RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62] (316 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.0 bits (114), Expect = 3e-06 Identities = 52/256 (20%), Positives = 82/256 (32%), Gaps = 97/256 (37%) Query: 1 MGKGATKKEYS---KGLSKENASLPTMMG------TLF-----VFCAYILWGITPLYTQF 46 + KK S + + + NA L + G F ++ Y L Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-----HVLVGDL 187 Query: 47 LEQVSVLEVISHRVLWSLPGVFFAIVYFSGGLSLLKDTLKNPKA---VGMLVFSATILAV 103 ++ + E +S L A F+ GL++L+ L+NP L+ S I Sbjct: 188 IKFSA--ETLSE--LIRTTLD--AEKVFTQGLNILE-WLENPSNTPDKDYLL-SIPI--- 236 Query: 104 HWGFFIYALLTRQGFLTSFSYFVTPVISVFLGSVFLKERLNHLQIIAALL-----IILSL 158 S P+I V +L H + A LL + S Sbjct: 237 -----------------SC-----PLIGVI--------QLAHYVVTAKLLGFTPGELRSY 266 Query: 159 LI-MTLHS-GIPLLSLAIAV--TWSAYCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWN 214 L T HS G+ + ++AIA +W + F AI LF + Sbjct: 267 LKGATGHSQGL-VTAVAIAETDSWES----------------FFVSVRKAITVLF---FI 306 Query: 215 GFSGGEHFFLGNIPDT 230 G E + P+T Sbjct: 307 GVRCYEAY-----PNT 317 Score = 33.8 bits (77), Expect = 0.056 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 17/76 (22%) Query: 39 IT-PLYTQFLEQVS--VLE-VISHRVLWSLPGVFFAI-VY--FSGGLSLLKDTLKNPKA- 90 + P ++ L S + + ++ + V + I VY F G D L+ Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSF--NAKDIQIPVYDTFDG-----SD-LRVLSGS 474 Query: 91 -VGMLVFSATILAVHW 105 +V L V W Sbjct: 475 ISERIVDCIIRLPVKW 490 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.2 bits (64), Expect = 1.4 Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 8/30 (26%) Query: 252 KRA--KL-STVGIMEY---TAPLLMIVSSV 275 K+A KL +++ + Y +AP L I +++ Sbjct: 19 KQALKKLQASLKL--YADDSAPALAIKATM 46 >3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} Length = 760 Score = 27.8 bits (61), Expect = 3.3 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%) Query: 197 FIEMC-VLAIPALFYVVWNGFSGGEHFFLGNIP 228 I+ +P + + W GFSGG + Sbjct: 449 AIKDFNREKLPLMIFANWRGFSGGMKDMYDQVL 481 >2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Length = 137 Score = 27.4 bits (61), Expect = 4.1 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 9/100 (9%) Query: 203 LAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGL---LNSFVFCIFSYGIKRAKLSTV 259 L L V+ F P +I Y L + GI A S V Sbjct: 7 LGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGV 66 Query: 260 GIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVV 299 GI +L+ + S Q +D I ++ +++ Sbjct: 67 GI------VLISLLSWGFFGQRLDLPAIIGMMLICAGVLI 100 Score = 26.2 bits (58), Expect = 9.5 Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 129 VISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHS 165 V+ L F +RL+ II +LI +LI+ L S Sbjct: 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.329 0.143 0.434 Gapped Lambda K H 0.267 0.0526 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,608,897 Number of extensions: 116709 Number of successful extensions: 292 Number of sequences better than 10.0: 1 Number of HSP's gapped: 290 Number of HSP's successfully gapped: 24 Length of query: 316 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 224 Effective length of database: 3,462,782 Effective search space: 775663168 Effective search space used: 775663168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 57 (26.2 bits)