RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780575|ref|YP_003064988.1| hypothetical protein
CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
         (316 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 52/256 (20%), Positives = 82/256 (32%), Gaps = 97/256 (37%)

Query: 1   MGKGATKKEYS---KGLSKENASLPTMMG------TLF-----VFCAYILWGITPLYTQF 46
             +   KK  S   + + + NA L  + G        F     ++  Y       L    
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-----HVLVGDL 187

Query: 47  LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKA---VGMLVFSATILAV 103
           ++  +  E +S   L        A   F+ GL++L+  L+NP        L+ S  I   
Sbjct: 188 IKFSA--ETLSE--LIRTTLD--AEKVFTQGLNILE-WLENPSNTPDKDYLL-SIPI--- 236

Query: 104 HWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALL-----IILSL 158
                            S      P+I V         +L H  + A LL      + S 
Sbjct: 237 -----------------SC-----PLIGVI--------QLAHYVVTAKLLGFTPGELRSY 266

Query: 159 LI-MTLHS-GIPLLSLAIAV--TWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWN 214
           L   T HS G+ + ++AIA   +W +                F      AI  LF   + 
Sbjct: 267 LKGATGHSQGL-VTAVAIAETDSWES----------------FFVSVRKAITVLF---FI 306

Query: 215 GFSGGEHFFLGNIPDT 230
           G    E +     P+T
Sbjct: 307 GVRCYEAY-----PNT 317



 Score = 33.8 bits (77), Expect = 0.056
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 17/76 (22%)

Query: 39  IT-PLYTQFLEQVS--VLE-VISHRVLWSLPGVFFAI-VY--FSGGLSLLKDTLKNPKA- 90
           +  P ++  L   S  + + ++ + V +        I VY  F G      D L+     
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSF--NAKDIQIPVYDTFDG-----SD-LRVLSGS 474

Query: 91  -VGMLVFSATILAVHW 105
               +V     L V W
Sbjct: 475 ISERIVDCIIRLPVKW 490


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.2 bits (64), Expect = 1.4
 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 8/30 (26%)

Query: 252 KRA--KL-STVGIMEY---TAPLLMIVSSV 275
           K+A  KL +++ +  Y   +AP L I +++
Sbjct: 19  KQALKKLQASLKL--YADDSAPALAIKATM 46


>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid
           metabolism, alternative splicing, ATP-binding, biotin,
           fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens}
          Length = 760

 Score = 27.8 bits (61), Expect = 3.3
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 197 FIEMC-VLAIPALFYVVWNGFSGGEHFFLGNIP 228
            I+      +P + +  W GFSGG       + 
Sbjct: 449 AIKDFNREKLPLMIFANWRGFSGGMKDMYDQVL 481


>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance,
           transporter, homodimer, dual topology, transport
           protein; NMR {Escherichia coli}
          Length = 137

 Score = 27.4 bits (61), Expect = 4.1
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 9/100 (9%)

Query: 203 LAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGL---LNSFVFCIFSYGIKRAKLSTV 259
           L    L  V+          F    P    +I Y     L +        GI  A  S V
Sbjct: 7   LGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGV 66

Query: 260 GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVV 299
           GI      +L+ + S     Q +D    I   ++   +++
Sbjct: 67  GI------VLISLLSWGFFGQRLDLPAIIGMMLICAGVLI 100



 Score = 26.2 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 129 VISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS 165
           V+   L   F  +RL+   II  +LI   +LI+ L S
Sbjct: 69  VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.143    0.434 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,608,897
Number of extensions: 116709
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 24
Length of query: 316
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 224
Effective length of database: 3,462,782
Effective search space: 775663168
Effective search space used: 775663168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.2 bits)