RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR01846
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694
Score = 274 bits (703), Expect = 4e-74
Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 2/368 (0%)
Query: 228 ETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAV 287
ETI+ +E NR ++ ++ Y ++ V LI + I + +H V
Sbjct: 328 ETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLV 387
Query: 288 YIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNS 347
G + G V N L ++ P+ L +++D +Q+ I +E L +ILN E ++A
Sbjct: 388 IGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GL 446
Query: 348 KDLKIKNGHIVFNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRL 406
L G I F N+ F Y + + ++ +I P + ++G SG GKST+ KLL RL
Sbjct: 447 AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506
Query: 407 YDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAA 466
Y + G + +DG D+ LR+ +G++ Q+ +LF+ ++R NI NP A + + A
Sbjct: 507 YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHA 566
Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
++A FI +LP GY+T VGE+G LSGG++QR++IARA++ NP I+IFDEATS+LD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626
Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYT 586
+E I + + + RT ++IAHRLST+ D IIV ++G + ESG HE L++ G+Y
Sbjct: 627 ESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686
Query: 587 SMWKKQCE 594
+W++Q
Sbjct: 687 RLWQQQSG 694