Query gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 316
No_of_seqs 200 out of 5855
Neff 10.4
Searched_HMMs 23785
Date Tue May 31 21:29:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780575.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 1E-07 4.3E-12 57.8 6.2 72 234-305 34-106 (137)
2 3b5d_A Multidrug transporter E 98.0 2E-05 8.4E-10 45.3 7.5 70 235-304 35-105 (110)
3 3l1l_A Arginine/agmatine antip 26.1 20 0.00086 12.6 7.4 22 14-35 1-23 (445)
4 2v50_A Multidrug resistance pr 25.8 21 0.00087 12.5 11.5 60 241-301 881-940 (1052)
5 3hun_A Penicillin-binding prot 25.7 12 0.0005 13.9 0.0 30 283-312 423-452 (453)
6 2j8s_A ACRB, acriflavine resis 23.7 23 0.00096 12.3 10.2 32 268-300 909-940 (1055)
7 2jp3_A FXYD domain-containing 23.6 23 0.00096 12.3 2.6 11 291-301 27-37 (67)
8 2b2h_A AMT-1, ammonium transpo 13.9 39 0.0016 11.0 10.7 51 251-301 293-356 (399)
9 2jwa_A Receptor tyrosine-prote 12.9 42 0.0018 10.9 3.3 30 284-315 15-44 (44)
10 3ixz_B Potassium-transporting 10.6 50 0.0021 10.4 2.1 52 1-52 1-71 (290)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.55 E-value=1e-07 Score=57.78 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53344211579999999862586999999-9999999999999997888998999999999999999999999
Q gi|254780575|r 234 IGYGLLNSFVFCIFSYGIKRAKLSTVGIM-EYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTV 305 (316)
Q Consensus 234 ~l~~~~t~i~~~~~~~a~~~~~a~~~s~~-~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~~ 305 (316)
...+++-.++++++..++|++|.+.+=.+ .-+..+.+++.|+++|||++++.+++|..+|++|+++..+.+.
T Consensus 34 i~~i~~y~~sf~~ls~alk~iplgvAYAiWsGlG~v~~~lig~~~f~E~ls~~~ilgi~LIi~GVv~Lnl~s~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCC
T ss_conf 9999999999999999997398422799998899999999999994799989999999999999982220578
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.99 E-value=2e-05 Score=45.32 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3344211579999999862586999-999999999999999999788899899999999999999999999
Q gi|254780575|r 235 GYGLLNSFVFCIFSYGIKRAKLSTV-GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPT 304 (316)
Q Consensus 235 l~~~~t~i~~~~~~~a~~~~~a~~~-s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~~~~ 304 (316)
.....-.+++++...++|++|.+.+ ++-.-+.-+.+++.|++++||++++.+++|..+|+.|+++.++.+
T Consensus 35 ~~~~~~~~sf~~ls~al~~lp~gvaYAiW~G~G~v~~~l~g~~~f~e~~~~~~~~gi~lIi~Gvv~l~l~s 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999648851379989988999999999999379998999999999999998300146
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3hqk_A
Probab=26.09 E-value=20 Score=12.55 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=7.7
Q ss_pred CCCCCCCCH-HHHHHHHHHHHHH
Q ss_conf 474401452-7799999999999
Q gi|254780575|r 14 LSKENASLP-TMMGTLFVFCAYI 35 (316)
Q Consensus 14 ~~~~~~~~~-~~~G~~~~l~a~~ 35 (316)
|+++..+++ ...+..+...++.
T Consensus 1 m~~~~~~~klg~~~~~~l~~g~~ 23 (445)
T 3l1l_A 1 MSSDADAHKVGLIPVTLMVSGAI 23 (445)
T ss_dssp ------CCCBCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99987789818999999999999
No 4
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=25.76 E-value=21 Score=12.52 Aligned_cols=60 Identities=7% Similarity=-0.061 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1579999999862586999999999999999999999788899899999999999999999
Q gi|254780575|r 241 SFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 241 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~~ 301 (316)
.+-|++...-.+.......-++.----+.+++++.++.|.+++...++|.+. ++|+++.+
T Consensus 881 ~lI~liL~~~F~S~~~pliIl~tIPlal~G~~~~l~l~g~~l~~~sliG~i~-L~GivVnn 940 (1052)
T 2v50_A 881 LVVFLCLAALYESWSIPFSVMLVVPLGVIGALLATSMRGLSNDVFFQVGLLT-TIGLSAKN 940 (1052)
T ss_dssp HHHHHHHHHHTTCSSTTHHHHTHHHHHHTTHHHHHHHTTCCBSHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHC
T ss_conf 9999999999851999999999999999999999999778825999999999-99999956
No 5
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Probab=25.72 E-value=12 Score=13.85 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999999999999987755
Q gi|254780575|r 283 DTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 (316)
Q Consensus 283 ~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~ 312 (316)
++...+|..+++.+++++...-.++.+|||
T Consensus 423 ~~f~~i~~~~~~~~l~~i~~~i~~~~~~rk 452 (453)
T 3hun_A 423 PLFTIIGGTCLVAGLALIVHMIINRLFRKR 452 (453)
T ss_dssp ------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 759999999999999999999999987405
No 6
>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ...
Probab=23.67 E-value=23 Score=12.29 Aligned_cols=32 Identities=6% Similarity=-0.061 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999978889989999999999999999
Q gi|254780575|r 268 LLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVY 300 (316)
Q Consensus 268 v~a~i~~~~~l~E~~~~~~~iG~~lIi~gv~l~ 300 (316)
+.+++++.++.|.+++...++|.+.. +|+++.
T Consensus 909 liG~~~~l~l~g~~l~~~sliG~i~L-~GIvVn 940 (1055)
T 2j8s_A 909 VIGALLAATFRGLTNDVYFQVGLLTT-IGLSAK 940 (1055)
T ss_dssp HHHHHHHHHHHTCCBSHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHH
T ss_conf 99999999997687469999999999-999984
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.57 E-value=23 Score=12.28 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=3.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780575|r 291 GIVVIAMVVYL 301 (316)
Q Consensus 291 ~lIi~gv~l~~ 301 (316)
++-++|+++..
T Consensus 27 vlf~~Giliil 37 (67)
T 2jp3_A 27 LLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 8
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=13.90 E-value=39 Score=11.02 Aligned_cols=51 Identities=8% Similarity=-0.090 Sum_probs=26.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHHHHHHHHHHHHHH
Q ss_conf 86258699999999999999999999978889-------------9899999999999999999
Q gi|254780575|r 251 IKRAKLSTVGIMEYTAPLLMIVSSVFILKQPI-------------DTVRTIVFGIVVIAMVVYL 301 (316)
Q Consensus 251 ~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~-------------~~~~~iG~~lIi~gv~l~~ 301 (316)
+|.-++..+-.+-..--+++.+..=++-++.. =..|++|.+.++.=..+.+
T Consensus 293 lkIDD~v~a~~vHg~~Gi~G~ia~giFa~~~~~~~~g~~~g~~~ql~~Ql~gi~~i~~w~~~~s 356 (399)
T 2b2h_A 293 KKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQLLVSQLIAVASTTAYAFLVT 356 (399)
T ss_dssp TTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGGTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5677744504320035404435420204654467674015879999999999998777999999
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=12.94 E-value=42 Score=10.86 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999999999999999987755621
Q gi|254780575|r 284 TVRTIVFGIVVIAMVVYLLPTVINSGKNKTKK 315 (316)
Q Consensus 284 ~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~k 315 (316)
.....|..+.+ ++.+...-..++||+|-||
T Consensus 15 iatv~gill~l--vi~vv~gilikrr~qkirk 44 (44)
T 2jwa_A 15 ISAVVGILLVV--VLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999--9999999997988887039
No 10
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa}
Probab=10.65 E-value=50 Score=10.44 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHCCCCCC-----CCCCHHHHH--------------HHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 97754714420014744-----014527799--------------99999999999999999999638988
Q gi|254780575|r 1 MGKGATKKEYSKGLSKE-----NASLPTMMG--------------TLFVFCAYILWGITPLYTQFLEQVSV 52 (316)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-----~~~~~~~~G--------------~~~~l~a~~lwg~~~~~~k~l~~~~p 52 (316)
|-+-++++..++++.+= |.+.+..+| ++++++|++..+...++...+++-.|
T Consensus 1 ~~~~~ek~~~~~~~~~fk~fl~n~~~~~~lGRT~~sW~kI~lFYliFY~~La~~Fa~~m~v~~~tl~~~~P 71 (290)
T 3ixz_B 1 MAALQEKKSCSQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTP 71 (290)
T ss_pred CCHHHHHHHHHHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 93066555698888888875785888916175764799999999999999999999999999987688899
Done!