RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780575|ref|YP_003064988.1| hypothetical protein
CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
         (316 letters)



>gnl|CDD|32782 COG2962, RarD, Predicted permeases [General function prediction
           only].
          Length = 293

 Score =  182 bits (464), Expect = 9e-47
 Identities = 93/288 (32%), Positives = 157/288 (54%), Gaps = 3/288 (1%)

Query: 26  GTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTL 85
           G L    AY+LWG+ PLY + LE +   E+++HRV+WS P +  A+++       LK  L
Sbjct: 8   GILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFML-ALLFLLRQWRELKQLL 66

Query: 86  KNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNH 145
           K PK + ML  +A ++ ++W  FI+A+        S  YF+ P+++V LG +FLKERL+ 
Sbjct: 67  KQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR 126

Query: 146 LQIIAALLIILSLLIMTLHSG-IPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLA 204
           LQ IA  L    +LI T   G +P ++LA+A+++  Y   RK + V +  G  +E  +L 
Sbjct: 127 LQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVDALTGLTLETLLLL 186

Query: 205 IPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEY 264
             AL Y+++   SG            L L+  GL+ +    +F+   KR  LST+G ++Y
Sbjct: 187 PVALIYLLFLADSGQF-LQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQY 245

Query: 265 TAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312
             P LM + +V I  +P D+ + + F  + +A+ ++ +  +  + K +
Sbjct: 246 IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKKR 293


>gnl|CDD|144477 pfam00892, EamA, EamA-like transporter family.  This family
           includes many hypothetical membrane proteins of unknown
           function. Many of the proteins contain two copies of the
           aligned region. The family used to be known as DUF6.
          Length = 126

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 35  ILWGITPLYTQ-FLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGM 93
           + W +  ++++  LE++S L   ++R L +   +   +       +LL  +LK   A+  
Sbjct: 1   LSWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALL--SLKAILALLY 58

Query: 94  LVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALL 153
           L    T L   +  + YAL        S    ++PV ++ L  + L E+L   Q++  +L
Sbjct: 59  LGLFGTALG--YLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116

Query: 154 IILSLLIMTL 163
           I+L +L++ L
Sbjct: 117 ILLGVLLILL 126



 Score = 31.4 bits (72), Expect = 0.29
 Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 183 FARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSF 242
           F++K +   S   F     ++A   L  ++   F   + F L ++   L L+  GL  + 
Sbjct: 9   FSKKLLERISPLTFTAYRFLIAGILLILLL---FLLRKPFALLSLKAILALLYLGLFGTA 65

Query: 243 V-FCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301
           + + ++ Y +K    S   ++   +P+  ++ SV +L + +   + +   ++++ +++ L
Sbjct: 66  LGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLIL 125

Query: 302 L 302
           L
Sbjct: 126 L 126


>gnl|CDD|32580 COG2510, COG2510, Predicted membrane protein [Function unknown].
          Length = 140

 Score = 34.4 bits (79), Expect = 0.038
 Identities = 19/77 (24%), Positives = 36/77 (46%)

Query: 87  NPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHL 146
            PK+   L+ S     + W  +  AL   +          + V++V L  +FL ERL+  
Sbjct: 63  GPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP 122

Query: 147 QIIAALLIILSLLIMTL 163
             I  +LI++  ++++L
Sbjct: 123 TWIGIVLIVIGAILVSL 139


>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
           (glycosyltransferases) [Cell wall/membrane/envelope
           biogenesis].
          Length = 862

 Score = 32.3 bits (73), Expect = 0.17
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 26/205 (12%)

Query: 50  VSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFI 109
            S LE ++ R  W L  +F A  Y        ++ L N      L       A+   FFI
Sbjct: 581 ESFLEFLNQRRRW-LNSIFNAADYLIDHFYYFEENLHNSLRYHTLHVEMLYFAILGPFFI 639

Query: 110 YALLT-------RQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMT 162
           +++         R     S  + + P++   L  +     L    + A     + +L M+
Sbjct: 640 FSMANFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFS--LFMQLLGARPRGNVYMLAMS 697

Query: 163 LHSGIPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHF 222
           L+S + + SL  A   +          +G+S   FI + +  +       ++  + G  +
Sbjct: 698 LYSVLIIYSLLCAGVLAPASLF--EGLLGTS--GFIAIIISPLE------FHMLTPGVVY 747

Query: 223 FLGNIPDTLFLIGYGLLNSFVFCIF 247
            L      L    Y +L  + FC F
Sbjct: 748 IL------LLPSWYFVLPIYAFCNF 766


>gnl|CDD|36274 KOG1056, KOG1056, KOG1056, Glutamate-gated metabotropic ion channel
           receptor subunit GRM2 and related subunits, G-protein
           coupled receptor superfamily [Inorganic ion transport
           and metabolism, Signal transduction mechanisms].
          Length = 878

 Score = 28.0 bits (62), Expect = 3.6
 Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 37/251 (14%)

Query: 19  ASLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGL 78
            ++  ++ TLFV   ++ +  TP+      ++S + ++   + ++    FF I   +   
Sbjct: 568 LAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFLCYAST--FFFIAEPTDIS 625

Query: 79  SLLKDTLKNPKAVG----MLVFSATILAVHWGFF------IYALLTRQGFLTSFSYFVTP 128
             L+ T            +L  +  I  +            +     Q  +T     +  
Sbjct: 626 CRLRRTFLGLGFTICYSALLTKTNRIARIFEFSKKSIQRPRFISPWSQVLITFILIGIQL 685

Query: 129 VISVFL------GSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYC 182
           VI V        GSV        + I+    + L  L+   +SG+      + ++ + Y 
Sbjct: 686 VICVSWLVVEPPGSVRTYVSRREVVILKCTEVDLGFLLSLGYSGL------LILSCTVYA 739

Query: 183 FARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGF----SGGEHFFLGNIPDTLFLIGYGL 238
           F  + +P   +E  FI   +        ++W  F     G +H       D    I   L
Sbjct: 740 FKTRNLPENFNEAKFIGFTMY----TTCIIWLAFIPIYFGTDHKIQ----DATLCISLSL 791

Query: 239 LNSFVF-CIFS 248
             S    C+F 
Sbjct: 792 SASVALGCLFI 802


>gnl|CDD|143896 pfam00122, E1-E2_ATPase, E1-E2 ATPase. 
          Length = 222

 Score = 27.9 bits (63), Expect = 3.9
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 116 QGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPL-LSLAI 174
           Q  L   +  + P++      VFL        ++ ALL  L++L+      +PL + LA+
Sbjct: 141 QRLLDKLAKILVPIVLALAILVFLIWFFRGGPLLEALLRALAVLVAACPEALPLAVPLAL 200

Query: 175 AV 176
           AV
Sbjct: 201 AV 202


>gnl|CDD|114381 pfam05653, DUF803, Protein of unknown function (DUF803).  This
           family consists of several eukaryotic proteins of
           unknown function.
          Length = 300

 Score = 27.8 bits (62), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 129 VISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS 165
           +IS  L S FL E+LN    +  +L I+   ++ +H+
Sbjct: 88  IISAVLSSFFLNEKLNLFGKLGCVLCIVGSTVIVIHA 124


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.143    0.434 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,913,624
Number of extensions: 226301
Number of successful extensions: 1058
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1031
Number of HSP's successfully gapped: 200
Length of query: 316
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,232,491
Effective search space: 939613002
Effective search space used: 939613002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.9 bits)