RPSBLAST alignment for GI: 254780576 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 64.9 bits (158), Expect = 6e-11
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
I+ S+ ++G +G+GK+T K+L G++ D DI E T+ PQ
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKML-------AGVLKPDEGDI-----EIELDTVSYKPQ 68
Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498
+ ++L K+ I K P + ++ +LSGGE
Sbjct: 69 YIKADYEGTVRDLLSSITKDF-------YTHPYFKTEIAK-PLQIEQILDREVPELSGGE 120
Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA--TLSKNRTTLVIAHRLSTIT 556
QRV+IA + K+ I + DE ++ LD+ + + +T V+ H + I
Sbjct: 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180
Query: 557 D-ADNIIVFD 565
AD +IVF+
Sbjct: 181 YLADRLIVFE 190