>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221

Score = 85.1 bits (211), Expect = 4e-17 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 20/211 (9%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT---KES 428 + KG+S I + A++G SG GKST+ LL L + G + +GQ + K++ + Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 Query: 429 LR-QTIGIIPQDTILFND-TLRYNI----LYGNPNASDQELCAAVEVAQLKSFIMKLPNG 482 LR + +G I Q L D T N+ L G + V+ A+ +++ M G Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS---------VKEAKERAYEMLEKVG 130 Query: 483 YDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN 542 + + R +LSGGE+QRV+IARA++ P +++ DE T +LD + I + L++ Sbjct: 131 LEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190 Query: 543 RTT--LVIAHRLSTITDADNIIVFDQGTVVE 571 T LV+ H L D ++ G + Sbjct: 191 LNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221

RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR02211