RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 242 bits (621), Expect = 2e-64
Identities = 124/377 (32%), Positives = 200/377 (53%), Gaps = 23/377 (6%)
Query: 217 HAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISV----ATSLGWLNFGQGLIF 272
+A + ++L ETI+ N+E R E+ ++ S + + + F Q L+
Sbjct: 324 NAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLV- 382
Query: 273 SIGMVIT---MIISSHAVYIGEQTVGDFVFINTLLTQLAI-PLNILGTI---YRDSRQSF 325
S+ +V+ +I GE T+G + +L+ A+ PL L + Y+ ++ +
Sbjct: 383 SVAIVVVGVYLISD------GELTMGGLIAC-VMLSGRALAPLGQLAGLLTRYQQAKTAL 435
Query: 326 IEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSK 384
++EL+ + E+ E ++ L+ G I F NVSF+Y +S I P +
Sbjct: 436 QSLDELMQLPVERPEGTRFLHRPRLQ---GEIEFRNVSFAYPGQETPALDNVSLTIRPGE 492
Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFN 444
K A+IG G GKST+ KLL LY G + +DG DI++I LR+ IG +PQD LF
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY 552
Query: 445 DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
TLR NI G P A D+E+ A E+A + F+ + P+G D +GERG LSGG++Q V++
Sbjct: 553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL 612
Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF 564
ARA+L++PPI++ DE TS++D +E + L +T +++ HR S + D IIV
Sbjct: 613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVM 672
Query: 565 DQGTVVESGSHENLISQ 581
D G +V G + ++
Sbjct: 673 DNGRIVADGPKDQVLEA 689