RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR02857

>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

 Score =  215 bits (550), Expect = 2e-56
 Identities = 124/446 (27%), Positives = 202/446 (45%), Gaps = 34/446 (7%)

Query: 134 GKLSSAISNGIRSIE-MIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYV 192
           G+L++    G+ +++    R +   ++  I+  AI  A     +  I   I+ +T  L  
Sbjct: 101 GELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADW--ISGLILLLTAPLIP 158

Query: 193 WFTIITSNWRV-GLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYK 251
            F I+   W     ++K    L        D L    T++ F   K +   + +   +Y+
Sbjct: 159 IFMILIG-WAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYR 217

Query: 252 ESAISVATSLGWLNFGQGLIF------SIGMVITMIISSHAVYIGEQTVG---DFV---F 299
           E  + V      + F    +       S+ +V        AVYIG + +    D     F
Sbjct: 218 ERTMRVLR----IAFLSSAVLELFATLSVALV--------AVYIGFRLLAGDLDLATGLF 265

Query: 300 INTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGH-IV 358
           +  L  +  +PL  LG  Y          E L  +L+    +        +       + 
Sbjct: 266 VLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KAPVTAAPAPSLE 322

Query: 359 FNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITID 417
           F+ +S +Y        + +SF + P ++ AL+G SG GKST+  LL    D   G I ++
Sbjct: 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382

Query: 418 GQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIM 477
           G  +     +S R  I  +PQ   LF  T+  NI    P+ASD E+  A+E A L  F+ 
Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVA 442

Query: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
            LP G DT++GE G  LSGG+ QR+++ARA L++ P+++ DE T+ LD  TE  +  AL 
Sbjct: 443 ALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502

Query: 538 TLSKNRTTLVIAHRLSTITDADNIIV 563
            L++ RT L++ HRL+    AD I+V
Sbjct: 503 ALAQGRTVLLVTHRLALAERADRIVV 528