RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR03375

>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
 Score =  242 bits (621), Expect = 2e-64
 Identities = 124/377 (32%), Positives = 200/377 (53%), Gaps = 23/377 (6%)

Query: 217 HAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISV----ATSLGWLNFGQGLIF 272
           +A + ++L   ETI+  N+E     R E+ ++    S +        +  +  F Q L+ 
Sbjct: 324 NAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLV- 382

Query: 273 SIGMVIT---MIISSHAVYIGEQTVGDFVFINTLLTQLAI-PLNILGTI---YRDSRQSF 325
           S+ +V+    +I        GE T+G  +    +L+  A+ PL  L  +   Y+ ++ + 
Sbjct: 383 SVAIVVVGVYLISD------GELTMGGLIAC-VMLSGRALAPLGQLAGLLTRYQQAKTAL 435

Query: 326 IEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSK 384
             ++EL+ +  E+ E    ++   L+   G I F NVSF+Y          +S  I P +
Sbjct: 436 QSLDELMQLPVERPEGTRFLHRPRLQ---GEIEFRNVSFAYPGQETPALDNVSLTIRPGE 492

Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFN 444
           K A+IG  G GKST+ KLL  LY    G + +DG DI++I    LR+ IG +PQD  LF 
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY 552

Query: 445 DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
            TLR NI  G P A D+E+  A E+A +  F+ + P+G D  +GERG  LSGG++Q V++
Sbjct: 553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL 612

Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF 564
           ARA+L++PPI++ DE TS++D  +E   +  L      +T +++ HR S +   D IIV 
Sbjct: 613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVM 672

Query: 565 DQGTVVESGSHENLISQ 581
           D G +V  G  + ++  
Sbjct: 673 DNGRIVADGPKDQVLEA 689