RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62] (316 letters) >gnl|CDD|32782 COG2962, RarD, Predicted permeases [General function prediction only]. Length = 293 Score = 182 bits (464), Expect = 9e-47 Identities = 93/288 (32%), Positives = 157/288 (54%), Gaps = 3/288 (1%) Query: 26 GTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTL 85 G L AY+LWG+ PLY + LE + E+++HRV+WS P + A+++ LK L Sbjct: 8 GILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFML-ALLFLLRQWRELKQLL 66 Query: 86 KNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNH 145 K PK + ML +A ++ ++W FI+A+ S YF+ P+++V LG +FLKERL+ Sbjct: 67 KQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR 126 Query: 146 LQIIAALLIILSLLIMTLHSG-IPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLA 204 LQ IA L +LI T G +P ++LA+A+++ Y RK + V + G +E +L Sbjct: 127 LQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVDALTGLTLETLLLL 186 Query: 205 IPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGIMEY 264 AL Y+++ SG L L+ GL+ + +F+ KR LST+G ++Y Sbjct: 187 PVALIYLLFLADSGQF-LQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQY 245 Query: 265 TAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTVINSGKNK 312 P LM + +V I +P D+ + + F + +A+ ++ + + + K + Sbjct: 246 IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKKR 293 >gnl|CDD|144477 pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126 Score = 38.4 bits (90), Expect = 0.003 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 35 ILWGITPLYTQ-FLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGM 93 + W + ++++ LE++S L ++R L + + + +LL +LK A+ Sbjct: 1 LSWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALL--SLKAILALLY 58 Query: 94 LVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALL 153 L T L + + YAL S ++PV ++ L + L E+L Q++ +L Sbjct: 59 LGLFGTALG--YLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116 Query: 154 IILSLLIMTL 163 I+L +L++ L Sbjct: 117 ILLGVLLILL 126 Score = 31.4 bits (72), Expect = 0.29 Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 183 FARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSF 242 F++K + S F ++A L ++ F + F L ++ L L+ GL + Sbjct: 9 FSKKLLERISPLTFTAYRFLIAGILLILLL---FLLRKPFALLSLKAILALLYLGLFGTA 65 Query: 243 V-FCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYL 301 + + ++ Y +K S ++ +P+ ++ SV +L + + + + ++++ +++ L Sbjct: 66 LGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLIL 125 Query: 302 L 302 L Sbjct: 126 L 126 >gnl|CDD|32580 COG2510, COG2510, Predicted membrane protein [Function unknown]. Length = 140 Score = 34.4 bits (79), Expect = 0.038 Identities = 19/77 (24%), Positives = 36/77 (46%) Query: 87 NPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHL 146 PK+ L+ S + W + AL + + V++V L +FL ERL+ Sbjct: 63 GPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP 122 Query: 147 QIIAALLIILSLLIMTL 163 I +LI++ ++++L Sbjct: 123 TWIGIVLIVIGAILVSL 139 >gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]. Length = 862 Score = 32.3 bits (73), Expect = 0.17 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 26/205 (12%) Query: 50 VSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFI 109 S LE ++ R W L +F A Y ++ L N L A+ FFI Sbjct: 581 ESFLEFLNQRRRW-LNSIFNAADYLIDHFYYFEENLHNSLRYHTLHVEMLYFAILGPFFI 639 Query: 110 YALLT-------RQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMT 162 +++ R S + + P++ L + L + A + +L M+ Sbjct: 640 FSMANFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFS--LFMQLLGARPRGNVYMLAMS 697 Query: 163 LHSGIPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHF 222 L+S + + SL A + +G+S FI + + + ++ + G + Sbjct: 698 LYSVLIIYSLLCAGVLAPASLF--EGLLGTS--GFIAIIISPLE------FHMLTPGVVY 747 Query: 223 FLGNIPDTLFLIGYGLLNSFVFCIF 247 L L Y +L + FC F Sbjct: 748 IL------LLPSWYFVLPIYAFCNF 766 >gnl|CDD|36274 KOG1056, KOG1056, KOG1056, Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 878 Score = 28.0 bits (62), Expect = 3.6 Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 37/251 (14%) Query: 19 ASLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGL 78 ++ ++ TLFV ++ + TP+ ++S + ++ + ++ FF I + Sbjct: 568 LAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFLCYAST--FFFIAEPTDIS 625 Query: 79 SLLKDTLKNPKAVG----MLVFSATILAVHWGFF------IYALLTRQGFLTSFSYFVTP 128 L+ T +L + I + + Q +T + Sbjct: 626 CRLRRTFLGLGFTICYSALLTKTNRIARIFEFSKKSIQRPRFISPWSQVLITFILIGIQL 685 Query: 129 VISVFL------GSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYC 182 VI V GSV + I+ + L L+ +SG+ + ++ + Y Sbjct: 686 VICVSWLVVEPPGSVRTYVSRREVVILKCTEVDLGFLLSLGYSGL------LILSCTVYA 739 Query: 183 FARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGF----SGGEHFFLGNIPDTLFLIGYGL 238 F + +P +E FI + ++W F G +H D I L Sbjct: 740 FKTRNLPENFNEAKFIGFTMY----TTCIIWLAFIPIYFGTDHKIQ----DATLCISLSL 791 Query: 239 LNSFVF-CIFS 248 S C+F Sbjct: 792 SASVALGCLFI 802 >gnl|CDD|143896 pfam00122, E1-E2_ATPase, E1-E2 ATPase. Length = 222 Score = 27.9 bits (63), Expect = 3.9 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 116 QGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPL-LSLAI 174 Q L + + P++ VFL ++ ALL L++L+ +PL + LA+ Sbjct: 141 QRLLDKLAKILVPIVLALAILVFLIWFFRGGPLLEALLRALAVLVAACPEALPLAVPLAL 200 Query: 175 AV 176 AV Sbjct: 201 AV 202 >gnl|CDD|114381 pfam05653, DUF803, Protein of unknown function (DUF803). This family consists of several eukaryotic proteins of unknown function. Length = 300 Score = 27.8 bits (62), Expect = 4.5 Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 129 VISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS 165 +IS L S FL E+LN + +L I+ ++ +H+ Sbjct: 88 IISAVLSSFFLNEKLNLFGKLGCVLCIVGSTVIVIHA 124 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.329 0.143 0.434 Gapped Lambda K H 0.267 0.0653 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,913,624 Number of extensions: 226301 Number of successful extensions: 1058 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1031 Number of HSP's successfully gapped: 200 Length of query: 316 Length of database: 6,263,737 Length adjustment: 94 Effective length of query: 222 Effective length of database: 4,232,491 Effective search space: 939613002 Effective search space used: 939613002 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 57 (25.9 bits)