RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR01842
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544
Score = 162 bits (413), Expect = 2e-40
Identities = 84/263 (31%), Positives = 143/263 (54%), Gaps = 8/263 (3%)
Query: 321 SRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFE 379
+RQ++ + ELL + + L GH+ NV+ +GISF
Sbjct: 287 ARQAYKRLNELLANYPSRDP------AMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFR 340
Query: 380 IAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQD 439
+ + A+IG SG GKST+A+L+ ++ G + +DG D+K+ +E+ + IG +PQD
Sbjct: 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQD 400
Query: 440 TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEK 499
LF T+ NI NA +++ A ++A + I++LP+GYDTV+G G LSGG++
Sbjct: 401 VELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460
Query: 500 QRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR-TTLVIAHRLSTITDA 558
QR+++ARA+ +P +++ DE S+LD E+ + A+ L T +VI HR S +
Sbjct: 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV 520
Query: 559 DNIIVFDQGTVVESGSHENLISQ 581
D I+V G + G + ++++
Sbjct: 521 DKILVLQDGRIARFGERDEVLAK 543