RPSBLAST alignment for GI: 254780576 and conserved domain: cd03270

>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226
 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 53/235 (22%)

Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVA-KLLY----RLYD------IKGGIITID 417
           HN   K +  +I  +K   + G SG GKS++A   +Y    R Y        +  +  +D
Sbjct: 9   HN--LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMD 66

Query: 418 GQDIKKI-------------TKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELC 464
             D+  I             T  + R T+G + +      D LR  +L+           
Sbjct: 67  KPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTE----IYDYLR--LLF----------- 109

Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN--PPIIIFDEATS 522
           A V + +   F++ +  GY T+       LSGGE QR+ +A  I       + + DE + 
Sbjct: 110 ARVGIRERLGFLVDVGLGYLTLSRSAP-TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 168

Query: 523 SLDIITERHIQTALATLSKNR----TTLVIAHRLSTITDADNIIVFDQGTVVESG 573
            L     R     + TL + R    T LV+ H   TI  AD++I    G  V  G
Sbjct: 169 GLH---PRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGG 220