Query gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 316 No_of_seqs 200 out of 5855 Neff 10.4 Searched_HMMs 13730 Date Wed Jun 1 09:24:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780575.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1iwga7 f.35.1.1 (A:7-37,A:331 20.5 15 0.0011 11.9 10.9 26 138-163 60-85 (199) 2 d1r3jc_ f.14.1.1 (C:) Potassiu 8.1 38 0.0027 9.8 4.5 18 298-315 85-102 (103) 3 d1x2ma1 a.4.1.1 (A:8-59) Lag1 5.7 60 0.0044 8.7 1.7 35 281-316 18-52 (52) 4 d1gl4a1 d.22.1.2 (A:399-631) D 3.2 45 0.0033 9.4 -2.2 27 251-278 45-71 (233) 5 d1wi3a_ a.4.1.1 (A:) DNA-bindi 2.9 1.4E+02 0.0098 6.8 1.7 15 301-315 51-65 (71) 6 d1u7ga_ f.44.1.1 (A:) Ammonium 2.7 1.5E+02 0.011 6.5 18.0 71 233-303 283-370 (383) 7 d3dtub2 f.17.2.1 (B:30-129) Ba 2.2 1.9E+02 0.014 6.0 2.8 27 290-316 36-62 (100) 8 d2axtb1 f.55.1.1 (B:2-489) Pho 2.0 2.1E+02 0.015 5.7 3.9 36 4-39 117-152 (488) 9 d1ppjd2 f.23.11.1 (D:196-241) 2.0 2.1E+02 0.015 5.7 3.5 29 17-45 1-29 (46) 10 d1ffta_ f.24.1.1 (A:) Cytochro 1.9 2.3E+02 0.016 5.5 1.3 37 280-316 441-477 (501) No 1 >d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Probab=20.45 E-value=15 Score=11.92 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=12.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 02356437999999998656556623 Q gi|254780575|r 138 FLKERLNHLQIIAALLIILSLLIMTL 163 (316) Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 163 (316) .+.-+........+..+..+...... T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~ 85 (199) T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLA 85 (199) T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHEECCCCCHHHHHHHHHHH T ss_conf 86015463110011002677788762 No 2 >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Probab=8.14 E-value=38 Score=9.81 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999987755621 Q gi|254780575|r 298 VVYLLPTVINSGKNKTKK 315 (316) Q Consensus 298 ~l~~~~~~~~~~k~~~~k 315 (316) .+-.+.+...++++|+|| T Consensus 85 ~~~~i~~~~~~~~~~rr~ 102 (103) T d1r3jc_ 85 VTAALATWFVGREQERRG 102 (103) T ss_dssp HHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999998518 No 3 >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Probab=5.67 E-value=60 Score=8.70 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=21.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 899899999999999999999999999877556219 Q gi|254780575|r 281 PIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTKKS 316 (316) Q Consensus 281 ~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~k~ 316 (316) .|+..+.-..+-- .|+-.-.+..|.+.+|.+.|+| T Consensus 18 ~P~~~~~~~LA~~-~~ls~~qV~~WFqNrR~k~k~s 52 (52) T d1x2ma1 18 HPDEKRLEGLSKQ-LDWDVRSIQRWFRQRRNQEKPS 52 (52) T ss_dssp SCCHHHHHHHHHH-HCSCHHHHHHHHHHHHHHSCCS T ss_pred CCCHHHHHHHHHH-HCCCHHHHHHHHHHHHCCCCCC T ss_conf 9399999999999-7969999899878604433858 No 4 >d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.19 E-value=45 Score=9.37 Aligned_cols=27 Identities=15% Similarity=-0.011 Sum_probs=11.8 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8625869999999999999999999997 Q gi|254780575|r 251 IKRAKLSTVGIMEYTAPLLMIVSSVFIL 278 (316) Q Consensus 251 ~~~~~a~~~s~~~~l~Pv~a~i~~~~~l 278 (316) +..+|++....+..+.|+.+.+ +|+|- T Consensus 45 Is~IP~~~G~~L~~L~~ig~~i-gWlFA 71 (233) T d1gl4a1 45 ISTIPETVGYSLLPLAPIGGII-GWMFA 71 (233) T ss_dssp EESCCHHHHGGGTTCTHHHHHH-HHHTC T ss_pred CCCCCHHHHHHHHHHHHHCCCE-EEEEE T ss_conf 1579936703453043424726-46678 No 5 >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.94 E-value=1.4e+02 Score=6.77 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=5.9 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999987755621 Q gi|254780575|r 301 LLPTVINSGKNKTKK 315 (316) Q Consensus 301 ~~~~~~~~~k~~~~k 315 (316) .+..|.+.+|.+.|| T Consensus 51 qV~~WFqNrR~k~kk 65 (71) T d1wi3a_ 51 TIIKFFQNQRYHVKH 65 (71) T ss_dssp HHHHHHHHHHHHCCS T ss_pred HHHHHHHHHHHHHCC T ss_conf 999981855766513 No 6 >d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Probab=2.68 E-value=1.5e+02 Score=6.51 Aligned_cols=71 Identities=8% Similarity=-0.085 Sum_probs=35.2 Q ss_pred HHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---------C-----HHHHHHHHHHHH Q ss_conf 653344211579999999---86258699999999999999999999978889---------9-----899999999999 Q gi|254780575|r 233 LIGYGLLNSFVFCIFSYG---IKRAKLSTVGIMEYTAPLLMIVSSVFILKQPI---------D-----TVRTIVFGIVVI 295 (316) Q Consensus 233 l~l~~~~t~i~~~~~~~a---~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~---------~-----~~~~iG~~lIi~ 295 (316) +..+.++..+.+..+..- .|.-++..+-.+-..-=+++.+..=++-.+.. + ..|+.|.+.++. T Consensus 283 ~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~ 362 (383) T d1u7ga_ 283 LIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIV 362 (383) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99886210778899999986601366465670321368999988998267444665654541268999999999999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780575|r 296 AMVVYLLP 303 (316) Q Consensus 296 gv~l~~~~ 303 (316) -..+.+.- T Consensus 363 ~~~~~~~i 370 (383) T d1u7ga_ 363 WSGVVAFI 370 (383) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 7 >d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]} Probab=2.21 E-value=1.9e+02 Score=5.97 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999877556219 Q gi|254780575|r 290 FGIVVIAMVVYLLPTVINSGKNKTKKS 316 (316) Q Consensus 290 ~~lIi~gv~l~~~~~~~~~~k~~~~k~ 316 (316) +..|...+......-..+.|++|.++. T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~~~~~ 62 (100) T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKRNKVP 62 (100) T ss_dssp HHHHHHHHHHHHHHHHHHHBTTTCCSC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999999623113599887 No 8 >d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]} Probab=2.05 E-value=2.1e+02 Score=5.74 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=0.0 Q ss_pred CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 547144200147440145277999999999999999 Q gi|254780575|r 4 GATKKEYSKGLSKENASLPTMMGTLFVFCAYILWGI 39 (316) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~lwg~ 39 (316) ++.+..++....++..+.++++|+.+.+...++++. T Consensus 117 gp~~l~~~~~~~~~~~d~~kilGihL~~lgll~~~f 152 (488) T d2axtb1 117 WDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGF 152 (488) T ss_dssp CCCGGGBCSSSSSBCCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH T ss_conf 660132287668511040544045989999999999 No 9 >d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]} Probab=2.02 E-value=2.1e+02 Score=5.71 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=0.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 40145277999999999999999999999 Q gi|254780575|r 17 ENASLPTMMGTLFVFCAYILWGITPLYTQ 45 (316) Q Consensus 17 ~~~~~~~~~G~~~~l~a~~lwg~~~~~~k 45 (316) .+.+.+...|+-.++..+++.+..+..-| T Consensus 1 Pe~d~RK~mG~Kv~~~l~~l~~l~yy~KR 29 (46) T d1ppjd2 1 PEHDHRKRMGLKMLLMMGLLLPLVYAMKR 29 (46) T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 95578999799999999999999999999 No 10 >d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]} Probab=1.91 E-value=2.3e+02 Score=5.55 Aligned_cols=37 Identities=0% Similarity=0.132 Sum_probs=0.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8899899999999999999999999999877556219 Q gi|254780575|r 280 QPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTKKS 316 (316) Q Consensus 280 E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~k~ 316 (316) |..+...-+|..+...|..+....-...-++++++|. T Consensus 441 ~~~~~~~~~g~~i~~~~~~~f~~~~~~s~~~~~~~~~ 477 (501) T d1ffta_ 441 HTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRD 477 (501) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 9999999999999999999999999999995204787 Done!