RPSBLAST alignment for GI: 254780576 and conserved domain: TIGR03796
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710
Score = 224 bits (574), Expect = 4e-59
Identities = 154/591 (26%), Positives = 271/591 (45%), Gaps = 46/591 (7%)
Query: 17 PYMWPANRWDLKVRIIGAMFSVIASKFVILG---IPFLLK-WVTESLIEQSTASKTTSYL 72
P + A L+ ++ ++A ++L IP + +V E L++ L
Sbjct: 139 PSLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLL 198
Query: 73 TIGIVILITSYGT-MRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKL-----SQR 126
+G+ L+ T +++ L I+ L V + + + H+ +L +QR
Sbjct: 199 GMGLTALLQGVLTWLQLYYLRRLQIK--LAVGMS--------ARFLWHILRLPVRFFAQR 248
Query: 127 FHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEF--AISMAFLWYSYGDIYVSIM 184
+ I++ ++ + + + L T L+ + A L Y + I
Sbjct: 249 H---------AGDIASRVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIG 299
Query: 185 AVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLE 244
+ V + S RV ++++ + L + ET++ E +R
Sbjct: 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWA 359
Query: 245 KYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLL 304
Y +K + + L L+ S+ + +++ V G+ T+G V +L+
Sbjct: 360 GYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLM 419
Query: 305 TQLAIPLNIL---GTIYRDSRQSFIEIEELLN----ILNEKIEIQNAVNSKDLKIKNGHI 357
+ P+N L G ++ ++++L L E+ E A + ++ G++
Sbjct: 420 SSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS-GYV 478
Query: 358 VFNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
N++F Y+ + + S + P ++ AL+G SG GKST+AKL+ LY G I
Sbjct: 479 ELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
DG ++I +E L ++ ++ QD LF T+R N+ +P D +L A + A + I
Sbjct: 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVI 598
Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
P GYD + E G LSGG++QR+ IARA+++NP I+I DEATS+LD TE+ I L
Sbjct: 599 TSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL 658
Query: 537 ATLSKNR--TTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIY 585
+ R T +++AHRLSTI D D IIV ++G VV+ G+HE L + GG Y
Sbjct: 659 ----RRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAY 705