RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544
 Score =  162 bits (413), Expect = 2e-40
 Identities = 84/263 (31%), Positives = 143/263 (54%), Gaps = 8/263 (3%)

Query: 321 SRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFE 379
           +RQ++  + ELL     +        +  L    GH+   NV+           +GISF 
Sbjct: 287 ARQAYKRLNELLANYPSRDP------AMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFR 340

Query: 380 IAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQD 439
           +   +  A+IG SG GKST+A+L+  ++    G + +DG D+K+  +E+  + IG +PQD
Sbjct: 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQD 400

Query: 440 TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEK 499
             LF  T+  NI     NA  +++  A ++A +   I++LP+GYDTV+G  G  LSGG++
Sbjct: 401 VELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460

Query: 500 QRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR-TTLVIAHRLSTITDA 558
           QR+++ARA+  +P +++ DE  S+LD   E+ +  A+  L     T +VI HR S +   
Sbjct: 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV 520

Query: 559 DNIIVFDQGTVVESGSHENLISQ 581
           D I+V   G +   G  + ++++
Sbjct: 521 DKILVLQDGRIARFGERDEVLAK 543