RPSBLAST alignment for GI: 254780576 and conserved domain: cd03271

>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261
 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 48/240 (20%)

Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKST---------VAKLLYRLYDIKGGIITID 417
             +N   K I  +I     T + G SG GKS+         +A+ L+   +  G    I+
Sbjct: 7   RENN--LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIE 64

Query: 418 G-QDIKKITKESLRQTIGIIPQ----------DTI--LFNDTL---RYN-----ILYGNP 456
           G + I K+     +  IG  P+          D I  LF +     RYN     + Y   
Sbjct: 65  GLEHIDKVIVID-QSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGK 123

Query: 457 NASD---QELCAAVE-------VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIAR 506
           + +D     +  A+E       +A+    +  +  GY  + G+    LSGGE QR+ +A+
Sbjct: 124 SIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKL-GQPATTLSGGEAQRIKLAK 182

Query: 507 AILK---NPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNII 562
            + K      + I DE T+ L     + +   L  L  K  T +VI H L  I  AD II
Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242