RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780575|ref|YP_003064988.1| hypothetical protein
CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
(316 letters)
>gnl|CDD|185328 PRK15430, PRK15430, putative chloramphenical resistance permease
RarD; Provisional.
Length = 296
Score = 122 bits (307), Expect = 1e-28
Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 6/286 (2%)
Query: 23 TMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFF--AIVYFSGGLSL 80
T G L AY +WGI P Y + + V E+++HRV+WS FF ++ S
Sbjct: 6 TRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSF---FFMVVLMSICRQWSY 62
Query: 81 LKDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLK 140
LK ++ P+ + ML SA ++ +W FI+A+ S YF+ P++++ LG +FL
Sbjct: 63 LKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLG 122
Query: 141 ERLNHLQIIAALLIILSLLIMTLHSG-IPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIE 199
ER +Q +A +L I +L+ G +P+++L +A +++ Y RK I V + G IE
Sbjct: 123 ERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIE 182
Query: 200 MCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTV 259
L A Y+ S H + L LI G++ + F+ R +LST+
Sbjct: 183 TMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTL 242
Query: 260 GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVYLLPTV 305
G +Y P LM + +V + + + F + +A+ ++++ +
Sbjct: 243 GFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288
>gnl|CDD|129771 TIGR00688, rarD, rarD protein. This uncharacterized protein is
predicted to have many membrane-spanning domains.
Length = 256
Score = 115 bits (290), Expect = 1e-26
Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 7/257 (2%)
Query: 26 GTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYF---SGGLSLLK 82
G + A L+G Y++ L+ + +++ HR++WS P + ++ F + + LK
Sbjct: 3 GIIVSLLASFLFGYMYYYSKLLKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLK 62
Query: 83 DTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKER 142
K P + L+ ++ +W FI+A+ S Y + P++ V LG VFLKER
Sbjct: 63 RIQKRPLIL-SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER 121
Query: 143 LNHLQIIAALLIILSLLI-MTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSSEGFFIEMC 201
++ Q IA ++ L ++ + L +P +L +A +++AY RK + GF +E
Sbjct: 122 ISRFQFIAVIIATLGVISNIVLKGSLPWEALVLAFSFTAYGLIRKALKNTDLAGFCLETL 181
Query: 202 VLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIFSYGIKRAKLSTVGI 261
L A++Y++ F+ + P L L+ GL+ F R L+ +G+
Sbjct: 182 SLMPVAIYYLLQTDFATVQQ--TNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGL 239
Query: 262 MEYTAPLLMIVSSVFIL 278
++Y P +M++ F++
Sbjct: 240 LQYIGPTIMMLCVSFLI 256
>gnl|CDD|183067 PRK11272, PRK11272, putative DMT superfamily transporter inner
membrane protein; Provisional.
Length = 292
Score = 36.1 bits (84), Expect = 0.012
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 90 AVGMLVFSATILAVHWGFFIYALL---TRQGFLTSFSYFVTPVISVFLGSVFLKERLNHL 146
A+G L +I+A Y L R TS++Y V PV++V LG+ E L+ +
Sbjct: 214 ALGYLAVFGSIIA----ISAYMYLLRNVRPALATSYAY-VNPVVAVLLGTGLGGETLSPI 268
Query: 147 QIIAALLIILSLLIMTL 163
+ +A +I+ +++++TL
Sbjct: 269 EWLALGVIVFAVVLVTL 285
>gnl|CDD|162128 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter.
Length = 260
Score = 35.4 bits (82), Expect = 0.018
Identities = 48/291 (16%), Positives = 100/291 (34%), Gaps = 48/291 (16%)
Query: 25 MGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDT 84
GT V L G PLY ++ FA++ L LL+
Sbjct: 1 WGTTGVVIGQYLEGQVPLYFAVFRRL-----------------IFALLLL---LPLLRRR 40
Query: 85 LKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLN 144
+ + +L+ A + V + + A+ + ++ P+ L + KER
Sbjct: 41 PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPR 100
Query: 145 HLQIIAALLIILSLLIMTLHSGIP------LLSLAIAVTWSAYCFARKTI--------PV 190
L ++AA+L + +++ + LL L ++++ K +
Sbjct: 101 KLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQ 160
Query: 191 GSSEGFFIEMCVLAIPALFYV---VWNGFSGGEHFFLGNIPDTLFLIGYGLLNSFVFCIF 247
+ + +L A F G +LG I + Y L +
Sbjct: 161 FTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGT---ALAYFL--------W 209
Query: 248 SYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMV 298
+ G+ S I+ PL+ ++ + IL + + + I +++ A++
Sbjct: 210 NKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260
>gnl|CDD|182956 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 31.4 bits (72), Expect = 0.29
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 268 LLMIVSSVFILK-----QPIDTVRTIVFGIVVIAMVVYLLPTVI 306
L M+V + + ID +R+I FG+++ VY L V+
Sbjct: 34 LAMVVQMAVTMVLHGQVESIDVIRSIFFGLLITPWAVYFLSVVV 77
>gnl|CDD|163382 TIGR03662, Chlor_Arch_YYY, Chlor_Arch_YYY domain. Members of this
highly hydrophobic probable integral membrane family
belong to two classes. In one, a single copy of the
region modeled by This model represents essentially the
full length of a strongly hydrophobic protein of about
700 to 900 residues (variable because of long inserts in
some). The domain architecture of the other class
consists of an additional N-terminal region, two copies
of the region represented by this model, and three to
four repeats of TPR, or tetratricopeptide repeat. The
unusual species range includes several Archaea, several
Chloroflexi, and Clostridium phytofermentans. An unusual
motif YYYxG is present, and we suggest the name
Chlor_Arch_YYY protein. The function is unknown.
Length = 723
Score = 30.8 bits (70), Expect = 0.42
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 11/132 (8%)
Query: 90 AVGMLVFSATILAVHW-----GFFIYALLTRQG---FLTSFSYFVTPVISVFLGSVFLKE 141
V L+ A W G I + TR FL F+ IS + +
Sbjct: 369 PVLSLLLYAPFYLSFWQGPASGRGIGLVETRTTIHQFLIIHGLFLFLFISFLITGLTGDS 428
Query: 142 RLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSSEGF-FIEM 200
R + I I LL ++L GIPLL+L + + + + R+ PVG +
Sbjct: 429 RRKKARWILLAPFIALLLGLSL--GIPLLALLLPLLVTTWLLRRRDAPVGFETLLALGGL 486
Query: 201 CVLAIPALFYVV 212
+L + + YV
Sbjct: 487 GLLLLVEIIYVR 498
>gnl|CDD|179267 PRK01265, PRK01265, heat shock protein HtpX; Provisional.
Length = 324
Score = 30.5 bits (69), Expect = 0.52
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 200 MCVLAIPALFY-----VVWNGFSGGEHFFLGNIPDTLFLIGYGLLN-SFVFCIFSYGIKR 253
M + IP L Y + W G GG GN LFLIG L+ SFVF + I R
Sbjct: 160 MAIGLIPTLIYYLGYSLFWGGMFGGGGGGRGNNGGLLFLIGIALMAVSFVFNLLVLSINR 219
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 29.9 bits (67), Expect = 0.88
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 85 LKNPKAVGMLVFSATILAVHWGFFIY---ALLTRQGF------LTSFSYFVTPVISVFLG 135
L+ P + ++ A + FF Y + GF L S+ + + L
Sbjct: 213 LQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLS 272
Query: 136 SVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSAYCFARKTIPVGSS 193
S LK + A L++ +S L++TL +++ +A+ W +PVG S
Sbjct: 273 SFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG---LTFALVPVGWS 327
>gnl|CDD|149708 pfam08733, PalH, PalH/RIM21. PalH (also known as RIM21) is a
transmembrane protein required for proteolytic cleavage
of Rim101/PacC transcription factors which are activated
by C terminal proteolytic processing. Rim101/PacC family
proteins play a key role in pH-dependent responses and
PalH has been implicated as a pH sensor.
Length = 346
Score = 26.9 bits (60), Expect = 7.7
Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 26 GTLFVFCAYILWGITPLYTQFLEQVSVLEVIS--HRVLWSLPGVFFA--IVYFSGGLSLL 81
G + + ILW I + S +++ + G +A I+Y++ +S
Sbjct: 197 GFILIIVDQILWAINLFHYNNTRPRSASDILPAFIYLFRLALGTLYAAIIIYYT--ISKK 254
Query: 82 KDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLTSFSYFVTPVISV 132
K K + + + + ++ + FFI L ++ +S + ++ V
Sbjct: 255 KLCYSYKKIIPLALLTILLILLPVVFFI--LDISNWWVREWSELFSWLLYV 303
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 26.8 bits (60), Expect = 8.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 111 ALLTRQGFLTSFSYFVTPVISV 132
A R+ F+T+ S FV PV+ +
Sbjct: 235 AYAAREAFITAASSFVFPVVQI 256
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.329 0.143 0.434
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,205,290
Number of extensions: 349742
Number of successful extensions: 1145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 124
Length of query: 316
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 223
Effective length of database: 3,984,929
Effective search space: 888639167
Effective search space used: 888639167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.7 bits)