Query gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 316
No_of_seqs 200 out of 5855
Neff 10.4
Searched_HMMs 33803
Date Wed Jun 1 16:04:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780575.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2i68_A Protein EMRE; transmem 99.4 8.7E-13 2.6E-17 86.3 5.8 88 228-315 28-116 (137)
2 >3b5d_A Multidrug transporter 98.0 2.3E-05 6.8E-10 45.8 6.9 70 235-304 35-105 (110)
3 >2i68_A Protein EMRE; transmem 96.7 0.0072 2.1E-07 32.2 7.0 71 96-166 35-106 (137)
4 >3l1l_A Arginine/agmatine anti 61.0 7.4 0.00022 15.8 7.4 32 26-57 15-46 (445)
5 >2jo1_A Phospholemman; FXYD1, 33.5 21 0.00063 13.3 3.6 24 289-312 24-47 (72)
6 >3hun_A Penicillin-binding pro 32.8 11 0.00032 14.9 0.0 12 287-298 91-102 (117)
7 >2jp3_A FXYD domain-containing 25.1 30 0.0009 12.4 2.6 17 290-306 26-42 (67)
8 >2b2h_A AMT-1, ammonium transp 19.0 41 0.0012 11.7 13.2 231 26-256 126-368 (369)
9 >2jwa_A Receptor tyrosine-prot 15.3 51 0.0015 11.2 3.3 30 284-315 15-44 (44)
10 >2zxe_G FXYD10, phospholemman- 13.0 59 0.0018 10.9 0.8 29 287-315 25-53 (74)
No 1
>>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} (A:)
Probab=99.36 E-value=8.7e-13 Score=86.27 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66788653344211579999999862586999-99999999999999999978889989999999999999999999999
Q gi|254780575|r 228 PDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTV-GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVI 306 (316)
Q Consensus 228 ~~~~~l~l~~~~t~i~~~~~~~a~~~~~a~~~-s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~~ 306 (316)
..+..+...+++..+.+.++.+++++.+.+.+ +++..++|++++++|+++|||++++.+++|.++|++|++++++.+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~~~v~~~i~a~~~l~E~lt~~~~lG~~lii~Gv~li~~~~~~ 107 (137)
T 2i68_A 28 TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRS 107 (137)
T ss_dssp ------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCC
T ss_conf 63889999999999999999999965884239999998999999999999937989899999999999999930015788
Q ss_pred HHHHHHHHC
Q ss_conf 987755621
Q gi|254780575|r 307 NSGKNKTKK 315 (316)
Q Consensus 307 ~~~k~~~~k 315 (316)
+.++++.++
T Consensus 108 ~~~~~~~~~ 116 (137)
T 2i68_A 108 TPHEFEAYV 116 (137)
T ss_dssp ---------
T ss_pred CCCCCHHHH
T ss_conf 888765555
No 2
>>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* (A:)
Probab=97.99 E-value=2.3e-05 Score=45.83 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 334421157999999986258699-9999999999999999999788899899999999999999999999
Q gi|254780575|r 235 GYGLLNSFVFCIFSYGIKRAKLST-VGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPT 304 (316)
Q Consensus 235 l~~~~t~i~~~~~~~a~~~~~a~~-~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~ 304 (316)
.....-.+++++...++|++|.+. .++..-+.-+.+++.|++++||++++.+++|..+|+.|++..++.+
T Consensus 35 ~~~~~~~~sf~~ls~alk~ip~gvAYAvW~GiG~~~~~~~g~~~f~e~~s~~~~~gi~lIi~Gvv~l~l~s 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 99999999999999999457741489989988999999999999379897999999999999998310147
No 3
>>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} (A:)
Probab=96.69 E-value=0.0072 Score=32.21 Aligned_cols=71 Identities=21% Similarity=0.143 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3466688753346666533458999999-9769999999974202356437999999998656556623688
Q gi|254780575|r 96 FSATILAVHWGFFIYALLTRQGFLTSFS-YFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSG 166 (316)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 166 (316)
..+......+..+..+....+...+..+ ....|+++.++++.+++|+++..+++++.+.+.|+......+.
T Consensus 35 ~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~~~v~~~i~a~~~l~E~lt~~~~lG~~lii~Gv~li~~~~~ 106 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCC
T ss_conf 999999999999999996588423999999899999999999993798989999999999999993001578
No 4
>>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3hqk_A (A:)
Probab=60.95 E-value=7.4 Score=15.78 Aligned_cols=32 Identities=19% Similarity=-0.042 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999999999999999999963898899999
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQFLEQVSVLEVIS 57 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k~l~~~~p~~i~~ 57 (316)
...+.+.+.+-+|........+.+.++..+.+
T Consensus 15 ~~~l~~~~~ig~g~f~~~g~~~~~~~~~~l~~ 46 (445)
T 3l1l_A 15 VTLMVSGAIMGSGVFLLPANLASTGGIAIYGW 46 (445)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999
No 5
>>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens} (A:)
Probab=33.47 E-value=21 Score=13.28 Aligned_cols=24 Identities=4% Similarity=0.009 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999987755
Q gi|254780575|r 289 VFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 289 G~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
+++|-+.|+++....+.+-..++|
T Consensus 24 A~vLfi~GI~iilS~kcrC~~~qk 47 (72)
T 2jo1_A 24 AGILFILGILIVLSRRCRCKFNQQ 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999999836565677777
No 6
>>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* (A:337-453)
Probab=32.78 E-value=11 Score=14.93 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780575|r 287 TIVFGIVVIAMV 298 (316)
Q Consensus 287 ~iG~~lIi~gv~ 298 (316)
++|.++++++++
T Consensus 91 ~v~l~ll~i~~i 102 (117)
T 3hun_A 91 IIGGTCLVAGLA 102 (117)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 7
>>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus} (A:)
Probab=25.06 E-value=30 Score=12.44 Aligned_cols=17 Identities=6% Similarity=-0.066 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780575|r 290 FGIVVIAMVVYLLPTVI 306 (316)
Q Consensus 290 ~~lIi~gv~l~~~~~~~ 306 (316)
++|-+.|+++....+.|
T Consensus 26 ~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 26 GLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99999999999847533
No 8
>>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A (A:1-369)
Probab=19.05 E-value=41 Score=11.75 Aligned_cols=231 Identities=10% Similarity=-0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999-96389889999999999999999999997100001122103500112334346668875
Q gi|254780575|r 26 GTLFVFCAYILWGITPLYTQ-FLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVH 104 (316)
Q Consensus 26 G~~~~l~a~~lwg~~~~~~k-~l~~~~p~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (316)
+..+...+.-.|+..+...- ..+-.+...+-..-...+......+-...+|..+..+........+....+-.....++
T Consensus 126 ~~vy~~~~~wvw~~g~l~~lg~~DfaG~~vVH~~aG~~gL~~a~~lg~r~~~~~~~~~~~~~~~~~lG~~lLw~gW~gFN 205 (369)
T 2b2h_A 126 TFVYAPFAHWLWGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFN 205 (369)
T ss_dssp HHTHHHHHHHHHSSCHHHHTTCCCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 98876651121588752567753446651210020488999999852200023445665786067888999999988633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--
Q ss_conf 334666653345899999997699999999742023564379999999986565566236885205779999986532--
Q gi|254780575|r 105 WGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYC-- 182 (316)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (316)
................+.......-..........+.|.+.....-..++..-......+.-........+.......
T Consensus 206 ~gs~~~~~~~~~~~~~tt~~aa~~~~~~~~~~~~~~gK~~~~~~~ng~LaGlVait~~~~~v~p~~a~iiG~iag~i~~~ 285 (369)
T 2b2h_A 206 GGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYL 285 (369)
T ss_dssp HGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 44302203421013322102577788875200023666768887655554445020241246757999999988765677
Q ss_pred --HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --100011234442257889999998777753100134565678725-------66788653344211579999999862
Q gi|254780575|r 183 --FARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNI-------PDTLFLIGYGLLNSFVFCIFSYGIKR 253 (316)
Q Consensus 183 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~l~~~~t~i~~~~~~~a~~~ 253 (316)
-..++.+.++................................... .....+......+.+.-+...+.+|+
T Consensus 286 ~~~~~~~~~idD~~~v~~vHg~~G~~G~i~~g~f~~~~~~~~g~~~~~~~~~lg~Ql~g~~v~~~~~~~~~~i~~~il~~ 365 (369)
T 2b2h_A 286 AMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQLLVSQLIAVASTTAYAFLVTLILAKAVDA 365 (369)
T ss_dssp HHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88887753356533444304432145424530004654467664024778999999999998655899999999999985
Q ss_pred CCH
Q ss_conf 586
Q gi|254780575|r 254 AKL 256 (316)
Q Consensus 254 ~~a 256 (316)
...
T Consensus 366 ~~g 368 (369)
T 2b2h_A 366 AVG 368 (369)
T ss_dssp HTC
T ss_pred CCC
T ss_conf 850
No 9
>>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} (A:)
Probab=15.28 E-value=51 Score=11.23 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999999999999999987755621
Q gi|254780575|r 284 TVRTIVFGIVVIAMVVYLLPTVINSGKNKTKK 315 (316)
Q Consensus 284 ~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~k 315 (316)
....+|..+.+ ++-....-..++||+|-||
T Consensus 15 ia~vvgill~~--v~g~v~gilikrrrqkirk 44 (44)
T 2jwa_A 15 ISAVVGILLVV--VLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999--9999999997988887039
No 10
>>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* (G:)
Probab=12.97 E-value=59 Score=10.86 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999987755621
Q gi|254780575|r 287 TIVFGIVVIAMVVYLLPTVINSGKNKTKK 315 (316)
Q Consensus 287 ~iG~~lIi~gv~l~~~~~~~~~~k~~~~k 315 (316)
+.+++|-+.|+++....+.|-...+|++.
T Consensus 25 i~A~vLfi~GI~iilS~kcrC~~nqk~r~ 53 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCRCKFNQNKRT 53 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-----------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999999999999938634567777889
Done!