>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708

Score = 235 bits (602), Expect = 2e-62 Identities = 166/573 (28%), Positives = 288/573 (50%), Gaps = 51/573 (8%) Query: 38 VIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIR 97 VIA+ V L I + + +I+ K L I + LI +Y ++ I ++I+ Sbjct: 162 VIAAIIVTL-ISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAY----IIQQILSYIQ 216 Query: 98 DFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSS----------AISNGIRSI 147 FL +GQ + + + H+++L F + G++ S A+++ I S+ Sbjct: 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSL 276 Query: 148 EMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSK 207 + + I+V+ + L + FL +SI VI+ ++ Sbjct: 277 FLDMWILVI--VGLFLVRQNMLLFLL-----SLLSIPVYAVIIILFKR---------TFN 320 Query: 208 KMNNLLHECHA----KVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGW 263 K+N+ + +A + + L ETI+ SE ++++ Y + + Sbjct: 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA--- 377 Query: 264 LNFGQGLIFSIGMVITMII----SSHAVYIGEQTVGDFVFINTLLTQLAIPL-NI--LGT 316 + GQ I ++ +I ++ ++ V G+ T+G + N LL+ PL NI L Sbjct: 378 -DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQP 436 Query: 317 IYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGI 376 + +R + + E+ + +E I + +L NG IV N+VS+SY + + I I Sbjct: 437 KLQAARVANNRLNEVYLVDSEFINKKKRTELNNL---NGDIVINDVSYSYGYGSNILSDI 493 Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGII 436 S I + KT ++G SG GKST+AKLL + + G I ++G +K I + +LRQ I + Sbjct: 494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553 Query: 437 PQDTILFNDTLRYNILYGN-PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLS 495 PQ+ +F+ ++ N+L G N S E+ AA E+A++K I +P GY T + E G +S Sbjct: 554 PQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTI 555 GG+KQR+++ARA+L + ++I DE+TS+LD ITE+ I L L +++T + +AHRLS Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVA 672 Query: 556 TDADNIIVFDQGTVVESGSHENLISQGGIYTSM 588 +D IIV D G ++E GSH+ L+ + G Y S+ Sbjct: 673 KQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705

RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR01193