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCCCHHH--HH-HHHHHHHHH
Q ss_conf 99999999999999999999-963898899--99-999999999
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQ-FLEQVSVLE--VI-SHRVLWSLP 65 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k-~l~~~~p~~--i~-~~R~~~a~~ 65 (316)
-.+-...-++++....-... .+.+.||.. ++ -.+.+.++.
T Consensus 91 ~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~ 134 (345)
T KOG2234 91 ETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAI 134 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999889999998610999999539953321256688999999
No 68
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.26 E-value=0.0064 Score=32.83 Aligned_cols=79 Identities=14% Similarity=-0.013 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHH
Q ss_conf 7872566788653344211579999999862586999999999-99999999999978889989999----999999999
Q gi|254780575|r 223 FLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYT-APLLMIVSSVFILKQPIDTVRTI----VFGIVVIAM 297 (316)
Q Consensus 223 ~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l-~Pv~a~i~~~~~l~E~~~~~~~i----G~~lIi~gv 297 (316)
..+...+..-+..+.+ =.+++..+.++++..+.+++.+++.- +-+-+.++|++.|||-.++.+.+ ..++|+.|+
T Consensus 53 ~~T~~~~iv~~isG~~-Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~ 131 (288)
T COG4975 53 ELTLTIFIVGFISGAF-WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGI 131 (288)
T ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHEEEEEEECCCCCCCHHHHHHCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6325567899874667-621125423210021000136665115675300066899701686145789999999998761
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780575|r 298 VVYLL 302 (316)
Q Consensus 298 ~l~~~ 302 (316)
++.++
T Consensus 132 ~lTs~ 136 (288)
T COG4975 132 YLTSK 136 (288)
T ss_pred EEEEE
T ss_conf 57541
No 69
>KOG4314 consensus
Probab=95.24 E-value=0.0097 Score=31.85 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q ss_conf 533466665334589999999769999999974202356437999999998656556623688520---57799999865
Q gi|254780575|r 104 HWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPL---LSLAIAVTWSA 180 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~ 180 (316)
.-+.|..+....+...++.+..+...++.++++...++|.......+.+.++.|+.......+... .....+...+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~ 145 (290)
T KOG4314 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAF 145 (290)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 77199999985386565799870289999999987335000114999999857679998445020256656889988899
Q ss_pred HHHHHCC---CCCCCC---CHHHHHHHHHHHHH--HHHHH-HHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3210001---123444---22578899999987--77753-10013456567-872566788653344211579999999
Q gi|254780575|r 181 YCFARKT---IPVGSS---EGFFIEMCVLAIPA--LFYVV-WNGFSGGEHFF-LGNIPDTLFLIGYGLLNSFVFCIFSYG 250 (316)
Q Consensus 181 ~~~~~~~---~~~~~~---~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~-~~~~~~~~~l~l~~~~t~i~~~~~~~a 250 (316)
....++. ...... ..........+.-. ..+.. ...+..-+.+. .....|..+...+++ +..-.++.+.+
T Consensus 146 ~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L-~lAFN~~iN~G 224 (290)
T KOG4314 146 MAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGL-SLAFNFLINFG 224 (290)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHEEEH
T ss_conf 99999999999856676113999999988999999852499998804677887740772013227789-88776511411
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86258699999999999999999999978889989999999999999999999999
Q gi|254780575|r 251 IKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVI 306 (316)
Q Consensus 251 ~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~ 306 (316)
+....|-..|+=+....+--...+.++-+-..+...+.|..+|..|-++..++.-.
T Consensus 225 iaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314 225 IALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred HHHHCHHHHEEHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCH
T ss_conf 65222055301000157651599999877778789999899999967733615406
No 70
>KOG4314 consensus
Probab=94.81 E-value=0.091 Score=26.57 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=14.0
Q ss_pred HHH-HHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999-9999999996389889999999
Q gi|254780575|r 35 ILW-GITPLYTQFLEQVSVLEVISHR 59 (316)
Q Consensus 35 ~lw-g~~~~~~k~l~~~~p~~i~~~R 59 (316)
+.| |.++.+.+.+..++|......-
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai~ 86 (290)
T KOG4314 61 IFWTGANYLYLLALKKISASDASAIF 86 (290)
T ss_pred EEEECCCCHHHHHHHHCCHHHHHHHH
T ss_conf 98725771999999853865657998
No 71
>pfam10639 UPF0546 Uncharacterized protein family UPF0546. This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.52 E-value=0.069 Score=27.22 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999769999999974202356437999999998656556
Q gi|254780575|r 122 FSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLI 160 (316)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (316)
+.......++++.++...++...+..+.++.+...|+.+
T Consensus 72 i~NslaF~fT~i~~~~lgek~~~~~t~lG~~Lv~~Gi~L 110 (112)
T pfam10639 72 IANSLAFVFTVLTGWLLGEKVLGRKTWLGMGLVVAGTAL 110 (112)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEE
T ss_conf 231799999999999963666745789999899805022
No 72
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=93.20 E-value=0.39 Score=23.12 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=42.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98625869999999999999999999997888998999999999999999999999998775562
Q gi|254780575|r 250 GIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTK 314 (316)
Q Consensus 250 a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~ 314 (316)
++.--+.-+++.+.|+.|+++.+++.++ -+.+.....+-...++.|.++-.+--.+.+||.++|
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~ 131 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAKR 131 (150)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3675348999999999999999999999-998711248999999999999999999999886424
No 73
>pfam04246 RseC_MucC Positive regulator of sigma(E), RseC/MucC. This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions). In Pseudomonas aeruginosa, de-repression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonisation in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains an ApbE domain pfam02424, w
Probab=92.42 E-value=0.43 Score=22.86 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=35.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8625869999999999999999999997888998999999999999999999999998775562
Q gi|254780575|r 251 IKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTK 314 (316)
Q Consensus 251 ~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~ 314 (316)
++.-...+++.+.|+-|+.+.+.+.+ +++.+...++.....-+.|..+.-+--.+..+|.+++
T Consensus 62 i~e~~ll~aa~l~Y~lPLl~ll~g~~-~~~~l~~~e~~~~l~~~~gl~~~~~~~r~~~~~~~~~ 124 (135)
T pfam04246 62 LPESSLLKAALLVYLLPLLGLLLGAL-LGQALGLSELLAILGGLLGLALGFLILRLLAKRLEKK 124 (135)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 53338999999999999999999999-9999631289999999999999999999998875038
No 74
>TIGR00803 nst UDP-galactose transporter; InterPro: IPR004689 Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as Caenorhabditis elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterised. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. ; GO: 0005338 nucleotide-sugar transmembrane transporter activity, 0015780 nucleotide-sugar transport, 0016021 integral to membrane.
Probab=90.58 E-value=0.83 Score=21.33 Aligned_cols=168 Identities=15% Similarity=0.032 Sum_probs=94.4
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC----------HHHHHH----HHHHHHHHHHHCCCCCCCCCH-HH
Q ss_conf 997420235643799999999865655662368852----------057799----999865321000112344422-57
Q gi|254780575|r 133 FLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIP----------LLSLAI----AVTWSAYCFARKTIPVGSSEG-FF 197 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~ 197 (316)
+..-....++..+.+|.+......++.....+.... ...... ++.......+.....++.... ..
T Consensus 41 l~~~~~l~~~lg~~~~~s~~~l~~~~~~V~~~~~~~~~~~~g~~~~~~~~~a~~~a~l~~~~~~~Yf~~~lk~~~~~Pfw 120 (235)
T TIGR00803 41 LMTLLSLVRSLGDDQWFSLKLLKLGVAIVQLVQSSAKTLMEGVLNPVVGLSAVLSALLSSGFAGVYFEKILKDKDTSPFW 120 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 99999998633368999999997667752000123344444468999999999999999986310243316777786143
Q ss_pred HHHHHHHHHHHHHH-----HHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHH
Q ss_conf 88999999877775-----310013456---5678725667886533442115799999998625869---999999999
Q gi|254780575|r 198 IEMCVLAIPALFYV-----VWNGFSGGE---HFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLS---TVGIMEYTA 266 (316)
Q Consensus 198 ~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~---~~s~~~~l~ 266 (316)
.............. .......+. ...--........+..++....+.++--..+++.+.. .-|+...+.
T Consensus 121 ~~~l~L~~f~~~~~~L~~E~~~~~~s~~~~~~~~gff~~~~~~~~~v~~l~~~~~~~~~~vv~~~dnt~al~~s~~~als 200 (235)
T TIGR00803 121 VRNLQLPLFGLFSTRLIDEFSVLLLSDGSLISNKGFFFGYTTAVWIVILLQVGGGLCVGLVVKYADNTAALTKSFVTALS 200 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 57889889999999898988766643102211100456547899999999988899888888651633478899999999
Q ss_pred HHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-99978889989999999999999999
Q gi|254780575|r 267 PLLMIVSS-VFILKQPIDTVRTIVFGIVVIAMVVY 300 (316)
Q Consensus 267 Pv~a~i~~-~~~l~E~~~~~~~iG~~lIi~gv~l~ 300 (316)
-+...+.+ +.++|-+++....+|..+++.|..++
T Consensus 201 ~~~s~l~S~~~l~d~~~~~~~~lG~~lV~~~~~lY 235 (235)
T TIGR00803 201 IILSTLASNVRLFDAKISLTFYLGAILVFLATFLY 235 (235)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999804555378999999999997439
No 75
>pfam04342 DUF486 Protein of unknown function, DUF486. This family contains several proteins of uncharacterized function.
Probab=87.31 E-value=0.89 Score=21.16 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999978889989999999999999999
Q gi|254780575|r 270 MIVSSVFILKQPIDTVRTIVFGIVVIAMVVY 300 (316)
Q Consensus 270 a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~ 300 (316)
=+.++++.++|++.++.+.|..++++|+...
T Consensus 76 F~~Fsv~yl~e~l~~n~l~af~ci~~av~Fi 106 (108)
T pfam04342 76 FVPFSVFYLRQPLRLNYLWAGLCLLGAVYFM 106 (108)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHE
T ss_conf 9999999948976589999999999878723
No 76
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=85.19 E-value=1.9 Score=19.40 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=13.8
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999978889989999999999999
Q gi|254780575|r 273 SSVFILKQPIDTVRTIVFGIVVIAM 297 (316)
Q Consensus 273 ~~~~~l~E~~~~~~~iG~~lIi~gv 297 (316)
+|..++.+-.-+-++.|..|.++-+
T Consensus 132 iG~~Lft~Y~~pFel~silLLvAmI 156 (184)
T MTH00057 132 LGRVLYTDYYYLFILASFILLVAMI 156 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999889999999999999999
No 77
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=82.38 E-value=2.5 Score=18.73 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999
Q gi|254780575|r 24 MMGTLFVFCAYILWGITPLY 43 (316)
Q Consensus 24 ~~G~~~~l~a~~lwg~~~~~ 43 (316)
..|+-..-+++++-|..++.
T Consensus 185 ~~Gvg~C~l~S~ll~~~Gi~ 204 (315)
T TIGR01478 185 TAGVGTCALSSALLGLIGIA 204 (315)
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 10368988999999888899
No 78
>PRK06638 NADH dehydrogenase subunit J; Provisional
Probab=81.55 E-value=2.7 Score=18.56 Aligned_cols=21 Identities=5% Similarity=0.102 Sum_probs=9.6
Q ss_pred HHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999978889989999999999
Q gi|254780575|r 274 SVFILKQPIDTVRTIVFGIVV 294 (316)
Q Consensus 274 ~~~~l~E~~~~~~~iG~~lIi 294 (316)
|..++++-.-+-++.|..|.+
T Consensus 134 G~~Lft~Y~lpFE~~silLLv 154 (196)
T PRK06638 134 GIVLFTDYLLPFELASVLLLV 154 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999899999999999999
No 79
>pfam05297 Herpes_LMP1 Herpesvirus latent membrane protein 1 (LMP1). This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys.
Probab=80.45 E-value=2.9 Score=18.34 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999963898899999999999999999999971000
Q gi|254780575|r 25 MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGL 78 (316)
Q Consensus 25 ~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~ 78 (316)
+..++.++|-+.|= .-+++.+.. ++.. +.+.+..-.+.++++++++||+.
T Consensus 27 lallllllAlLfW~-~IiMSd~T~--~A~~-VL~SFAvvLIIIIiII~iFrR~L 76 (382)
T pfam05297 27 LALLLLLLALLFWL-YIVMSDWTG--GALL-VLYSFALILIIIILIIFIFRRDL 76 (382)
T ss_pred HHHHHHHHHHHHHH-HHHHHHCCC--CHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999-999730244--1699-99999999999999999998753
No 80
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.34 E-value=3 Score=18.32 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999788899899999999999999999
Q gi|254780575|r 268 LLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 268 v~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
.+=+.++++.++|++.+.++.|..+|..|+.+..
T Consensus 81 ~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 81 AIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999738411889999999998898850
No 81
>TIGR01477 RIFIN variant surface antigen, rifin family; InterPro: IPR006373 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the rifin family of variant surface antigens, encoded by the rif (short for "repetetive interspersed family") genes. This is the largest variant surface antigen family in P. falciparum, with roughly 150 genes present in the genome of this parasite . The function of these proteins is not yet known, but rifins are strongly immunogenic and high levels of anti-rifin antibodies are correlated with rapid parasite clearance and asymptomatic infections . .
Probab=79.78 E-value=3.1 Score=18.22 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997888998999999999999999999999998775562
Q gi|254780575|r 257 STVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTK 314 (316)
Q Consensus 257 ~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~ 314 (316)
..++...|-.|+.+.+.++++ +|++=|+++..-+.||.+|-|+|
T Consensus 343 ~~A~~~~~~t~IiaSiiAIli--------------IVLIMvIIYLILRYRRKKKMKKK 386 (395)
T TIGR01477 343 VEATTTAYYTAIIASIIAILI--------------IVLIMVIIYLILRYRRKKKMKKK 386 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 877776677789998999999--------------99999999998754311220325
No 82
>MTH00021 ND6 NADH dehydrogenase subunit 6; Validated
Probab=79.43 E-value=3.2 Score=18.15 Aligned_cols=22 Identities=9% Similarity=-0.073 Sum_probs=10.4
Q ss_pred HHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999978889989999999999
Q gi|254780575|r 273 SSVFILKQPIDTVRTIVFGIVV 294 (316)
Q Consensus 273 ~~~~~l~E~~~~~~~iG~~lIi 294 (316)
+|..++.|-.-+-++.|.+|.+
T Consensus 133 iG~~Lyt~Y~~~FeiasiiLLv 154 (187)
T MTH00021 133 LGRILYIACYYLFILASFILLV 154 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998889999999999999
No 83
>pfam07857 DUF1632 CEO family (DUF1632). These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long. This family has been termed the CEO family for C. elegans ORF.
Probab=78.99 E-value=1.5 Score=19.94 Aligned_cols=29 Identities=7% Similarity=0.020 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999999999999999999963898899
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQFLEQVSVLE 54 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~l~~~~p~~ 54 (316)
|.++++.|++++|++++..|.-+.-|-+-
T Consensus 1 Gyi~~~va~~~fGSnfVPvKk~~tgDG~f 29 (254)
T pfam07857 1 GYVACLVSSVTFGSMFVPLKRFHSGDGFF 29 (254)
T ss_pred CHHHHHHHHHHHCCCEEEEEEEECCCCEE
T ss_conf 91579999997257026766554699654
No 84
>pfam06379 RhaT L-rhamnose-proton symport protein (RhaT). This family consists of several bacterial L-rhamnose-proton symport protein (RhaT) sequences.
Probab=78.89 E-value=3.3 Score=18.06 Aligned_cols=281 Identities=12% Similarity=0.003 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 45277999999999999999999999963898899999999999999999999971--0000112210350011233434
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFS--GGLSLLKDTLKNPKAVGMLVFS 97 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (316)
+++...|+++..++.+.=|..++..|..++.+=+..-..-.+++.+..-.+.-+.. .-....... +...+......
T Consensus 2 ~~~ii~Gi~~h~igg~~~~sfYvP~kkvk~WSWEs~W~v~gifswli~P~l~a~l~vP~~~~i~~~~--~~~~l~~~~lf 79 (344)
T pfam06379 2 NNAIILGIFWHLIGAASAACFYAPFKQVKKWSWETMWSIGGIVSWLILPWTISALLLPDFWAYYGQF--NIATLLPVFLF 79 (344)
T ss_pred CCHHHHHHHHHHHHHHHHCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC--CHHHHHHHHHH
T ss_conf 8436899999999887520120217526876386999998999999999999999748689999848--85389999999
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---
Q ss_conf 666-----8875334666653345899---99999769999999974202356437999999998656556623688---
Q gi|254780575|r 98 ATI-----LAVHWGFFIYALLTRQGFL---TSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSG--- 166 (316)
Q Consensus 98 ~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 166 (316)
+.. +..-....+.....+.... ....-...|.+.---..........+....++.+.++|+......+.
T Consensus 80 G~lWGIGgltfGlsmrYLGvSLg~~I~lGl~~~~GtLippi~~g~~~~l~~t~~g~~~l~Gv~v~LiGIai~~~AG~~ke 159 (344)
T pfam06379 80 GAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIIGTLMTPIINGNFDVLIGTEGGRMTLLGVFVALIGVAIVSRAGLLKE 159 (344)
T ss_pred HHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99981252201243114456788789999999986450478628631202487504679989999998999847754134
Q ss_pred --------CC-----HHHHHHHHHHHHHHHHH----CCC----CC---CC----CCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf --------52-----05779999986532100----011----23---44----42257889999998777753100134
Q gi|254780575|r 167 --------IP-----LLSLAIAVTWSAYCFAR----KTI----PV---GS----SEGFFIEMCVLAIPALFYVVWNGFSG 218 (316)
Q Consensus 167 --------~~-----~~~~~~~~~~~~~~~~~----~~~----~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (316)
.. ......+...+.+.... ... .. +. ...........+..-..++.......
T Consensus 160 k~~~~~~kefn~~KGl~vAv~~Gi~Sa~f~~g~~ag~pi~~~A~~~G~~~l~~~l~~~~vV~~GGf~tN~~yc~~~l~kn 239 (344)
T pfam06379 160 RAMGIKAEEFNLKKGLILAVMCGIFSAGMSFAMDAAKPMHEAAAALGIDPLYVALPSYVIIMGGGAIINLGFCFIRLAKL 239 (344)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 45164422113345089999998889999989861884789998738983565050688888649999999999999753
Q ss_pred CCCC-----CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHHHHHHHHCC------
Q ss_conf 5656-----787256---67886533442115799999998625869----99999999999999999999788------
Q gi|254780575|r 219 GEHF-----FLGNIP---DTLFLIGYGLLNSFVFCIFSYGIKRAKLS----TVGIMEYTAPLLMIVSSVFILKQ------ 280 (316)
Q Consensus 219 ~~~~-----~~~~~~---~~~~l~l~~~~t~i~~~~~~~a~~~~~a~----~~s~~~~l~Pv~a~i~~~~~l~E------ 280 (316)
.... ...... -.....++++.=...+++|..+-.+.+.. -=.+.+.+..+++-++|+. ++|
T Consensus 240 k~~s~~~~~s~~~~~~~~N~l~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~l~Mal~vi~sn~WG~~-lkEWKgas~ 318 (344)
T pfam06379 240 KNLSIKADFSLAKPLIISNILFSALAGLMWYLQFFFYAWGHAKIPAQYDYMSWMLHMSFYVLCGGIVGLL-LKEWKCAGK 318 (344)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCC
T ss_conf 6776433445444077889999999999999999999988987366775126999999999999999999-888615762
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89989999999999999999999
Q gi|254780575|r 281 PIDTVRTIVFGIVVIAMVVYLLP 303 (316)
Q Consensus 281 ~~~~~~~iG~~lIi~gv~l~~~~ 303 (316)
+.-..-++|.++++.++.++-+.
T Consensus 319 kt~~~l~~Gl~vlI~s~vVvG~G 341 (344)
T pfam06379 319 KPVAVLCIGCLVIIIAANIVGLG 341 (344)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 13589998699999999998333
No 85
>PRK10655 potE putrescine transporter; Provisional
Probab=78.87 E-value=3.3 Score=18.06 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999978889989999999999999999999999987755
Q gi|254780575|r 263 EYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 263 ~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
..+.|+++.+...++.-..--...+.|.++++.|+.++..-+.|.+.|+|
T Consensus 387 ~~ii~~l~~~~~~~~i~~~g~~~~~~~~i~~~iG~~~Y~~~~~k~~~~~~ 436 (438)
T PRK10655 387 ANFIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 05999999999999999972999999999999999999999788764236
No 86
>PRK13499 rhamnose-proton symporter; Provisional
Probab=78.58 E-value=3.4 Score=18.01 Aligned_cols=283 Identities=14% Similarity=0.012 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHCCC---CCHHHHH
Q ss_conf 4527799999999999999999999996389889999999999999999999997--1000011221035---0011233
Q gi|254780575|r 20 SLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYF--SGGLSLLKDTLKN---PKAVGML 94 (316)
Q Consensus 20 ~~~~~~G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~---~~~~~~~ 94 (316)
..+..+|+++..++.+.=|+.++..|..++.+=+..-..-.+++.+..-...-+. +.-.....+...+ +..+...
T Consensus 2 ~~~i~lGi~~h~igg~~~gsfyvp~kkvk~wsWE~~W~v~g~fswli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~lfG~ 81 (345)
T PRK13499 2 SNAIILGIIWHLIGGASAACFYAPFKKVKKWSWETMWSVGGIFSWLILPWTISALLIPDFWAYYSSFSLSTLLPVFLFGA 81 (345)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf 51479999999999986112115264278863889999989999999999999985686889986098438999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-----
Q ss_conf 4346668875334666653345899---99999769999999974202356437999999998656556623688-----
Q gi|254780575|r 95 VFSATILAVHWGFFIYALLTRQGFL---TSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSG----- 166 (316)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 166 (316)
......+..-....+.....+.... +...-...|.+.---......+.-......++.++++|+......+.
T Consensus 82 lWGiGgi~fGlsmrylGmSLg~~I~lG~~~~~GtLiP~i~~g~~~~~~~t~~g~~~l~Gv~i~liGIai~~~AG~~ke~~ 161 (345)
T PRK13499 82 MWGIGNINYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIFNGNFDVLLATEGGRMTLLGVLVALIGVAIVGRAGMLKERK 161 (345)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 97245202420342432578878999999998752127752604305577874255477999998898530763122333
Q ss_pred -------CCHH--HHHHH---HHHHHHHHH----HCCC----C---CC----CCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -------5205--77999---998653210----0011----2---34----4422578899999987777531001345
Q gi|254780575|r 167 -------IPLL--SLAIA---VTWSAYCFA----RKTI----P---VG----SSEGFFIEMCVLAIPALFYVVWNGFSGG 219 (316)
Q Consensus 167 -------~~~~--~~~~~---~~~~~~~~~----~~~~----~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (316)
.... ....+ ...+.+... .... . .+ ..+.........+..-..++........
T Consensus 162 ~~~~~~~efn~~kGl~iAv~sGilSa~f~fg~~ag~pi~~~A~~~G~~~l~a~lp~~~vi~~GG~~~N~~yc~~ll~kNk 241 (345)
T PRK13499 162 MGIKAEKEFNLKKGLLLAVMCGIFSAGFSFAMNAGKPMHEAALALGVDPLYVALPVYVIIMGGGAIINLGYCFIRLAKVK 241 (345)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 03332234476766899999888899999998708867999988399767772528999986189999999999997157
Q ss_pred CCCC-----CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHCCC------
Q ss_conf 6567-----8725---66788653344211579999999862586----9999999999999999999997888------
Q gi|254780575|r 220 EHFF-----LGNI---PDTLFLIGYGLLNSFVFCIFSYGIKRAKL----STVGIMEYTAPLLMIVSSVFILKQP------ 281 (316)
Q Consensus 220 ~~~~-----~~~~---~~~~~l~l~~~~t~i~~~~~~~a~~~~~a----~~~s~~~~l~Pv~a~i~~~~~l~E~------ 281 (316)
...+ .+.. .-.....++.+.=...+++|-.+-.+.+. .-=.+.+.+..+++-++|. .++|-
T Consensus 242 t~~~~~~~s~~~~~~~~n~~~~aLaGv~Wy~qfffYg~G~s~mg~~~~~vsW~l~Ms~~vi~sn~WGl-~lkEWkgas~k 320 (345)
T PRK13499 242 NLSIKADFSLARPLIITNLLLSALAGVMWYLQFFFYAMGHAKIPAQYDYVSWMLHMSFYVLCGGLVGL-VLKEWKGASRR 320 (345)
T ss_pred CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHH
T ss_conf 51443035774156777699999999999999999998998706666620599999999999999998-75021699603
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999999999999999
Q gi|254780575|r 282 IDTVRTIVFGIVVIAMVVYLLP 303 (316)
Q Consensus 282 ~~~~~~iG~~lIi~gv~l~~~~ 303 (316)
.--.-++|.++++.+..++.+.
T Consensus 321 ~~r~l~~Gl~vlIls~vvvG~g 342 (345)
T PRK13499 321 PVTVLSLGLVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1899999699999999998503
No 87
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=77.31 E-value=3.7 Score=17.80 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=22.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHH
Q ss_conf 6258699999999999999999999978889--989999999
Q gi|254780575|r 252 KRAKLSTVGIMEYTAPLLMIVSSVFILKQPI--DTVRTIVFG 291 (316)
Q Consensus 252 ~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~--~~~~~iG~~ 291 (316)
..-.-.+++.+.|+.|+++.+.+..+.+.-+ +...++|++
T Consensus 70 ~E~~lL~sa~lvYllPLl~l~~ga~l~~~l~~sel~~il~a~ 111 (158)
T PRK10862 70 AEGSLLRSALLVYMSPLVGLFLGAALFQLLFGSDLAALCGAV 111 (158)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 606899999999999999999999999997015399999999
No 88
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=73.46 E-value=4.7 Score=17.22 Aligned_cols=32 Identities=6% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89989999999999999999999999987755
Q gi|254780575|r 281 PIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 281 ~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
.+|..|++...++++|+++......|+++.+|
T Consensus 233 ~lt~~Q~lSl~~i~~G~~ll~~~~rr~~k~~~ 264 (269)
T PRK12437 233 NLRMAQVMSILGIIIGLVLLIYIRRRGLKTTR 264 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 81199999999999999999999862655423
No 89
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=72.27 E-value=5 Score=17.07 Aligned_cols=43 Identities=2% Similarity=0.021 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 6788653344211579999999862586999999999999999
Q gi|254780575|r 229 DTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEYTAPLLMI 271 (316)
Q Consensus 229 ~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~ 271 (316)
+...+...+.+-..++...-+-+|.+.-..-.++..-.-+++.
T Consensus 222 ~~~~lig~i~sfi~~~~si~~ll~~l~~~~~~~F~~Yri~lG~ 264 (277)
T PRK12554 222 LIPYALAFIAAFIAAYLSVRWFMRFMAKGSLAYFAWYCIILGV 264 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
T ss_conf 9999999999999999999999999987898127999999999
No 90
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=64.85 E-value=7.3 Score=16.19 Aligned_cols=36 Identities=11% Similarity=-0.197 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 567872566788653344211579999999862586
Q gi|254780575|r 221 HFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKL 256 (316)
Q Consensus 221 ~~~~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a 256 (316)
....+++........-.+....+-++..+.++|.+.
T Consensus 241 ~~gVsp~~fg~lf~~~~~a~i~g~f~~gr~~~k~~~ 276 (400)
T TIGR00710 241 IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKIGA 276 (400)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 014656778999999999999999999866654310
No 91
>PTZ00042 stevor; Provisional
Probab=63.88 E-value=7.6 Score=16.08 Aligned_cols=43 Identities=7% Similarity=0.126 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999978889989999999999999999999999987755
Q gi|254780575|r 264 YTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 264 ~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
+..|+.+...+. +.|..+...+|++.+|++..+.-|..+||++
T Consensus 250 ~ag~aa~~A~~~------F~P~GIaalVLlilaVvLIILYIWLyrRRKn 292 (304)
T PTZ00042 250 LAGTAATAAMAA------FYPCGIAALVLLILAVVLIILYIWLYRRRKN 292 (304)
T ss_pred CHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 000788888864------1162999999999999999999999984124
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.04 E-value=8.2 Score=15.89 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=11.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 023564379999999986565
Q gi|254780575|r 138 FLKERLNHLQIIAALLIILSL 158 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~ 158 (316)
..+++++..+..++.+...|+
T Consensus 121 ~~~~~~~~~r~lgi~L~l~gi 141 (150)
T COG3238 121 VPKRPLNLPRILGILLVLAGI 141 (150)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 875789789999999999999
No 93
>pfam02694 UPF0060 Uncharacterized BCR, YnfA/UPF0060 family.
Probab=61.93 E-value=8.3 Score=15.88 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999974202356437999999998656556623
Q gi|254780575|r 127 TPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTL 163 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 163 (316)
.......+.+...+.|+++..+++..+++.|+..+..
T Consensus 67 yI~~Sl~W~w~vdg~~pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T pfam02694 67 FVCLALMWGWVVDGVKPDLYDWIGALIALCGVLVIMY 103 (107)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEE
T ss_conf 9999999999974878967789859999983898411
No 94
>KOG4831 consensus
Probab=61.78 E-value=4 Score=17.58 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999974202356437999999998656556
Q gi|254780575|r 127 TPVISVFLGSVFLKERLNHLQIIAALLIILSLLI 160 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (316)
...++...+.....|...+....+..+..+|..+
T Consensus 89 tfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831 89 TFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH
T ss_conf 7999987788854215665211000077641343
No 95
>PRK02237 hypothetical protein; Provisional
Probab=60.79 E-value=8.7 Score=15.77 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999974202356437999999998656556623
Q gi|254780575|r 127 TPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTL 163 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 163 (316)
.......+.+...+.|+++..+++..++..|+..+..
T Consensus 68 yI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iIl~ 104 (108)
T PRK02237 68 YIAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMF 104 (108)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEE
T ss_conf 9999999999974889975589869999973887322
No 96
>pfam00873 ACR_tran AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Probab=59.15 E-value=9.3 Score=15.60 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986258699999999999--9999999999788899899999999999999999
Q gi|254780575|r 245 CIFSYGIKRAKLSTVGIMEYTAP--LLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 245 ~~~~~a~~~~~a~~~s~~~~l~P--v~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
.....+...-+-...-++...-| +.++++|.++.|.+++...++|.+. +.|+++.+
T Consensus 875 IyliL~~~F~S~~~pliIl~~IP~a~iG~~lgl~~~g~~~~~~s~iG~i~-L~GIvVnn 932 (1021)
T pfam00873 875 VFLVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLIT-LIGLAVKN 932 (1021)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHC
T ss_conf 99999999807999999999999999999999999878813999999999-99999947
No 97
>pfam03203 MerC MerC mercury resistance protein.
Probab=52.79 E-value=12 Score=15.01 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 872566788653344211579999999862586
Q gi|254780575|r 224 LGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKL 256 (316)
Q Consensus 224 ~~~~~~~~~l~l~~~~t~i~~~~~~~a~~~~~a 256 (316)
.++..+..+++.....+.++ ...+.|+-+.
T Consensus 35 ~~e~~h~~ll~~~ipis~~a---l~~G~~~H~~ 64 (115)
T pfam03203 35 LDELFHRWLLVLALPIALLA---LGLGWRRHRQ 64 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHH---HHHHHHHCCC
T ss_conf 32099999999999999999---9999876487
No 98
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=49.79 E-value=13 Score=14.74 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=37.5
Q ss_pred HHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999986258699999999999--9999999999788899899999999999999999
Q gi|254780575|r 247 FSYGIKRAKLSTVGIMEYTAP--LLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 247 ~~~a~~~~~a~~~s~~~~l~P--v~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
...+...-+-...-++....| +.++++|.++.|.+++...++|.+.. .|+++.+
T Consensus 865 llL~~~F~S~~~pliIl~~iPla~iG~~~gl~l~~~~ls~~s~iG~i~L-~Givvnn 920 (1025)
T PRK10614 865 IVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLL-IGIVKKN 920 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHC
T ss_conf 9999998339999999999999999999999998788569999999999-9999957
No 99
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=46.64 E-value=15 Score=14.46 Aligned_cols=51 Identities=12% Similarity=-0.037 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999997----8889989999999999999999999999987755
Q gi|254780575|r 262 MEYTAPLLMIVSSVFIL----KQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 262 ~~~l~Pv~a~i~~~~~l----~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
...+.|+++...+.++. .+.+-...+.+...+..|+.++.....|+++.||
T Consensus 389 ~~p~~~~l~~~~~~~l~~~~~~~~p~~~~i~~~~~~~~Gl~~Y~~~~rr~~~~~~ 443 (445)
T PRK11357 389 AFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQLNA 443 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEECHHHHCC
T ss_conf 8037999999999999999998264999999999999998999863101786635
No 100
>PRK09579 multidrug efflux protein; Reviewed
Probab=45.41 E-value=16 Score=14.35 Aligned_cols=56 Identities=7% Similarity=0.113 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986258699999999999--9999999999788899899999999999999999
Q gi|254780575|r 245 CIFSYGIKRAKLSTVGIMEYTAP--LLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 245 ~~~~~a~~~~~a~~~s~~~~l~P--v~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
.+...+...-+-...-++....| +.++++|.++.|.+++...++|.+. +.|+++.+
T Consensus 857 i~liL~~~F~S~~~pliIl~~iPla~iG~~lgl~l~g~~l~~~s~iG~i~-L~GIvvnn 914 (1017)
T PRK09579 857 IFLVLAAQFESFRDPLVILVTVPLSICGALVPLFLGVSSMNIYTQVGLVT-LIGLISKH 914 (1017)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHH
T ss_conf 99999999808999999999999999999999999768836999999999-99999963
No 101
>PRK10209 acid-resistance membrane protein; Provisional
Probab=44.15 E-value=17 Score=14.24 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=13.6
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0014744014527799999999999999
Q gi|254780575|r 11 SKGLSKENASLPTMMGTLFVFCAYILWG 38 (316)
Q Consensus 11 ~~~~~~~~~~~~~~~G~~~~l~a~~lwg 38 (316)
+|++-|++-+.-...|+++.+...++..
T Consensus 13 ~~~~lkk~~~~~~i~gvLl~l~Gi~ai~ 40 (190)
T PRK10209 13 DEEMLKKQRRAIQIIAVLLFIVGLLCLS 40 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999997179999999999999999999
No 102
>PRK09577 multidrug efflux protein; Reviewed
Probab=42.41 E-value=18 Score=14.08 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=35.6
Q ss_pred HHHHCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 986258699999999999--9999999999788899899999999999999999
Q gi|254780575|r 250 GIKRAKLSTVGIMEYTAP--LLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 250 a~~~~~a~~~s~~~~l~P--v~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
+...-+-...-++....| ..+++++.++.|.+++...++|.+ .++|+++.+
T Consensus 883 ~~~F~S~~~pliIl~~IPla~iG~~~~l~l~g~~ls~~s~iG~i-~L~GIvVnn 935 (1032)
T PRK09577 883 AALYESWSIPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAKN 935 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHC
T ss_conf 99985189999999999999999999999977880299999999-999999947
No 103
>pfam02009 Rifin_STEVOR Rifin/stevor family. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens.
Probab=40.95 E-value=19 Score=13.96 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999999999999999999997888998999999999999999999999998775562
Q gi|254780575|r 256 LSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTK 314 (316)
Q Consensus 256 a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~ 314 (316)
........+.+|+.+.+.++++ ++++=++++...+.|+.+|.++|
T Consensus 236 ~i~~~~t~~~~~i~~SiiAIvi--------------IVLVMvIIYLILRYRRKKKMkKK 280 (289)
T pfam02009 236 TIITKATALFEPIYASAIAILI--------------IVLVMLIIYLILRYRRKKKMKKK 280 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999--------------99999999999987321250899
No 104
>PRK04201 zinc transporter ZupT; Provisional
Probab=39.20 E-value=20 Score=13.80 Aligned_cols=72 Identities=15% Similarity=0.049 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHH
Q ss_conf 57999999986258699999999999999999999978889989999999999-999-99999999998775562
Q gi|254780575|r 242 FVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVV-IAM-VVYLLPTVINSGKNKTK 314 (316)
Q Consensus 242 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi-~gv-~l~~~~~~~~~~k~~~~ 314 (316)
.+--++..+.++..+-..+.++-+..+.+.++++.+.++-.+..- .|..+-. +|. +-+..++..++.+++++
T Consensus 167 va~~l~~~g~s~~~a~~~~~lsgl~epiGa~ig~~~~~~~~~~~~-~~~~la~aAG~MiyV~~~eliPea~~~~~ 240 (263)
T PRK04201 167 VAVPIYYATGSKKKAFLYSFLSGLAEPLGAVLGYLILGPFLSPVV-LGAIFAAVAGIMVFISLDELLPAAKEYGP 240 (263)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999955779999999999998789999999999998501789-99999999999899999976477770698
No 105
>pfam02673 BacA Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol.
Probab=37.86 E-value=21 Score=13.68 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999997100
Q gi|254780575|r 66 GVFFAIVYFSGG 77 (316)
Q Consensus 66 ~l~~~~~~~~~~ 77 (316)
.++.++.++|++
T Consensus 48 tllAv~~~f~~~ 59 (255)
T pfam02673 48 TILAVLVYFRKD 59 (255)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 106
>pfam07444 Ycf66_N Ycf66 protein N-terminus. This family represents the N-terminus (approximately 80 residues) of Ycf66, a protein that seems to be restricted to eukaryotes that contain chloroplasts and to cyanobacteria.
Probab=37.21 E-value=21 Score=13.62 Aligned_cols=10 Identities=10% Similarity=0.617 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q ss_conf 7999999999
Q gi|254780575|r 24 MMGTLFVFCA 33 (316)
Q Consensus 24 ~~G~~~~l~a 33 (316)
.+|+..++.+
T Consensus 10 ilgi~l~~~~ 19 (84)
T pfam07444 10 LLGIILAIAG 19 (84)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 107
>KOG1631 consensus
Probab=31.32 E-value=27 Score=13.08 Aligned_cols=33 Identities=0% Similarity=-0.047 Sum_probs=12.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888998999999999999999999999998775
Q gi|254780575|r 279 KQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKN 311 (316)
Q Consensus 279 ~E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~ 311 (316)
||+.=...+.-++.++..+...+.-..+.+|++
T Consensus 182 GETvFL~~lligl~llllv~~~q~L~~~sKk~~ 214 (261)
T KOG1631 182 GETVFLYILLIGLSLLLLVLSQQFLSKLSKKTK 214 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 502299999999999999999999988642246
No 108
>PRK05760 F0F1 ATP synthase subunit I; Validated
Probab=30.74 E-value=28 Score=13.02 Aligned_cols=67 Identities=7% Similarity=0.055 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHH----HHHHHHHH----HHHHHHHHHHH-CCCCCHHHHHHHHHHHH
Q ss_conf 67886533442115799999-99862586999----99999999----99999999997-88899899999999999
Q gi|254780575|r 229 DTLFLIGYGLLNSFVFCIFS-YGIKRAKLSTV----GIMEYTAP----LLMIVSSVFIL-KQPIDTVRTIVFGIVVI 295 (316)
Q Consensus 229 ~~~~l~l~~~~t~i~~~~~~-~a~~~~~a~~~----s~~~~l~P----v~a~i~~~~~l-~E~~~~~~~iG~~lIi~ 295 (316)
+..-..+|+....++...+. ++.|+-++..+ ..+.--|- +.+++++..+. -+++++..+..+-++..
T Consensus 33 ~a~Sal~GGli~~iPn~~Fa~~aFr~~GAr~a~~vv~sfy~GEa~Kl~lT~vlFalvf~~~~~l~~~~lf~~f~l~l 109 (124)
T PRK05760 33 WGYSALIGGLIAVLANAYFAHKAFRFSGARAAKAIVRSFYAGEAGKIIITAVLFALAFAGVKPLVPLKLFGTYLLVL 109 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999982699999489999999987503148999999998879999999999999998725454999999999999
No 109
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ; InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptococcus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation..
Probab=26.78 E-value=33 Score=12.63 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27799999999999999999999-9963-898899999999999999999999
Q gi|254780575|r 22 PTMMGTLFVFCAYILWGITPLYT-QFLE-QVSVLEVISHRVLWSLPGVFFAIV 72 (316)
Q Consensus 22 ~~~~G~~~~l~a~~lwg~~~~~~-k~l~-~~~p~~i~~~R~~~a~~~l~~~~~ 72 (316)
.-++|.-..+.+.++||.--+.. +.-. -++|.|+. +-+.++...+-+.=.
T Consensus 45 sfrrG~~~G~~~GLi~GlL~~i~G~ay~~~l~~~Q~~-ldY~laF~~~GlAG~ 96 (187)
T TIGR02357 45 SFRRGLKAGLVAGLIWGLLKIILGKAYKNILHPVQVL-LDYILAFAALGLAGV 96 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 9975258998998999999999656512400088999-998788899989988
No 110
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=26.50 E-value=33 Score=12.60 Aligned_cols=51 Identities=10% Similarity=-0.018 Sum_probs=35.6
Q ss_pred HHHHCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 986258699999999999--9999999999788899899999999999999999
Q gi|254780575|r 250 GIKRAKLSTVGIMEYTAP--LLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 250 a~~~~~a~~~s~~~~l~P--v~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
+...-+-...-++....| +.+++++.++.|.+++...++|.+. +.|+++.+
T Consensus 887 ~~~F~S~~~pliIl~~IPl~~iG~~l~l~l~g~~l~~~s~iG~i~-L~GIvVnn 939 (1037)
T PRK10555 887 AALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLT-VIGLSAKN 939 (1037)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHC
T ss_conf 999851999999999999999999999999868825999999999-99999838
No 111
>COG0597 LspA Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=26.32 E-value=33 Score=12.58 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 37999999998656556
Q gi|254780575|r 144 NHLQIIAALLIILSLLI 160 (316)
Q Consensus 144 ~~~~~~~~~~~~~g~~~ 160 (316)
.......+..+.+|-..
T Consensus 97 ~~i~~~lIigGAlGN~i 113 (167)
T COG0597 97 YAIALALIIGGALGNLI 113 (167)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999987777799
No 112
>PRK10490 sensor protein KdpD; Provisional
Probab=21.71 E-value=41 Score=12.07 Aligned_cols=11 Identities=9% Similarity=0.301 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 77999999999
Q gi|254780575|r 23 TMMGTLFVFCA 33 (316)
Q Consensus 23 ~~~G~~~~l~a 33 (316)
...+.+.++..
T Consensus 398 ~~~~~~~al~l 408 (895)
T PRK10490 398 QIQGCVVAIAL 408 (895)
T ss_pred HHHHHHHHHHH
T ss_conf 08999999999
No 113
>PRK10133 L-fucose transporter; Provisional
Probab=21.65 E-value=41 Score=12.06 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=75.8
Q ss_pred CCCCCCHHHHHCCCCCCCCCCHHHH-HHHHHHHHHHHHHHH----HHHHH---HHCCCCHHHHHHHH--HHHHHHHHHHH
Q ss_conf 9775471442001474401452779-999999999999999----99999---96389889999999--99999999999
Q gi|254780575|r 1 MGKGATKKEYSKGLSKENASLPTMM-GTLFVFCAYILWGIT----PLYTQ---FLEQVSVLEVISHR--VLWSLPGVFFA 70 (316)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~l~a~~lwg~~----~~~~k---~l~~~~p~~i~~~R--~~~a~~~l~~~ 70 (316)
||.-+...|.-+..++++.|+|+-. -+.++..--++||+. ++..+ ..-+.+..+-...- +..+-.++-+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~k~~~~p~~lv~~LFF~wGf~t~l~~~Li~~fk~~f~Ls~~qa~lv~~aff~aY~v~siP 80 (438)
T PRK10133 1 MGNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIP 80 (438)
T ss_pred CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98734664530101355544510388999999999999999876778999999990968999989999999999999988
Q ss_pred HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999710000112210350011233434666887------53346666533458999999976999999997420235643
Q gi|254780575|r 71 IVYFSGGLSLLKDTLKNPKAVGMLVFSATILAV------HWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLN 144 (316)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (316)
.-..-+|...+ +...........+..++. .+..+..+.-......+......+|.+..+........|++
T Consensus 81 ag~li~r~GyK----~~ii~GL~l~a~G~llF~paa~~~sy~~fL~alFvig~Gla~LQtaaNPyi~~lG~~e~a~~RLn 156 (438)
T PRK10133 81 AGILMKKLSYK----AGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLN 156 (438)
T ss_pred HHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999997539----99999999999999999999887269999999999997199999808899999789523999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 799999999865655
Q gi|254780575|r 145 HLQIIAALLIILSLL 159 (316)
Q Consensus 145 ~~~~~~~~~~~~g~~ 159 (316)
..+..-.+..+++..
T Consensus 157 laq~fN~lGt~i~pl 171 (438)
T PRK10133 157 LAQTFNSFGAIIAVV 171 (438)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999978789999999
No 114
>TIGR00883 2A0106 MFS transporter, metabolite:H+ symporter (MHS) family protein; InterPro: IPR004736 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognized and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated . The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified . Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognized MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found . Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 prove to be a characteristic of virtually all of the more than 300 MFS proteins identified. This entry represents the metabolite-H(+) symport (MHS) subfamily of the MFS. Members include citrate-proton symporters , alpha-ketoglutarate permease , shikimate transporters , and the proline/betaine transporter ProP .; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=21.44 E-value=42 Score=12.04 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=17.5
Q ss_pred HHCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 96389889999999--9999999999999971000011
Q gi|254780575|r 46 FLEQVSVLEVISHR--VLWSLPGVFFAIVYFSGGLSLL 81 (316)
Q Consensus 46 ~l~~~~p~~i~~~R--~~~a~~~l~~~~~~~~~~~~~~ 81 (316)
.++|-.|+.-=.|| |++++ .+...-++.|++.++.
T Consensus 158 ~~~~~~P~~~WGWRiPFl~s~-~l~~~gL~lR~~L~Et 194 (413)
T TIGR00883 158 LLGDEAPLLEWGWRIPFLVSA-VLVLIGLYLRRNLEET 194 (413)
T ss_pred HHCCCCCHHHCCCHHHHHHHH-HHHHHHHHHHCCCCCC
T ss_conf 726652033103145899999-9999999981656457
No 115
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.18 E-value=42 Score=12.01 Aligned_cols=48 Identities=13% Similarity=-0.033 Sum_probs=34.3
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 625869999999999999999999997888998999999999999999
Q gi|254780575|r 252 KRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVV 299 (316)
Q Consensus 252 ~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l 299 (316)
|--.+++++.+...-..++.++-+-..++.++...++..+++..-.=+
T Consensus 42 RlHA~tka~TlG~g~iL~as~l~f~~~~~~~~~~elLi~~Fl~iTaPV 89 (120)
T PRK12671 42 RLHAPTLGTSWGAGGILIASILYFSILQSRPVLHEVLIGVFVVVTTPV 89 (120)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 800005768899999999999999983244289999999999995799
No 116
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=20.56 E-value=44 Score=11.94 Aligned_cols=29 Identities=10% Similarity=0.081 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHCCCC---CHHHHHHHH
Q ss_conf 99999999999999978889---989999999
Q gi|254780575|r 263 EYTAPLLMIVSSVFILKQPI---DTVRTIVFG 291 (316)
Q Consensus 263 ~~l~Pv~a~i~~~~~l~E~~---~~~~~iG~~ 291 (316)
+.+.-+++++.=+++-||.+ +...++|.+
T Consensus 678 Ts~Ttll~v~~L~ifGg~~i~~Fa~alliGii 709 (741)
T PRK13024 678 TSLTTLLVVLALLIFGGSSIRNFSLALLVGLI 709 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999722679999999999999
Done!