BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780575|ref|YP_003064988.1| hypothetical protein
CLIBASIA_02310 [Candidatus Liberibacter asiaticus str. psy62]
         (316 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780575|ref|YP_003064988.1| hypothetical protein CLIBASIA_02310 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 316

 Score =  628 bits (1620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1   MGKGATKKEYSKGLSKENASLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRV 60
           MGKGATKKEYSKGLSKENASLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRV
Sbjct: 1   MGKGATKKEYSKGLSKENASLPTMMGTLFVFCAYILWGITPLYTQFLEQVSVLEVISHRV 60

Query: 61  LWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLT 120
           LWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLT
Sbjct: 61  LWSLPGVFFAIVYFSGGLSLLKDTLKNPKAVGMLVFSATILAVHWGFFIYALLTRQGFLT 120

Query: 121 SFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSA 180
           SFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSA
Sbjct: 121 SFSYFVTPVISVFLGSVFLKERLNHLQIIAALLIILSLLIMTLHSGIPLLSLAIAVTWSA 180

Query: 181 YCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLN 240
           YCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLN
Sbjct: 181 YCFARKTIPVGSSEGFFIEMCVLAIPALFYVVWNGFSGGEHFFLGNIPDTLFLIGYGLLN 240

Query: 241 SFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVY 300
           SFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVY
Sbjct: 241 SFVFCIFSYGIKRAKLSTVGIMEYTAPLLMIVSSVFILKQPIDTVRTIVFGIVVIAMVVY 300

Query: 301 LLPTVINSGKNKTKKS 316
           LLPTVINSGKNKTKKS
Sbjct: 301 LLPTVINSGKNKTKKS 316


>gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 234

 Score = 23.1 bits (48), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 2/27 (7%)

Query: 38 GITPLYTQFLEQVSVLEVISHRVLWSL 64
          G+TP +  FLE++S++ V  H+V+ +L
Sbjct: 44 GLTPRF--FLEELSIINVDWHKVVVTL 68


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.143    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,172
Number of Sequences: 1233
Number of extensions: 8047
Number of successful extensions: 22
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 316
length of database: 328,796
effective HSP length: 74
effective length of query: 242
effective length of database: 237,554
effective search space: 57488068
effective search space used: 57488068
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 38 (19.2 bits)