Query         gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 316
No_of_seqs    200 out of 5855
Neff          10.4
Searched_HMMs 13730
Date          Wed Jun  1 09:24:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780575.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1iwga7 f.35.1.1 (A:7-37,A:331  20.5      15  0.0011   11.9  10.9   26  138-163    60-85  (199)
  2 d1r3jc_ f.14.1.1 (C:) Potassiu   8.1      38  0.0027    9.8   4.5   18  298-315    85-102 (103)
  3 d1x2ma1 a.4.1.1 (A:8-59) Lag1    5.7      60  0.0044    8.7   1.7   35  281-316    18-52  (52)
  4 d1gl4a1 d.22.1.2 (A:399-631) D   3.2      45  0.0033    9.4  -2.2   27  251-278    45-71  (233)
  5 d1wi3a_ a.4.1.1 (A:) DNA-bindi   2.9 1.4E+02  0.0098    6.8   1.7   15  301-315    51-65  (71)
  6 d1u7ga_ f.44.1.1 (A:) Ammonium   2.7 1.5E+02   0.011    6.5  18.0   71  233-303   283-370 (383)
  7 d3dtub2 f.17.2.1 (B:30-129) Ba   2.2 1.9E+02   0.014    6.0   2.8   27  290-316    36-62  (100)
  8 d2axtb1 f.55.1.1 (B:2-489) Pho   2.0 2.1E+02   0.015    5.7   3.9   36    4-39    117-152 (488)
  9 d1ppjd2 f.23.11.1 (D:196-241)    2.0 2.1E+02   0.015    5.7   3.5   29   17-45      1-29  (46)
 10 d1ffta_ f.24.1.1 (A:) Cytochro   1.9 2.3E+02   0.016    5.5   1.3   37  280-316   441-477 (501)

No 1  
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=20.45  E-value=15  Score=11.92  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=12.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             02356437999999998656556623
Q gi|254780575|r  138 FLKERLNHLQIIAALLIILSLLIMTL  163 (316)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~g~~~~~~  163 (316)
                      .+.-+........+..+..+......
T Consensus        60 ~rs~~~~li~~~~i~~~i~~~~~~m~   85 (199)
T d1iwga7          60 LQNFRATLIPTIAVPVVLLGTFAVLA   85 (199)
T ss_dssp             CCCTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHEECCCCCHHHHHHHHHHH
T ss_conf             86015463110011002677788762


No 2  
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.14  E-value=38  Score=9.81  Aligned_cols=18  Identities=17%  Similarity=0.130  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999987755621
Q gi|254780575|r  298 VVYLLPTVINSGKNKTKK  315 (316)
Q Consensus       298 ~l~~~~~~~~~~k~~~~k  315 (316)
                      .+-.+.+...++++|+||
T Consensus        85 ~~~~i~~~~~~~~~~rr~  102 (103)
T d1r3jc_          85 VTAALATWFVGREQERRG  102 (103)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999998518


No 3  
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.67  E-value=60  Score=8.70  Aligned_cols=35  Identities=17%  Similarity=0.064  Sum_probs=21.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             899899999999999999999999999877556219
Q gi|254780575|r  281 PIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTKKS  316 (316)
Q Consensus       281 ~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~k~  316 (316)
                      .|+..+.-..+-- .|+-.-.+..|.+.+|.+.|+|
T Consensus        18 ~P~~~~~~~LA~~-~~ls~~qV~~WFqNrR~k~k~s   52 (52)
T d1x2ma1          18 HPDEKRLEGLSKQ-LDWDVRSIQRWFRQRRNQEKPS   52 (52)
T ss_dssp             SCCHHHHHHHHHH-HCSCHHHHHHHHHHHHHHSCCS
T ss_pred             CCCHHHHHHHHHH-HCCCHHHHHHHHHHHHCCCCCC
T ss_conf             9399999999999-7969999899878604433858


No 4  
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.19  E-value=45  Score=9.37  Aligned_cols=27  Identities=15%  Similarity=-0.011  Sum_probs=11.8

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8625869999999999999999999997
Q gi|254780575|r  251 IKRAKLSTVGIMEYTAPLLMIVSSVFIL  278 (316)
Q Consensus       251 ~~~~~a~~~s~~~~l~Pv~a~i~~~~~l  278 (316)
                      +..+|++....+..+.|+.+.+ +|+|-
T Consensus        45 Is~IP~~~G~~L~~L~~ig~~i-gWlFA   71 (233)
T d1gl4a1          45 ISTIPETVGYSLLPLAPIGGII-GWMFA   71 (233)
T ss_dssp             EESCCHHHHGGGTTCTHHHHHH-HHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCE-EEEEE
T ss_conf             1579936703453043424726-46678


No 5  
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.94  E-value=1.4e+02  Score=6.77  Aligned_cols=15  Identities=7%  Similarity=0.144  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             999999987755621
Q gi|254780575|r  301 LLPTVINSGKNKTKK  315 (316)
Q Consensus       301 ~~~~~~~~~k~~~~k  315 (316)
                      .+..|.+.+|.+.||
T Consensus        51 qV~~WFqNrR~k~kk   65 (71)
T d1wi3a_          51 TIIKFFQNQRYHVKH   65 (71)
T ss_dssp             HHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999981855766513


No 6  
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.68  E-value=1.5e+02  Score=6.51  Aligned_cols=71  Identities=8%  Similarity=-0.085  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---------C-----HHHHHHHHHHHH
Q ss_conf             653344211579999999---86258699999999999999999999978889---------9-----899999999999
Q gi|254780575|r  233 LIGYGLLNSFVFCIFSYG---IKRAKLSTVGIMEYTAPLLMIVSSVFILKQPI---------D-----TVRTIVFGIVVI  295 (316)
Q Consensus       233 l~l~~~~t~i~~~~~~~a---~~~~~a~~~s~~~~l~Pv~a~i~~~~~l~E~~---------~-----~~~~iG~~lIi~  295 (316)
                      +..+.++..+.+..+..-   .|.-++..+-.+-..-=+++.+..=++-.+..         +     ..|+.|.+.++.
T Consensus       283 ~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~  362 (383)
T d1u7ga_         283 LIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIV  362 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99886210778899999986601366465670321368999988998267444665654541268999999999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780575|r  296 AMVVYLLP  303 (316)
Q Consensus       296 gv~l~~~~  303 (316)
                      -..+.+.-
T Consensus       363 ~~~~~~~i  370 (383)
T d1u7ga_         363 WSGVVAFI  370 (383)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 7  
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.21  E-value=1.9e+02  Score=5.97  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999877556219
Q gi|254780575|r  290 FGIVVIAMVVYLLPTVINSGKNKTKKS  316 (316)
Q Consensus       290 ~~lIi~gv~l~~~~~~~~~~k~~~~k~  316 (316)
                      +..|...+......-..+.|++|.++.
T Consensus        36 ~~~I~~~V~~~l~~~~~~~r~~~~~~~   62 (100)
T d3dtub2          36 IAAITIFVTLLILYAVWRFHEKRNKVP   62 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999999623113599887


No 8  
>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.05  E-value=2.1e+02  Score=5.74  Aligned_cols=36  Identities=14%  Similarity=0.231  Sum_probs=0.0

Q ss_pred             CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             547144200147440145277999999999999999
Q gi|254780575|r    4 GATKKEYSKGLSKENASLPTMMGTLFVFCAYILWGI   39 (316)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~lwg~   39 (316)
                      ++.+..++....++..+.++++|+.+.+...++++.
T Consensus       117 gp~~l~~~~~~~~~~~d~~kilGihL~~lgll~~~f  152 (488)
T d2axtb1         117 WDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGF  152 (488)
T ss_dssp             CCCGGGBCSSSSSBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf             660132287668511040544045989999999999


No 9  
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.02  E-value=2.1e+02  Score=5.71  Aligned_cols=29  Identities=10%  Similarity=0.087  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40145277999999999999999999999
Q gi|254780575|r   17 ENASLPTMMGTLFVFCAYILWGITPLYTQ   45 (316)
Q Consensus        17 ~~~~~~~~~G~~~~l~a~~lwg~~~~~~k   45 (316)
                      .+.+.+...|+-.++..+++.+..+..-|
T Consensus         1 Pe~d~RK~mG~Kv~~~l~~l~~l~yy~KR   29 (46)
T d1ppjd2           1 PEHDHRKRMGLKMLLMMGLLLPLVYAMKR   29 (46)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95578999799999999999999999999


No 10 
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=1.91  E-value=2.3e+02  Score=5.55  Aligned_cols=37  Identities=0%  Similarity=0.132  Sum_probs=0.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8899899999999999999999999999877556219
Q gi|254780575|r  280 QPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNKTKKS  316 (316)
Q Consensus       280 E~~~~~~~iG~~lIi~gv~l~~~~~~~~~~k~~~~k~  316 (316)
                      |..+...-+|..+...|..+....-...-++++++|.
T Consensus       441 ~~~~~~~~~g~~i~~~~~~~f~~~~~~s~~~~~~~~~  477 (501)
T d1ffta_         441 HTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRD  477 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999999999999999999999995204787


Done!