RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] (597 letters) >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 535 bits (1380), Expect = e-152 Identities = 250/497 (50%), Positives = 343/497 (69%), Gaps = 1/497 (0%) Query: 96 IRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIV 155 +RD L+ +GQ A L + H++ LS RFH+ + G LS AI G + IE I+R I+ Sbjct: 1 LRDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWIL 60 Query: 156 VHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHE 215 +++PT++E ++ LW YG + VTVILY+ FT+I S+WR + MNN + Sbjct: 61 FNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSD 120 Query: 216 CHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIG 275 +AK D+L+NFET++YF +E++E R + + Y+++AI V SL LNFGQ IFS G Sbjct: 121 ANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTG 180 Query: 276 MVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNIL 335 + + M +S+ V G+ TVGD V +N LL QL+IPLN LG YR+ RQ+ ++E++ ++L Sbjct: 181 LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 Query: 336 NEKIEIQNAVNSKDLKI-KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGV 394 + + E+ +A ++ L + G + F NVSF+Y+ I GISF I K A++GESG Sbjct: 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGA 300 Query: 395 GKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYG 454 GKST+ +LL+R YD+ G ITIDGQDI+ +T++SLR+ IGI+PQDT+LFNDT+ YNI YG Sbjct: 301 GKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360 Query: 455 NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPI 514 P+A+ +E+ AA E AQ+ FI LP GYDT VGERGLKLSGGEKQRV+IAR ILKNPPI Sbjct: 361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI 420 Query: 515 IIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574 +I DEATS+LD TE+ IQ AL +S RTTLVIAHRLSTI DAD IIV D G +VE G+ Sbjct: 421 LILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 Query: 575 HENLISQGGIYTSMWKK 591 HE L++ GG+Y MW++ Sbjct: 481 HEELLAAGGLYAEMWRR 497 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 497 bits (1281), Expect = e-141 Identities = 235/584 (40%), Positives = 366/584 (62%), Gaps = 6/584 (1%) Query: 10 RTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69 R L+ + PY+WP L++R++ +F +I + + + +P L KW+ + L TA T Sbjct: 196 RKLRTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDEL----TAPDTF 251 Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129 Y + + + + + N++R FL++ + Q T + ++ H++ LS R+H+ Sbjct: 252 QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL 311 Query: 130 NYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVI 189 N + G++ + G S+ ++ +V + PT+L+ ++M + + + + I+ + ++ Sbjct: 312 NRRTGEVLRVMDRGTSSVTLL-EYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMML 370 Query: 190 LYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISK 249 LY + TI + WR +KMNN +E A+ D+L+NFET++Y+N+E +E+ R + I K Sbjct: 371 LYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK 430 Query: 250 YKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAI 309 Y++ SL +LN Q I +G++ ++ ++ V TVGDFV T L QL + Sbjct: 431 YQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYM 490 Query: 310 PLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHH 369 PLN GT YR +++FI++E + ++L E+ E+ + + LK+ G I F+NV+F+Y+ Sbjct: 491 PLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG 550 Query: 370 NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429 + ISF + P K AL+G SG GKST+ +LL+R +D+ G ITIDGQDI+ +T+ SL Sbjct: 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 Query: 430 RQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489 R +IG++PQDT+LFNDT+ YNI Y P+AS++E+ AA + AQ+ I++ P GY+T VGE Sbjct: 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549 RGLKLSGGEKQRV+IAR ILK P II+ DEATS+LD TER IQ ALA L NRTT+V+A Sbjct: 671 RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVA 730 Query: 550 HRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTSMWKKQ 592 HRLSTI +AD I+V G +VE G HE L+ + GG Y MW+ Q Sbjct: 731 HRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 478 bits (1231), Expect = e-135 Identities = 227/581 (39%), Positives = 355/581 (61%), Gaps = 7/581 (1%) Query: 12 LKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSY 71 L+ L Y WP +R L+ R+ A+ ++ +K + + +PF+ K + + L + Sbjct: 13 LRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGL----NDADGNPA 68 Query: 72 LTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINY 131 + I L+ YG R+ + + N +R+F++ ++ Q V H+ L F ++ Sbjct: 69 VLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR 128 Query: 132 KVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILY 191 G L+ I G R+I ++ +V ++IPT+ E A+ L+Y +G + I TV Y Sbjct: 129 GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAY 188 Query: 192 VWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYK 251 FTI+ + WR K MNN + + +D+LIN+E ++ FN+E++E +R + + Y+ Sbjct: 189 AAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYE 248 Query: 252 ESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPL 311 + + ++SL +LNFGQ IFS+ + M++ S+ + G+ TVGD V +N+LL QL++PL Sbjct: 249 RAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPL 308 Query: 312 NILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNC 371 N LG++YR+ RQ+ ++ L +L +IQ A + +++ G I F++V FSY Sbjct: 309 NFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGPKRK 366 Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431 + KG+SF I +K A++G +G GKST+ +LL R +D G I+ IDGQDIK+++ ESLRQ Sbjct: 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSIL-IDGQDIKEVSLESLRQ 425 Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491 +IG++PQD++LFNDT+ YNI YGNP+ASD+E+ A + A L I +LP+GY T+VGERG Sbjct: 426 SIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERG 485 Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHR 551 L LSGGEKQRVS+ARA LK+ PI++ DEATS+LD TER I + + RT ++I HR Sbjct: 486 LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR 545 Query: 552 LSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592 L + D D IIV D GTV E G+H L++ +Y +W Q Sbjct: 546 LDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQ 586 >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 376 bits (966), Expect = e-104 Identities = 195/584 (33%), Positives = 320/584 (54%), Gaps = 20/584 (3%) Query: 9 LRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKT 68 L L++L Y+ ++ A+ ++ S + L +P L+ + ++L+ Sbjct: 1 LSLLRRLLKYLKYK-------LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGE--- 50 Query: 69 TSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFH 128 ++ L+ + ++ + ++ +L +GQ L + + +L F Sbjct: 51 -------LLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFF 103 Query: 129 INYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTV 188 K G L S ++N + ++ ++ ++V + +IL S+ L+ + I+ + + Sbjct: 104 DKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL-ALILLLIL 162 Query: 189 ILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYIS 248 L + + LS+++ L E +A++ ++L I+ F +E E+ R E+ Sbjct: 163 PLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANE 222 Query: 249 KYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLA 308 + + + + + L L+ S+G V+ + + V G TVG L +L Sbjct: 223 ELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLL 282 Query: 309 IPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNH 368 P+ LG + +++ E L +L+E+ E+++ + K G I F NVSFSY Sbjct: 283 TPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPL--KDTIGSIEFENVSFSYPG 340 Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428 + K ISF I P +K A++G SG GKST+ KLL RLYD G I IDG DI+ I+ +S Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 Query: 429 LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488 LR+ IGI+ QD +LF+ T+R NI G P+A+D+E+ A+++A FI LP+GYDT+VG Sbjct: 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460 Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548 ERG+ LSGG++QR++IARA+L+NPPI+I DEATS+LD TE IQ AL L K RTTL+I Sbjct: 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 Query: 549 AHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592 AHRLSTI +AD IIV D G +VE G+HE L+++GG+Y +++ Q Sbjct: 521 AHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 360 bits (926), Expect = e-100 Identities = 141/236 (59%), Positives = 183/236 (77%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I F NV+F+Y+ + K +SF I KK A++G SG GKST+ +LL+R YD+ G I I Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476 DGQDI+++T +SLR+ IG++PQDT+LFNDT+ YNI YG P+A+D+E+ A + AQ+ I Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120 Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536 M+ P+GYDT+VGERGLKLSGGEKQRV+IARAILKNPPI++ DEATS+LD TER IQ AL Sbjct: 121 MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180 Query: 537 ATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592 +SK RTT+VIAHRLSTI +AD IIV G +VE G+HE L+++GG+Y MWK Q Sbjct: 181 RDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 343 bits (882), Expect = 7e-95 Identities = 180/592 (30%), Positives = 293/592 (49%), Gaps = 32/592 (5%) Query: 10 RTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69 L P ++ R +V + + ++A L P + V + ++ + T Sbjct: 140 FGLSWFIPLLFKYRRLLFEVLLASLLLQLLA-----LATPLFSQIVIDKVL-PDASRSTL 193 Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129 + L IG+++ + + +R +L +G+ L + H+ +L + Sbjct: 194 TVLAIGLLLAA-------LFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246 Query: 130 NYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFL----WYSYGDIYVSIMA 185 VG++ S + R +E I + ++ I++ ++ FL YS+ + + Sbjct: 247 KRSVGEIISRV----RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVL-- 300 Query: 186 VTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINF----ETIQYFNSEKFEIN 241 + L V T+I L ++ L E A+ L+ ET++ +E + Sbjct: 301 AAIPLNVLITLIFQP----LLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRS 356 Query: 242 RLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFIN 301 + + ++K LN + L+ + V+ + + V GE T+G V N Sbjct: 357 QWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFN 416 Query: 302 TLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNN 361 L P+ L ++ D +Q+ + +E L +IL+ E + L G I F N Sbjct: 417 MLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFEN 476 Query: 362 VSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420 VSF Y + + +S EI P +K A++G SG GKST+ KLL LY + G I +DG D Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 Query: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480 + I SLR+ +G + QD LF+ ++R NI GNP A+D+E+ A ++A FI LP Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596 Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540 GYDT VGE G LSGG++QR+++ARA+L P I++ DEATS+LD TE I L + Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656 Query: 541 KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592 + RT ++IAHRLSTI AD IIV DQG +VE GSHE L++QGG+Y ++++Q Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 334 bits (857), Expect = 6e-92 Identities = 174/590 (29%), Positives = 298/590 (50%), Gaps = 19/590 (3%) Query: 7 PSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTAS 66 P+ LK+L + P +W ++ A ++ S + + IP+ L + +++ E ++ Sbjct: 130 PNHTLLKRLLGLLKPEWKW-----LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSA 184 Query: 67 KTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQR 126 ++ L ++ ++N IR L G+ L + + + Sbjct: 185 DALKRACTILLGLF-------LIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIA 237 Query: 127 FHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAF-LWYSYGDIYVSIMA 185 F K G+L S +++ + + + + + +++ + F S+ V+++ Sbjct: 238 FFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIV 297 Query: 186 VTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEK 245 V ++ V I + LSK+ + L + + L T++ F +E+ E+ R K Sbjct: 298 VPIVALV--AKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNK 355 Query: 246 YISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLT 305 + + + + A + G L+ ++ ++ + H V G T G Sbjct: 356 KLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQV 415 Query: 306 QLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFS 365 QL L+ L + Y + + E + +++ K I ++ G I F +VSF+ Sbjct: 416 QLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQ-GVIEFEDVSFA 474 Query: 366 Y--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423 Y + K +SF I P + AL+G SG GKST+A LL R YD G I +DG I Sbjct: 475 YPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534 Query: 424 ITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGY 483 I + LR+ IG++ Q+ +LF+ ++R NI YG NA+D+E+ AA ++A FI P+GY Sbjct: 535 INHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGY 594 Query: 484 DTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR 543 +TVVGE+G +LSGG+KQR++IARA+L+NP ++I DEATS+LD +E +Q AL L + R Sbjct: 595 NTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGR 654 Query: 544 TTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS-QGGIYTSMWKKQ 592 T LVIAHRLST+ AD I+V D+G VVE G+H+ L+S G+Y + ++Q Sbjct: 655 TVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQ 704 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 327 bits (840), Expect = 5e-90 Identities = 172/591 (29%), Positives = 288/591 (48%), Gaps = 25/591 (4%) Query: 11 TLKKLWPYMWPANRWDLKVRIIGAMFSVIA-SKFVILGIPFLLKWVTESLIEQSTASKTT 69 + +++ P + ++G++ + I + + + + V E+ Sbjct: 651 SFWRIFKLNKP----EWPYLLLGSLGAAIRGATYPLFAY--VFSQVLEAFYPPD--DDEL 702 Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129 ++ G +V+ I+N ++ + + G+ T L + + + + Sbjct: 703 KREVRAWALIFLGLG---IVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFD 759 Query: 130 NYK-VGKLSSAISNGIRSIEMII--RIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAV 186 + + G LSS ++ ++ + R+ +V + I +AF+ YG ++ Sbjct: 760 DPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI---YGWRLALVVLA 816 Query: 187 TVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKY 246 T L + + + G SK E + + N T+ +E+ + ++ Sbjct: 817 TFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEE 876 Query: 247 ISKYKESAI--SVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLL 304 + K ++S+ + + LG F Q L+F + ++ + + GE T D + L Sbjct: 877 LEKPRKSSFKRGLISGLG-FGFSQSLLFFV-YALSFWYGARLISNGEMTFEDVFRVFMAL 934 Query: 305 TQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLK-IKNGHIVFNNVS 363 + A+ L + D ++ I + IL+ K I S G I F NVS Sbjct: 935 SFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVS 994 Query: 364 FSY--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI 421 F+Y + +S I + AL+G SG GKSTV LL R YD G + IDG DI Sbjct: 995 FAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI 1054 Query: 422 KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481 K + + LR+ IG++ Q+ +LFN T+R NI YG+ S++E+ A ++A +FI LP Sbjct: 1055 KDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQ 1114 Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541 GYDT VGERG++LSGG+KQR++IARAIL+NP I++ DEATS+LD +ER +Q AL + Sbjct: 1115 GYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME 1174 Query: 542 NRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592 RTT+VIAHRLSTI +AD I V G VVE G+H+ L+++ GIY + + Q Sbjct: 1175 GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQ 1225 Score = 305 bits (784), Expect = 2e-83 Identities = 186/587 (31%), Positives = 299/587 (50%), Gaps = 36/587 (6%) Query: 22 ANRWDLKVRIIGAMFSVIASKFVILGIPFLL---KWVTESLIEQSTASKTTSYLTIGIVI 78 A+R+D + I+G++ ++ LG+P + +T+ L + + + V Sbjct: 22 ADRFDYLLMILGSIGAIAHG----LGLPLMSIIFGKLTDVLG---DNTNKIASSEVSKVA 74 Query: 79 LITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSS 138 L Y + V IS I+ ++ G+ T + + + + + + G+L + Sbjct: 75 LYFVY--LGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVT 132 Query: 139 AISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIIT 198 +S+ I I+ I V + I + F + + YG +M + L + Sbjct: 133 RLSDDIELIQDAIGEKVGNFIQLLATFIAGFV-IGFYYGWKLTLVMLSFIPLIAIAGGLL 191 Query: 199 SNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAI--- 255 + + L++K + + + + + T+ FN EK EI R K + + I Sbjct: 192 ARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKG 251 Query: 256 -SVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGD--FVFINTL-----LTQL 307 LG+ F L+F+ + S + G GD VF + L L Q Sbjct: 252 LFKGLGLGFTFF---LLFAS-YALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 Query: 308 AIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY- 366 + L+ +R + I E ++ I+ + IK G I F NV FSY Sbjct: 308 SPHLSAFAK----ARAAAYRIFETIDR-KPSIDPYSKGGRVLSSIK-GEIEFRNVCFSYP 361 Query: 367 -NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT 425 I KG+S +I + AL+G SG GKST+ +LL R YD G + IDG+DI+ + Sbjct: 362 SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLN 421 Query: 426 KESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDT 485 + LR IG++ Q+ +LF T+R NI YG P+A+ +E+ A + A FI+KLP+GYDT Sbjct: 422 LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481 Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT 545 +VGERG++LSGG+KQR++IARA+++NP I++ DEATS+LD +ER +Q AL SK RTT Sbjct: 482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTT 541 Query: 546 LVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592 +V+AHRLSTI +AD I V ++G +VE G+H+ LI+ GGIY+S+ + Q Sbjct: 542 IVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQ 588 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 308 bits (790), Expect = 3e-84 Identities = 122/234 (52%), Positives = 163/234 (69%), Gaps = 1/234 (0%) Query: 357 IVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415 + F NV+F Y + + IS +I + AL+G SG GKST+ L+ R YD+ G I Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60 Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475 IDG D++ T SLR+ IG++ QD LFNDT+ NI YG P A+ +E+ A A F Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120 Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535 IM+LP GYDTV+GERG+KLSGG++QR++IARA+LK+PPI+I DEATS+LD +ER +Q A Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180 Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMW 589 L L KNRTT VIAHRLSTI +AD I+V + G +VE G+HE L++QGG+Y + Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 297 bits (763), Expect = 5e-81 Identities = 122/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 357 IVFNNVSFSY--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414 I F NVSF Y I KG+S I P K AL+G SG GKSTV LL R YD G I Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60 Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474 +DG DI+ + LR IG++ Q+ +LF+ T+ NI YG P+A+D+E+ A + A + Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120 Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534 FIM LP+GYDT+VGERG +LSGG+KQR++IARA+L+NP I++ DEATS+LD +E+ +Q Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180 Query: 535 ALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592 AL K RTT+VIAHRLSTI +AD I V G VVE G+H+ L++Q G+Y + K Q Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 283 bits (725), Expect = 1e-76 Identities = 116/229 (50%), Positives = 162/229 (70%) Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414 G I F NV+FSY+ + K I+F I P + A++G +G GK+T+ LL R YD + G I Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60 Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474 IDG DI+ I+++SLR IG++ QDT LF+ T+ NI G PNA+D+E+ A + A Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120 Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534 FIMKLPNGYDTV+GE G LS GE+Q ++IARA+L++P I+I DEATS++D TE+ IQ Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180 Query: 535 ALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGG 583 AL L K RT+++IAHRLSTI +AD I+V D G ++E G+H+ L+++ G Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 262 bits (670), Expect = 3e-70 Identities = 160/568 (28%), Positives = 263/568 (46%), Gaps = 21/568 (3%) Query: 31 IIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVN 90 +I A+ +V++ I+ LL + LIE L + ++ L V+ Sbjct: 3 VISALLAVLSG-IAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIAL--------VLR 53 Query: 91 LISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMI 150 +R+ L +L V+ + KL F G ++ GI +E Sbjct: 54 AFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPY 113 Query: 151 I-RIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKM 209 R + + I+ I +A ++++ I+ +T L F I+ S+K Sbjct: 114 YARYLPQMFLSAIVPLLILIAIFFFNWAAAL--ILLITAPLIPLFMILVGLAAKDASEKQ 171 Query: 210 NNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVAT----SLGWLN 265 + L D L ET++ F + R+ K ++++ +SV S L Sbjct: 172 FSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLE 231 Query: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSF 325 F L SI +V I G+ T+ +F+ L + PL LG+ + + Sbjct: 232 FFAYL--SIALVAVYIGFRLLGE-GDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGE 288 Query: 326 IEIEELLNILNEKIEIQNAVNSKDLKIKNG-HIVFNNVSFSYNHHNCIFKGISFEIAPSK 384 ++L +L + + ++ + I N+SF Y ++ I + Sbjct: 289 AAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQ 348 Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFN 444 TAL+G SG GKST+ LL G I ++G D++ ++ E+ R+ I + Q+ LF Sbjct: 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408 Query: 445 DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504 T+R NIL P+ASD+E+ AA++ A L F+ K P+G DTV+GE G LSGG+ QR+++ Sbjct: 409 GTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLAL 467 Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF 564 ARA+L +++ DE T+ LD TE+ I AL L+K +T LVI HRL DAD I+V Sbjct: 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVL 527 Query: 565 DQGTVVESGSHENLISQGGIYTSMWKKQ 592 D G +VE G+HE L + G+Y ++ K+Q Sbjct: 528 DNGRLVEQGTHEELSEKQGLYANLLKQQ 555 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 239 bits (611), Expect = 2e-63 Identities = 156/608 (25%), Positives = 271/608 (44%), Gaps = 54/608 (8%) Query: 11 TLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTS 70 + Y+ A + L + I+ + V+ I +L W + +T T+ Sbjct: 802 SWSVYKKYIKAAGGFLLVLLIL--LLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSF 859 Query: 71 YLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHIN 130 YL + Y + V + + +R FL+ + G A+ L+ ++++ + + F Sbjct: 860 YLGV--------YALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT 911 Query: 131 YKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVIL 190 G++ + S I ++++ L+P LEF + + I+ V + Sbjct: 912 TPTGRILNRFSKDIDTVDV--------LLPFTLEFFLQSLLN-------VLGILVVISYV 956 Query: 191 YVWFTIITS----------NWRVGLSKKMNNLLHECHAKVF----DTLINFETIQYFNSE 236 WF I + + S+++ L + ++ +TL TI+ F E Sbjct: 957 TPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKE 1016 Query: 237 KFEINRLEKYISKYKESAISVATSLGWLNFGQGLI--FSIGMVITMIISSHAVYIGEQTV 294 + I ++ I + + ++ WL L+ + + + + I V Sbjct: 1017 ERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLV 1076 Query: 295 GDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIE-IQNAVNSKDLKI- 352 G + QL L L + + + +E +L + E S+ Sbjct: 1077 G---LSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSW 1133 Query: 353 -KNGHIVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410 G I F ++S Y + + KGISF I P +K ++G +G GKS++ L+RL + Sbjct: 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA 1193 Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVE 468 G I IDG DI KI LR + IIPQD +LF+ T+R+N+ +P SD E+ A+E Sbjct: 1194 EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL---DPFDEYSDDEIWEALE 1250 Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528 QLK + LP G D+ V E G S G++Q + +ARA+L+ I++ DEAT+S+D T Sbjct: 1251 RCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 Query: 529 ERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTS 587 + IQ + K+ T L IAHRL+T+ D+D ++V D G VVE S L+S +++S Sbjct: 1311 DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSS 1370 Query: 588 MWKKQCES 595 + K+ S Sbjct: 1371 LLKEAALS 1378 Score = 160 bits (405), Expect = 1e-39 Identities = 126/572 (22%), Positives = 252/572 (44%), Gaps = 50/572 (8%) Query: 28 KVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMR 87 + ++ +F + +G L K LI + + + +L+ Sbjct: 201 RTFLLSGIFLFLRDLAGFVGPLLLKK-----LILFFSEKRLPLNNGYLLAVLL---FLAS 252 Query: 88 VVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSI 147 ++ + H F+ +G L + +LS VG++ + +S + + Sbjct: 253 LLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRL 312 Query: 148 EMIIRIIVVHLIPTI-LEFAISMAFLWYSYGDIYVSIMAVTVI---LYVWFTIITSNWRV 203 +HL+ + L+ +++ L+ G ++ +AV V+ L + + ++ Sbjct: 313 SDAA--CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQK 370 Query: 204 GLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLE----KYISKYKESAISVAT 259 L K+ + + + + L + I+ + EK + ++E K + ++SA A Sbjct: 371 RLMKRKDERI----KLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSAL 426 Query: 260 SLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFIN-TLLTQLAIPLNILGTIY 318 + F + V+T ++ + +G F + L L PL +L ++ Sbjct: 427 NSFLNFF----SPVLVSVVTFVV--FVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVI 480 Query: 319 RDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHN--CIFKGI 376 Q+ + ++ L L + ++V + I N SFS++ + K I Sbjct: 481 SQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDI 540 Query: 377 SFEIAPSKKTALIGESGVGKST-VAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGI 435 +FEI + A++G G GKS+ ++ +L + + G + ++ ++ Sbjct: 541 NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV--------------AVNGSVAY 586 Query: 436 IPQDTILFNDTLRYNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTVVGERGLKL 494 +PQ + N T+R NIL+G+P D+E V + LK + LP G T +GERG+ L Sbjct: 587 VPQQPWIQNGTVRENILFGSP--YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINL 644 Query: 495 SGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRLS 553 SGG+KQR+S+ARA+ ++ I + D+ S++D +HI + + L + +T +++ H+L Sbjct: 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ 704 Query: 554 TITDADNIIVFDQGTVVESGSHENLISQGGIY 585 + AD IIV G +VESG++E L+ GG + Sbjct: 705 FLPHADQIIVLKDGKIVESGTYEELLKSGGDF 736 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 237 bits (606), Expect = 6e-63 Identities = 145/598 (24%), Positives = 273/598 (45%), Gaps = 50/598 (8%) Query: 12 LKKLWPYMWP--ANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69 ++ L PY+ +++ L + I+ A+ +++AS +G+ L W + + A Sbjct: 1 MRALLPYLRLYKRHKFGLLLGIVLAILTLLAS----IGLLTLSGWF---ISASAIAGLAY 53 Query: 70 SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVE--IGQGATCTLYHQVVSHVYKLSQRF 127 + + + +R YVE + AT V+S + R Sbjct: 54 IFNVMLPSAGVRGLAILRTAAR---------YVERLVSHDATFR----VLSAL-----RV 95 Query: 128 HINYKVGKLSSAISNGIRSIEMIIRII-------------VVHLIPTILEFAISMAFLWY 174 + K+ LS A+ RS +++ R++ + + ++ A+ L Sbjct: 96 RLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGL-- 153 Query: 175 SYGDIYVSIMAVTVILYVWFTIITSNWRVG--LSKKMNNLLHECHAKVFDTLINFETIQY 232 S+ I ++++ ++L + I T +R G + ++ D + + Sbjct: 154 SFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLI 213 Query: 233 FNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQ 292 F +E LE + + ++ A G + LI + ++ ++ + V G Sbjct: 214 FGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGAL 273 Query: 293 T-VGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLK 351 G + + + L + ++ Q L +IL++K E+ + Sbjct: 274 AQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV--TFPDEQTA 331 Query: 352 IKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410 + NVSF+Y K + +A +K A++G SG GKST+ +LL +D + Sbjct: 332 TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470 G IT++G +I + +++LR+TI ++ Q LF+ TLR N+ NP+ASD+EL AA++ Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451 Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530 L+ + P+G +T +GE G +LSGGE++R+++ARA+L + P+ + DE T LD ITER Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 Query: 531 HIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSM 588 + L ++ +T L++ HRL + D IIV D G ++E G+H L++ G Y + Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRL 569 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 233 bits (596), Expect = 8e-62 Identities = 99/237 (41%), Positives = 151/237 (63%), Gaps = 1/237 (0%) Query: 357 IVFNNVSFSYNHHN-CIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415 I F +V F Y I IS I P + ++G SG GKST+ KL+ R Y + G + Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475 +DG D+ LR+ +G++ Q+ +LFN ++R NI +P S + + A ++A F Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120 Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535 I +LP GYDT+VGE+G LSGG++QR++IARA++ NP I+IFDEATS+LD +E I Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180 Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592 + + RT ++IAHRLST+ +AD IIV ++G +VE GSH+ L+++ G+Y +++ Q Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 231 bits (591), Expect = 4e-61 Identities = 101/223 (45%), Positives = 136/223 (60%), Gaps = 6/223 (2%) Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 G I F NVS Y + + K ISF I P +K ++G +G GKS++ L+RL ++ G Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60 Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPN--ASDQELCAAVEVAQ 471 I IDG DI KI LR I IIPQD +LF+ T+R N+ +P SD+EL A+E Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVG 117 Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531 LK F+ LP G DTVV E G LS G++Q + +ARA+L+ I++ DEAT+S+D T+ Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177 Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574 IQ + K+ T L IAHRL TI D+D I+V D+G VVE S Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 220 bits (563), Expect = 6e-58 Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 1/220 (0%) Query: 355 GHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 G I F NVSFSY N +S I +K A+IG G GKST+ KLL LY G Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60 Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473 + +DG DI+++ LR+ IG +PQD LF TLR NI G P A D+ + A E+A + Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120 Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533 F+ K PNG D +GERG LSGG++Q V++ARA+L +PPI++ DE TS++D+ +E ++ Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180 Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573 L L ++T ++I HR S + D IIV D G +V G Sbjct: 181 ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 216 bits (552), Expect = 1e-56 Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 2/217 (0%) Query: 355 GHIVFNNVSFSYNH--HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412 G + F NV+F+Y + + +SF + P + TAL+G SG GKSTV LL Y +GG Sbjct: 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69 Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472 + +DG+ I + + L + ++ Q+ +LF +L+ NI YG + S + + A + A Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129 Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532 SFI +L +GYDT VGE+G +LSGG+KQRV+IARA+++NP ++I DEATS+LD +E+ + Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189 Query: 533 QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTV 569 Q AL + RT LVIAHRLST+ AD I+V D G + Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 214 bits (547), Expect = 6e-56 Identities = 95/212 (44%), Positives = 120/212 (56%), Gaps = 43/212 (20%) Query: 357 IVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415 I F NVSFSY + K +S I P +K A++G SG GKST+ KLL RLYD G I Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475 IDG D++ + ESLR+ I +PQD LF+ T+R NI Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96 Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535 LSGG++QR++IARA+L++PPI+I DEATS+LD TE I A Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138 Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQG 567 L L+K +T +VIAHRLSTI DAD IIV D G Sbjct: 139 LRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170 >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 167 bits (425), Expect = 6e-42 Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 8/264 (3%) Query: 320 DSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISF 378 +RQS+ + ELL L E L G + ++ + I KGISF Sbjct: 304 AARQSYKRLNELLAELPAAAE------RMPLPAPQGALSVERLTAAPPGQKKPILKGISF 357 Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438 + + +IG SG GKST+A+LL ++ G + +DG D+++ +E L + IG +PQ Sbjct: 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417 Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498 D LF+ T+ NI A +++ A +A + I++LP GYDT +GE G LSGG+ Sbjct: 418 DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477 Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIAHRLSTITD 557 +QR+++ARA+ +P +++ DE S+LD E + A+ ++ T +VIAHR S + Sbjct: 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 Query: 558 ADNIIVFDQGTVVESGSHENLISQ 581 D I+V G + G E ++++ Sbjct: 538 VDKILVLQDGRIAAFGPREEVLAK 561 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 165 bits (419), Expect = 3e-41 Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 20/223 (8%) Query: 353 KNGHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411 ++G I N+S Y + K +SF++ +K ++G +G GKST+ L+R + + Sbjct: 3 EHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62 Query: 412 GIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQ 471 G I IDG DI I E LR ++ IIPQD LF+ T+R N+ + SD+E+ A+ V+ Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALRVS- 120 Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531 E GL LS G++Q + +ARA+LK P +++ DEAT+S+D T+ Sbjct: 121 -----------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163 Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574 IQ + N T L IAHRL TI D D I+V D G V E Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 >gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 257 Score = 162 bits (412), Expect = 2e-40 Identities = 92/236 (38%), Positives = 142/236 (60%), Gaps = 3/236 (1%) Query: 355 GHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 G I +++ Y N+ + K + I P +K + G +G GKS+++ +R+ DI G Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77 Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473 I IDG DI K+ +LR + II QD ILF+ ++R+N L +D L A+E+AQLK Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIAQLK 136 Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533 + + LP G D VV E G S G++Q +ARA ++ I+I DEAT+S+D+ TE +Q Sbjct: 137 NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196 Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTSM 588 + T +RT + IAHR+STI DAD ++V +G +VE + ENL++Q G++ S+ Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 148 bits (375), Expect = 5e-36 Identities = 70/215 (32%), Positives = 101/215 (46%), Gaps = 44/215 (20%) Query: 357 IVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415 + NVSF Y + + +SF I P + A+IG SG GKST+A+L+ L G + Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475 +DG DI + L +G +PQD LF+ ++ NIL Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL----------------------- 97 Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535 SGG++QR+ +ARA+ NP I++ DE S LD+ ER + A Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138 Query: 536 LATLSKNRTT-LVIAHRLSTITDADNIIVFDQGTV 569 +A L T +VIAHR T+ AD I+V + G V Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 148 bits (374), Expect = 6e-36 Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 41/218 (18%) Query: 357 IVFNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415 + NNVSFSY + K +S E+ +K AL+G SG GKST+ +LL + G IT Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475 +DG + + +++L I ++ Q LF+ TLR N+ Sbjct: 61 LDGVPVSDL-EKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95 Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535 G + SGGE+QR+++AR +L++ PI++ DE T LD ITER + + Sbjct: 96 ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140 Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573 + + K++T + I H L+ I D I+ + G ++ G Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 142 bits (361), Expect = 2e-34 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 14/218 (6%) Query: 358 VFNNVSFSYNHHN-CIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 N+SFSY IS I + ++G +G GKST+ +LL L G + + Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 Query: 417 DGQDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVAQL 472 DG+D+ K++ + LR+ +G++ Q D F T+ + +G N ++E+ VE A L Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA-L 119 Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532 + ++ LSGG+KQRV+IA + +P I++ DE T+ LD R + Sbjct: 120 ELVGLEGLRDRSP------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 Query: 533 QTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGT 568 L L T++I H L + + AD +IV + G Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 136 bits (345), Expect = 2e-32 Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 20/218 (9%) Query: 357 IVFNNVSFSYN----HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412 I + SF+++ + K I+ E+ + A++G G GKS++ L + G Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60 Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472 +++ G +I + Q+ + N T+R NIL+G P ++ ++ L Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACAL 106 Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532 + + LP+G T +GE+G+ LSGG+KQR+S+ARA+ + I + D+ S++D RHI Sbjct: 107 EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166 Query: 533 --QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGT 568 L L N+T +++ H+L + AD I+V D G Sbjct: 167 FENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 135 bits (342), Expect = 3e-32 Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 20/236 (8%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N++ Y G+SFE+ P + L+G +G GK+T+ K+L L G I + Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQELCAAVEVA 470 G D+ K + +R+ IG +PQ+ L+ + T+R N+ LYG +E + Sbjct: 65 LGYDVVKEPAK-VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL--- 120 Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530 L+ F G + ++ LSGG KQR+SIA A+L +P ++I DE TS LD + R Sbjct: 121 -LELF------GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR 173 Query: 531 HIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGG 583 I L L+K T L+ H L + D +I+ + G ++ G+ E L + G Sbjct: 174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 135 bits (342), Expect = 3e-32 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 21/231 (9%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG----- 411 I +++ Y K IS +I + TALIG SG GKST+ +LL RL D+ Sbjct: 1 IELRDLNVYYGDK-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59 Query: 412 GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAA 466 G + +DG+DI + LR+ +G++ Q F ++ N+ YG + +EL Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119 Query: 467 VEVAQLKSFIMKLPNGYDTVVGER--GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 VE A K+ V +R L LSGG++QR+ +ARA+ P +++ DE TS+L Sbjct: 120 VEEALRKA-------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 Query: 525 DIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574 D I+ I+ +A L K T +++ H + AD G +VE G Sbjct: 173 DPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 133 bits (337), Expect = 1e-31 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 23/240 (9%) Query: 354 NGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 I N+SF Y K +S EI ++ LIG +G GKST+ KLL L G Sbjct: 1 LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60 Query: 414 ITIDGQDIK-KITKESLRQTIGIIPQ--DTILFNDTLRYNILYGNPNASDQELCAAVEVA 470 + +DG D + + LRQ +G++ Q D LF T+ + +G N + Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN-------LGLPRE 113 Query: 471 QLKSFIMKLPNGYDTVVGERGLK------LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 +++ + +VG L LSGG+KQRV+IA + P I++ DE T+ L Sbjct: 114 EIEERV----AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169 Query: 525 DIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581 D R + L L + +T +++ H L + + AD ++V D G ++ G + + Sbjct: 170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 133 bits (337), Expect = 1e-31 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 32/252 (12%) Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD- 408 L+++N + F + + +SFE+ P + ++GESG GKST+A L L Sbjct: 6 LEVENLTVEFA----TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61 Query: 409 ---IKGGIITIDGQDIKKITKESLRQ----TIGIIPQDTI-LFNDTLR--------YNIL 452 I G + +DG+D+ +++ +R+ I +I QD + N + + Sbjct: 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121 Query: 453 YGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNP 512 A ++ AVE+ + + LP+ +LSGG +QRV IA A+ P Sbjct: 122 GKGSRAEARKR--AVELLEQ----VGLPD--PERRDRYPHQLSGGMRQRVMIAMALALKP 173 Query: 513 PIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTV 569 ++I DE T++LD+ T+ I L L + L I H L + + AD ++V +G + Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 Query: 570 VESGSHENLISQ 581 VE+G E ++S Sbjct: 234 VETGPTEEILSN 245 Score = 127 bits (320), Expect = 1e-29 Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 27/223 (12%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE--SLRQ 431 +SF++ + L+GESG GKST+A++L L G I DGQD+ E LR+ Sbjct: 308 DDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRR 367 Query: 432 TIGIIPQD---------TILFNDTLRYNILYGNPNASDQELCAAV--EVAQLKSFIMKLP 480 I ++ QD T+ I G A + A + V F+ + P Sbjct: 368 RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP 427 Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540 + +LSGG++QRV+IARA+ P ++I DE S+LD+ + + L L Sbjct: 428 H-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476 Query: 541 KNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580 + T L I+H L+ + AD + V G +VE G E + Sbjct: 477 EELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 132 bits (334), Expect = 3e-31 Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 33/242 (13%) Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI 409 L++KN + F +SF I + L+GESG GKST+A+ + L Sbjct: 2 LEVKNLSVSFPT----GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57 Query: 410 KGGIITIDGQDIKKITKESL---RQTIGIIPQD---------TI--LFNDTLR-YNILYG 454 G I DG+D+ K+++ R+ I ++ QD TI + LR + L Sbjct: 58 TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK 117 Query: 455 NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPI 514 + L V V + + + P+ +LSGG++QRV+IARA+ NP + Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKL 166 Query: 515 IIFDEATSSLDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVE 571 +I DE TS+LD+ + I L L + T L I H L + AD + V G +VE Sbjct: 167 LIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 Query: 572 SG 573 G Sbjct: 227 EG 228 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 128 bits (324), Expect = 4e-30 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 18/232 (7%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I ++ S+ + KG+ ++ + A+IG SG GKST+ +L+ L G + I Sbjct: 1 IELRGLTKSFGGR-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 Query: 417 DGQDIKKITKE---SLRQTIGIIPQDTILFND-TLRYNI---LYGNPNASDQELCAAVEV 469 DG+DI +++ LR+ +G++ Q LF+ T+ N+ L + S++E+ E+ Sbjct: 60 DGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR---EI 116 Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529 K + L D E LSGG K+RV++ARA+ +P ++++DE T+ LD I Sbjct: 117 VLEKLEAVGLRGAEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172 Query: 530 RHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578 I + +L K T++++ H L T AD I V G +V G+ E L Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 128 bits (323), Expect = 5e-30 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 26/242 (10%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + N+SF Y I +SF I + T ++G +G GKST+ K L L K G + + Sbjct: 3 LEVENLSFGYGG-KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI----------LYGNPNASDQELC-A 465 DG+DI ++ + L + + +PQ Y + L+G P+ D+E+ Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEE 121 Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525 A+E+ L+ + + +LSGGE+QRV IARA+ + PI++ DE TS LD Sbjct: 122 ALELLGLEHLADRPVD-----------ELSGGERQRVLIARALAQETPILLLDEPTSHLD 170 Query: 526 IITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQG 582 I + + L L++ T +++ H L+ AD++I+ G +V G+ E ++++ Sbjct: 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230 Query: 583 GI 584 + Sbjct: 231 NL 232 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 125 bits (317), Expect = 3e-29 Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N+S S+ + KGIS + + +IG SG GKST+ + L L + G IT+ Sbjct: 3 IEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 Query: 417 DGQDI-KKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKS 474 DG+D+ K LR+ +G++ Q LF + T+ N+ A E A Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELL 121 Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534 + L + D + LSGG++QRV+IARA+ +P +++FDE TS+LD + Sbjct: 122 EKVGLADKADAYPAQ----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 Query: 535 ALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581 + L++ T++I H + + AD +I DQG ++E G E Sbjct: 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 124 bits (312), Expect = 9e-29 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 23/233 (9%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I F NVS +Y + +SF I + L G SG GKST+ KL+Y G I + Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61 Query: 417 DGQDIKKITKES---LRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELCAA 466 +G D+ ++ LR+ IG++ QD T+ N L ++ P + + Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV 121 Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 +++ LK LP+ +LSGGE+QRV+IARAI+ P +++ DE T +LD Sbjct: 122 LDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170 Query: 527 ITERHIQTALATLSKNRTTLVIA-HRLSTITDADN-IIVFDQGTVVESGSHEN 577 I +++ TT+++A H L + + ++ + G +V S Sbjct: 171 DLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 122 bits (309), Expect = 2e-28 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 29/252 (11%) Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD- 408 L++KN + F G+SFE+ + ++GESG GKS +AK + L Sbjct: 2 LEVKNLSVSFPT----DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK 57 Query: 409 ----IKGGIITIDGQDIKKITKESLRQ----TIGIIPQDTIL-FNDTLRYN------ILY 453 I GG I DG+D+ ++++ LR+ I +I QD + N + + Sbjct: 58 PNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL 117 Query: 454 GNPNASDQELCA-AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNP 512 S +E A+E+ +L + +P+ + + +LSGG +QRV IA A+ NP Sbjct: 118 HGKGLSKKEAKERAIELLEL----VGIPDP-ERRLKSYPHELSGGMRQRVMIAMALALNP 172 Query: 513 PIIIFDEATSSLDIITERHIQTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTV 569 ++I DE T++LD+ + I L L + + T ++I H L + + AD + V G + Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232 Query: 570 VESGSHENLISQ 581 VE G E + Sbjct: 233 VEEGPVEEIFKN 244 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 123 bits (309), Expect = 2e-28 Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 24/237 (10%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I F NVS Y + ++ I + LIG SG GK+T K++ RL + G I I Sbjct: 2 IEFENVSKRYGNKK-AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNI------LYGNPNASDQELCAAVEV 469 DG+DI + LR+ IG + Q LF + T+ NI L + + +++ Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDL 120 Query: 470 AQL--KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527 L + + P+ +LSGG++QRV +ARA+ +PPI++ DE +LD I Sbjct: 121 VGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALDPI 169 Query: 528 TERHIQTALATLSKN--RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581 T + +Q + L K +T + + H + + AD I V D G +V+ + + +++ Sbjct: 170 TRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 122 bits (309), Expect = 2e-28 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 42/217 (19%) Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419 N+S Y + +S I + ++G +G GKST+ K L L G I +DG+ Sbjct: 3 ENLSVGYGGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61 Query: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479 D+ ++ + L + I +PQ A+E+ L + Sbjct: 62 DLASLSPKELARKIAYVPQ---------------------------ALELLGLAHLADR- 93 Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539 ++ LSGGE+QRV +ARA+ + PPI++ DE TS LDI + + L L Sbjct: 94 --PFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143 Query: 540 SK--NRTTLVIAHRLS-TITDADNIIVFDQGTVVESG 573 ++ +T +++ H L+ AD +I+ G +V G Sbjct: 144 ARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 122 bits (308), Expect = 2e-28 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 7/234 (2%) Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 G + +++ Y N + + ISF I+P ++ L+G +G GKST+ RL + +G I Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI 60 Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVEVAQ 471 IDG + + R+ G+IPQ +F+ T R N+ +P SD+E+ E Sbjct: 61 -QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVG 116 Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531 LKS I + P D V+ + G LS G KQ + +AR++L I++ DE ++ LD IT + Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIY 585 I+ L + T ++ HR+ + + +V ++ V + S + L+++ + Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF 230 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 122 bits (307), Expect = 3e-28 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 32/239 (13%) Query: 360 NNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 N+S Y +S EI + ++GESG GKST+A+LL L G I + Sbjct: 7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66 Query: 417 DGQDI-KKITKESLRQTIGIIPQDTI-----------LFNDTLRYNILYGNPNASDQELC 464 DG+ + K ++ + + ++ QD + ++ LR EL Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR-PHGLSKSQQRIAELL 125 Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 V + SF+ + P+ +LSGG++QR++IARA++ P ++I DE TS+L Sbjct: 126 DQVGLP--PSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172 Query: 525 DIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580 D+ + I L L K R T L I+H L+ + D I V D G +VE G E L+S Sbjct: 173 DVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 121 bits (305), Expect = 5e-28 Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 25/238 (10%) Query: 352 IKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411 + + NVS S+ IS +I + L+G SG GK+T+ +++ Sbjct: 1 MPKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59 Query: 412 GIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG-------NPNASDQEL 463 G I +DG+DI + E ++ IG++ Q LF + T+ N+ +G + Sbjct: 60 GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117 Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523 A+E+ L+ F + P+ +LSGG++QRV++ARA++ P +++ DE S+ Sbjct: 118 EEALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSA 166 Query: 524 LDIITERHIQTALATLSKNR--TTLVIAH-RLSTITDADNIIVFDQGTVVESGSHENL 578 LD ++ L L + T + + H + + +D I V + G + + G+ E + Sbjct: 167 LDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 121 bits (304), Expect = 7e-28 Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 53/245 (21%) Query: 339 IEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKST 398 +E++N K + G F + G+SF I + L+GESG GKST Sbjct: 5 LEVKN--LKKYFPVGKG--------FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKST 54 Query: 399 VAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA 458 + +L+ L + G I +G+DI K++KE R+ + Sbjct: 55 LGRLILGLEEPTSGEILFEGKDITKLSKEERRERV------------------------- 89 Query: 459 SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFD 518 EL V + + F+ + P+ +LSGG++QR+ IARA+ NP +I+ D Sbjct: 90 --LELLEKVGLP--EEFLYRYPH-----------ELSGGQRQRIGIARALALNPKLIVAD 134 Query: 519 EATSSLDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSH 575 E S+LD+ + I L L + T L I+H LS + +D I V G +VE G Sbjct: 135 EPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPT 194 Query: 576 ENLIS 580 E + S Sbjct: 195 EEVFS 199 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 120 bits (302), Expect = 1e-27 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 20/238 (8%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI--- 413 I +++ Y + K I+ +I +K TALIG SG GKST+ + L R+ D+ G Sbjct: 8 IEVRDLNLYYGDKH-ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66 Query: 414 --ITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG--NPNASDQELCAAV 467 + +DG++I K+ LR+ +G++ Q F ++ N+ YG D+EL V Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIV 126 Query: 468 EVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 E + +K +D V + + L LSGG++QR+ IARA+ P +++ DE TS+L Sbjct: 127 ESS------LKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180 Query: 525 DIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581 D I+ I+ + L K T +++ H + +D F G +VE G + + + Sbjct: 181 DPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 120 bits (302), Expect = 1e-27 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 17/232 (7%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I F NV+ Y ++ EIA + LIG SG GK+T K++ RL + G I I Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNI-----LYGNPNASDQELCAAVEVA 470 DG+DI++ LR+ IG + Q LF + T+ NI L P +E Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE-----RAD 115 Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530 +L + + P + +LSGG++QRV +ARA+ +PP+++ DE +LD IT Sbjct: 116 ELLALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 Query: 531 HIQTALATLSK--NRTTLVIAHRL-STITDADNIIVFDQGTVVESGSHENLI 579 +Q L + +T + + H + AD I + G +V+ G+ + ++ Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 119 bits (301), Expect = 2e-27 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 26/241 (10%) Query: 357 IVFNNVSFSY----NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412 I NVS ++ +S EI + +IG SG GKST+ +L+ L G Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61 Query: 413 IITIDGQDIKKITKESL---RQTIGIIPQDTILFND-TLRYNILY-----GNPNASDQEL 463 + +DGQD+ +++ L RQ IG+I Q L + T+ N+ + G P A ++ Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ- 120 Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523 VA+L + G +LSGG+KQRV+IARA+ NP I++ DEATS+ Sbjct: 121 ----RVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSA 171 Query: 524 LDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580 LD T + I L +++ T ++I H + + D + V DQG +VE G+ + + Sbjct: 172 LDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 Query: 581 Q 581 Sbjct: 232 N 232 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 119 bits (301), Expect = 2e-27 Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 46/218 (21%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + NVS Y + +S I + AL+G SG GKST+ + + L + G I I Sbjct: 1 LELKNVSKRYGQKT-VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59 Query: 417 DGQDIKKITKES--LRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLK 473 DG+D+ + E LR+ IG++ QD LF T+ NI G Sbjct: 60 DGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------- 100 Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533 LSGG++QRV++ARA+ +P +++ DE TS+LD IT R ++ Sbjct: 101 --------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140 Query: 534 TALATLSKN--RTTLVIAHRLS-TITDADNIIVFDQGT 568 L +L T +++ H L AD ++V G Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 119 bits (300), Expect = 2e-27 Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 15/207 (7%) Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420 N+SFSY I +S ++ + AL G++G GK+T+AK+L L G I ++G Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-- 61 Query: 421 IKKITKESLRQTIGIIPQDT--ILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478 K I + R++IG + QD LF D++R +L G A + L + +K Sbjct: 62 -KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120 Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538 + LSGG+KQR++IA A+L ++IFDE TS LD + + Sbjct: 121 ERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE 171 Query: 539 LSK-NRTTLVIAHRLSTITDADNIIVF 564 L+ + +VI H + + ++ Sbjct: 172 LAAQGKAVIVITHDYEFLAKVCDRVLL 198 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 119 bits (300), Expect = 2e-27 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 14/225 (6%) Query: 357 IVFNNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 I NVS Y K ++ EI + A++G SG GKST+ LL L G Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61 Query: 414 ITIDGQDIKKITKESL----RQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVE 468 + I+G+D+ K++++ L R+ IG + Q+ L D T+ N+ A Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121 Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528 +L +++ D ++ ++ +LSGG++QRV+IARA++ NP II+ DE T +LD T Sbjct: 122 AEEL----LEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 Query: 529 ERHIQTALATLSK--NRTTLVIAHRLSTITDADNIIVFDQGTVVE 571 + + L L+K +T +++ H AD +I G + E Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 119 bits (299), Expect = 3e-27 Identities = 77/246 (31%), Positives = 113/246 (45%), Gaps = 38/246 (15%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N+S +Y + K +S I P + ALIG SG GKST+ + L L + G + I Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 Query: 417 DGQDIKKITKESLRQT---IGIIPQDTILFNDTLRY----NILYG--------------N 455 DG DI K+ ++LRQ IG+I Q FN R N+L G Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQ---FNLIERLSVLENVLSGRLGRRSTWRSLFGLF 117 Query: 456 PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPII 515 P Q AA+E L + R +LSGG++QRV+IARA+++ P +I Sbjct: 118 PKEEKQRALAALERVGLLDKAYQ-----------RADQLSGGQQQRVAIARALMQQPKLI 166 Query: 516 IFDEATSSLDIITERHIQTALATL--SKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVES 572 + DE +SLD + R + L + + T +V H++ + AD I+ G +V Sbjct: 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 Query: 573 GSHENL 578 G L Sbjct: 227 GPPAEL 232 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 118 bits (298), Expect = 4e-27 Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 12/221 (5%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + +S +Y +S + P + AL+G SG GK+T+ +L+ L G I I Sbjct: 1 LELKGLSKTYGSVR-ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475 DG+D+ + E R+ IG++ QD LF + T+ NI +G + + A A+++ Sbjct: 60 DGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFG---LKLRGVPKAEIRARVREL 114 Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535 + + G + ++ +LSGG++QRV++ARA+ + P +++ DE S+LD ++ Sbjct: 115 LELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172 Query: 536 LATLSKNR--TTLVIAHRLS-TITDADNIIVFDQGTVVESG 573 L L + TT+ + H + AD I V ++G +V+ G Sbjct: 173 LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 118 bits (297), Expect = 5e-27 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 27/229 (11%) Query: 357 IVFNNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 I N+S +Y KG+S I + A++G SG GKST+ +L L G Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60 Query: 414 ITIDGQDIKKITKESL----RQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQEL 463 + +DG DI K++++ L R+ IG + Q L D T N+ L G P +E Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120 Query: 464 C-AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522 +E L + P+ +LSGG++QRV+IARA+ +P II+ DE T Sbjct: 121 AEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTG 169 Query: 523 SLDIITERHIQTALATLSK--NRTTLVIAHRLSTITDADNIIVFDQGTV 569 +LD T + + L L+K T +V+ H AD II G + Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 116 bits (291), Expect = 3e-26 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 13/233 (5%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I V+ S+ I G+ ++ + A++G SG GKST+ +L+ L G I I Sbjct: 9 IEVRGVTKSFGDR-VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67 Query: 417 DGQDIKKITKE---SLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQL 472 DG+DI ++++E +R+ +G++ Q LF+ T+ N+ + + E+ + Sbjct: 68 DGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLM 127 Query: 473 KSFIMKL-PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531 K ++ L D E LSGG ++RV++ARAI +P ++ DE TS LD I+ Sbjct: 128 KLELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183 Query: 532 IQTALATLSK--NRTTLVIAHRLSTI-TDADNIIVFDQGTVVESGSHENLISQ 581 I + L+ T +++ H L ++ T AD + V G V+ G+ E L++ Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 115 bits (289), Expect = 3e-26 Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 356 HIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415 + NV S+ + K ++ +I + L+G SG GKST+ +++ L + G I Sbjct: 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61 Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG--NPNASDQELCAAVEVA-- 470 IDG+D+ + E ++ I ++ Q+ L+ + T+ NI +G E+ V+ Sbjct: 62 IDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119 Query: 471 --QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528 L+ + + P +LSGG++QRV++ARA+++ P + + DE S+LD Sbjct: 120 LLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL 168 Query: 529 ERHIQTALATLSKNR--TTLVIAHRLSTI-TDADNIIVFDQGTVVESGSHENL 578 +++ + L + TT+ + H T AD I+V + G + + G+ L Sbjct: 169 RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 115 bits (289), Expect = 4e-26 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 25/220 (11%) Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR----- 430 +S ++ + ++G SG GKST+ + + RL + G + IDGQDI ++++ LR Sbjct: 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 Query: 431 ------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYD 484 Q+ ++P T+L N + ++ A+E+ L+ + K P+ Sbjct: 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD--- 159 Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-- 542 +LSGG +QRV +ARA+ +P I++ DEA S+LD + R +Q L L Sbjct: 160 --------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211 Query: 543 RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581 +T + I H L + D I + G +V+ G+ E +++ Sbjct: 212 KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 114 bits (288), Expect = 6e-26 Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 19/237 (8%) Query: 357 IVFNNVSFSYNHHNCIF---KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 I NVS + K +S + + +IG SG GKST+ + + L G Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61 Query: 414 ITIDGQDIKKITKESL---RQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEV 469 + +DG D+ ++ + L R+ IG+I Q L + T+ N+ E+ A V Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL------PLEI-AGVPK 114 Query: 470 AQLKSFIMKLPN--GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527 A+++ +++L G + +LSGG+KQRV IARA+ NP +++ DEATS+LD Sbjct: 115 AEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581 T + I L +++ T ++I H + + D + V ++G VVE G+ E + + Sbjct: 175 TTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 113 bits (284), Expect = 2e-25 Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 24/225 (10%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N+ S+ + + KGI + + +IG SG GKST+ + + L + G I I Sbjct: 1 IEIKNLHKSFGDFH-VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59 Query: 417 DGQDIKKITKE--SLRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELC-AA 466 DG + K LRQ +G++ Q T+L N TL + G A +E Sbjct: 60 DGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119 Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 +E L P +LSGG++QRV+IARA+ NP +++FDE TS+LD Sbjct: 120 LEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168 Query: 527 ITERHIQTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTV 569 + + L++ T+V+ H + + AD +I D G + Sbjct: 169 ELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 112 bits (282), Expect = 3e-25 Identities = 70/212 (33%), Positives = 104/212 (49%), Gaps = 21/212 (9%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I F NV+ +Y + GI+ I+ + L+G SG GKST+ KL+Y+ G I + Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 Query: 417 DGQDIKKITKES---LRQTIGIIPQDTILFNDTLRYN-------ILYGNPNASDQELCAA 466 +GQD+ + + LR+ IG++ QD L D Y + P + + AA Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAA 120 Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 +E+ L LP LSGGE+QRV+IARAI+ +P I+I DE T +LD Sbjct: 121 LELVGLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169 Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITDA 558 T I L ++K TT+V+A + D Sbjct: 170 DTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 112 bits (281), Expect = 4e-25 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 24/226 (10%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + N++ Y G+S + L+G +G GK+T+ ++L L G I I Sbjct: 1 LQLENLTKRYGK-KRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYG-NPNASDQELCAAVEV 469 DGQD+ K + LR+ IG +PQ+ ++ + L Y L G + +E+ Sbjct: 59 DGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117 Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529 L K LSGG ++RV IA+A++ +P I+I DE T+ LD E Sbjct: 118 VNLGDRAKKKIG-----------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD-PEE 165 Query: 530 RH-IQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573 R + L+ L ++R ++ H + + + + V ++G +V G Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 111 bits (279), Expect = 6e-25 Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 13/210 (6%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433 + +SFE + T L+GE+G GK+T+ +++ L G +TIDG D + +R+ I Sbjct: 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKI 77 Query: 434 GIIPQDTILFND-TLRYNILY-GNPNA-SDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490 G++ + L+ T R N+ Y N S +E+ A + K + + R Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL-SKRLQL------LEYLDRR 130 Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIA 549 + S G KQ+V+IARA++ +P I++ DE TS LDI T R + L ++ R + + Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190 Query: 550 HRLSTITD-ADNIIVFDQGTVVESGSHENL 578 H + + D +IV +G VV GS E L Sbjct: 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 111 bits (278), Expect = 7e-25 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 29/239 (12%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N++ SY + + + IS + + TALIG +G GKST+ K + L G I I Sbjct: 5 IEVENLTVSYGNRP-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63 Query: 417 DGQDIKKITKESLRQTIGIIPQ-------------DTILFNDTLRYNILYGNPNASDQEL 463 G K + K R IG +PQ D +L + +++ Sbjct: 64 FG---KPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120 Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523 A+E ++ + +GE LSGG+KQRV +ARA+ +NP +++ DE + Sbjct: 121 DEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTG 169 Query: 524 LDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ 581 +D+ ++ I L L + +T L++ H L + + ++ ++ SG E ++++ Sbjct: 170 VDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 111 bits (278), Expect = 7e-25 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 14/234 (5%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N+S +Y + K ++ EI + A+IG SG GKST+ + L L D G I Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63 Query: 417 DGQDIKKITKESLRQ---TIGIIPQDTILFND-TLRYNILYGNPN-----ASDQELCAAV 467 +G I K+ + LR+ IG+I Q L ++ N+L G S L + Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123 Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527 + AQ + ++ G +R LSGG++QRV+IARA+++ P II+ DE +SLD Sbjct: 124 DKAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181 Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578 + + + L +++ T +V H++ AD II G +V G L Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 110 bits (278), Expect = 7e-25 Identities = 62/229 (27%), Positives = 107/229 (46%), Gaps = 31/229 (13%) Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418 +++ SY H + + +SFE+ P + A++G +G GKST+ K + L G I + G Sbjct: 2 VEDLTVSYGGHP-VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60 Query: 419 QDIKKITKESLRQTIGIIPQ-------------DTILFNDTLRYNILYGNPNASDQELCA 465 + ++K R+ IG +PQ D +L + A ++ Sbjct: 61 KPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115 Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525 A+E L D +GE LSGG++QRV +ARA++++P +++ DE + +D Sbjct: 116 ALERVGLSELA-------DRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164 Query: 526 IITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573 T+ I L L + T LV+ H L + + + ++ TVV SG Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213 >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 109 bits (274), Expect = 2e-24 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 27/221 (12%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + VS S+ + + I+ + + A++G SG GKST+ +L+ L G + + Sbjct: 4 LEIEGVSKSFGGVE-VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 Query: 417 DGQDIKKITKESLRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELCAAVEV 469 DG+ + + IG + Q+ T+L N L + + + + +E+ Sbjct: 63 DGRPVTGPGPD-----IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL 117 Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529 L F K P+ +LSGG +QRV+IARA+ P +++ DE +LD +T Sbjct: 118 VGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166 Query: 530 RHIQTALATL--SKNRTTLVIAHRLS-TITDADNIIVFDQG 567 +Q L L +T L++ H + + AD ++V Sbjct: 167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 108 bits (271), Expect = 6e-24 Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 31/230 (13%) Query: 357 IVFNNVSFSY---NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413 + NVS +Y + IS + + AL+G SG GKST+ +++ L G Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60 Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFN-DTLRYNILYG------NPNASDQELCAA 466 + +DG+ + + G + Q L T+ N+ G + + Sbjct: 61 VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115 Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 +E+ L F P+ +LSGG +QRV++ARA+ +P +++ DE S+LD Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 Query: 527 ITERHIQTALATL--SKNRTTLVIAHRLS-TITDADNIIVFDQ--GTVVE 571 +T +Q L + +T L++ H + + AD ++V G +V Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 108 bits (270), Expect = 6e-24 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 28/239 (11%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + ++V FSY H F + + A++G SG GKST+ L+ G I I Sbjct: 2 LALDDVRFSYGHLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI 58 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG-NP----NASDQELCAAVEVA 470 +G D + + ++ Q+ LF T+ NI G +P NA +E A A Sbjct: 59 NGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA-AA 115 Query: 471 Q--LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528 Q L F+ +LP +LSGG++QRV++AR +++ PI++ DE S+LD Sbjct: 116 QVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164 Query: 529 ERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGI 584 + ++ L R T L++ H AD ++ D G + GS + L+S Sbjct: 165 RAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 108 bits (270), Expect = 6e-24 Identities = 58/212 (27%), Positives = 85/212 (40%), Gaps = 58/212 (27%) Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418 N+SF Y +S + + AL+G +G GKST+ + + L G I IDG Sbjct: 2 IENLSFRYGGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478 +DI K+ E LR I Y V QL Sbjct: 61 KDIAKLPLE------------------ELRRRIGY---------------VPQL------ 81 Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538 SGG++QRV++ARA+L NP +++ DE TS LD + + L Sbjct: 82 ----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125 Query: 539 LS-KNRTTLVIAHRLSTITDA-DNIIVFDQGT 568 L+ + RT +++ H A D +IV G Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 107 bits (269), Expect = 9e-24 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 44/215 (20%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N+S Y IS + + L+G +G GK+T+ K++ L G I + Sbjct: 1 IEVRNLSKRYGKKT-ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476 G+DIKK E +++ IG +P++ L Sbjct: 60 LGKDIKK-EPEEVKRRIGYLPEEPSL---------------------------------- 84 Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536 Y+ + LKLSGG KQR+++A+A+L +P ++I DE TS LD + R L Sbjct: 85 ------YENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138 Query: 537 ATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTV 569 L K T++++ H L D + + + G + Sbjct: 139 RELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 105 bits (264), Expect = 3e-23 Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 27/223 (12%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR--- 430 S ++ + ++G SG GKST+ +LL RL + G I +DG+DI K++ LR Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104 Query: 431 --------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCA-AVEVAQLKSFIMKLPN 481 Q+ ++P T+L N + G P A +E A+E+ L+ + K PN Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEV-QGVPKAEREERALEALELVGLEGYADKYPN 163 Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541 +LSGG +QRV +ARA+ +P I++ DEA S+LD + +Q L L Sbjct: 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212 Query: 542 N--RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581 +T + I H L + D I + G +V+ G+ E ++ Sbjct: 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 105 bits (264), Expect = 3e-23 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 21/227 (9%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT-KESLRQT 432 G+S + P + AL+GE+G GKST+ K+L +Y G I IDG+ + + +++L Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 Query: 433 IGIIPQDTILFND-TLRYNILYGNPNAS-----DQELCAAVEVAQLKSFIMKLPNGYDTV 486 I + Q+ L + ++ NI G D++ L + L DT+ Sbjct: 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLAR--LGLDIDPDTL 142 Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL----SKN 542 VG+ LS ++Q V IARA+ + ++I DE T++L T + + + ++ Sbjct: 143 VGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL---TVKETERLFDLIRRLKAQG 195 Query: 543 RTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSM 588 + I+HRL + + AD I V G VV + S+ + M Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLM 242 Score = 83.3 bits (206), Expect = 2e-16 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 19/229 (8%) Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES---- 428 + +SF + + + G G G++ +A+ L+ G I +DG+ ++ + Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 Query: 429 -------LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481 R++ G++ +I N TL + D+ A+ ++ +K P+ Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394 Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541 + LSGG +Q+V +AR + +P ++I DE T +D+ + I + L+ Sbjct: 395 PEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA 449 Query: 542 N-RTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSM 588 + L+I+ L + +D I+V +G +V E ++ I + Sbjct: 450 EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE-ATEEAIMAAA 497 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 104 bits (261), Expect = 7e-23 Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 48/228 (21%) Query: 357 IVFNNVSFS-----YNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDI 409 + F N++ + + K +S + P + TA++G SG GKST+ L R Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63 Query: 410 KGGIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVE 468 G + I+G + + K S R+ IG +PQD IL T+R +++ Sbjct: 64 VSGEVLING---RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF--------------- 105 Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528 A+L+ LSGGE++RVSIA ++ NP ++ DE TS LD + Sbjct: 106 AAKLRG-------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146 Query: 529 ERHIQTALATLSK-NRTTLVIAHRLST--ITDADNIIVFDQGTVVESG 573 + + L L+ RT + H+ S+ D +++ QG V+ G Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 103 bits (259), Expect = 1e-22 Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 21/209 (10%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433 G+SF + P + T L+G +G GK+T ++L L + G T+DG D+ K E+ R+ + Sbjct: 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA-RRRL 80 Query: 434 GIIPQDTILFND-TLRYNI-----LYG-NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486 G + T L++ T R N+ LYG + L + ++ + + Sbjct: 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-------- 132 Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTT 545 R S G +Q+V+IARA++ +PP+++ DE T+ LD++ R ++ + L + + Sbjct: 133 ---RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI 189 Query: 546 LVIAHRLSTITD-ADNIIVFDQGTVVESG 573 L H + + D ++V +G VV G Sbjct: 190 LFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 103 bits (259), Expect = 1e-22 Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 30/231 (12%) Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428 H GIS + + L+GESG GKST+ L RL +G I DGQDI ++++ Sbjct: 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIR-FDGQDIDGLSRKE 357 Query: 429 ---LRQTIGIIPQD---------TI--LFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474 LR+ + ++ QD T+ + + LR + + DQ + A+E L Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP 417 Query: 475 FIM-KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533 + P+ + SGG++QR++IARA++ P +I+ DE TS+LD + + Sbjct: 418 ATRNRYPH-----------EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466 Query: 534 TALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581 L L + + L I+H L+ + +IV G +VE G E + + Sbjct: 467 DLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517 Score = 98.0 bits (244), Expect = 7e-21 Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 22/247 (8%) Query: 361 NVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG-----GII 414 +V+F KGISF+I + AL+GESG GKS A + L G I Sbjct: 13 SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72 Query: 415 TIDGQDIKKITKESLRQT----IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470 DG+D+ ++ LR IG+I Q+ + + L + I G A L + A Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPL-HTI--GKQLAEVLRLHRGLSRA 129 Query: 471 QLKSFIMKLPNGYDTVVGERGLK-----LSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525 ++ ++L E+ L LSGG++QRV IA A+ P ++I DE T++LD Sbjct: 130 AARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189 Query: 526 IITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ- 581 + + I L L L I H L + AD + V G +VE+G+ E L + Sbjct: 190 VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAP 249 Query: 582 GGIYTSM 588 YT Sbjct: 250 QHPYTRK 256 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 103 bits (258), Expect = 2e-22 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 14/213 (6%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKI-TKESLR 430 I G+S + + AL+G +G GK+T+ K + L + G I DG+DI + E R Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 Query: 431 QTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489 IG +P+ +F + T+ N+L G + A +E ++ +L + G Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE--RVYELFPRLKERRKQLAGT 132 Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI- 548 LSGGE+Q ++IARA++ P +++ DE + L I A+ L T+++ Sbjct: 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLV 188 Query: 549 ---AHRLSTITDADNIIVFDQGTVVESGSHENL 578 A I AD V ++G VV G+ L Sbjct: 189 EQNARFALEI--ADRAYVLERGRVVLEGTAAEL 219 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 102 bits (256), Expect = 3e-22 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 20/209 (9%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433 +S + + L+G +G GK+T K+L G I+G I+ +++ RQ++ Sbjct: 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSL 77 Query: 434 GIIPQDTILFN-----DTLR-YNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTV 486 G PQ LF+ + LR Y L G P + +E + V L K Sbjct: 78 GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR----- 132 Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTL 546 LSGG K+++S+A A++ P +++ DE TS LD + R I + + K R+ + Sbjct: 133 ------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSII 186 Query: 547 VIAHRLSTITD-ADNIIVFDQGTVVESGS 574 + H + D I + G + GS Sbjct: 187 LTTHSMDEAEALCDRIAIMSDGKLRCIGS 215 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 101 bits (253), Expect = 6e-22 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%) Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI----KKITKESLRQ 431 I F++ + T + G SG GKST+ + + L GG I ++G + KKI ++ Sbjct: 17 IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 Query: 432 TIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490 IG++ Q LF + +R N+ +G ++E +V+ L G D ++ Sbjct: 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD-ELLDLL------GLDHLLNRY 128 Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVI 548 +LSGGEKQRV++ARA+ P +++ DE S+LD + L + K N + + Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188 Query: 549 AHRLSTI-TDADNIIVFDQGTVVESG 573 H LS AD I+V + G + G Sbjct: 189 THDLSEAEYLADRIVVMEDGRLQYIG 214 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 100 bits (251), Expect = 9e-22 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 19/213 (8%) Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI----KKITKESLRQ 431 +F + TAL G SG GK+++ ++ L G I ++G+ + K I ++ Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76 Query: 432 TIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490 IG + QD LF + T+R N+ YG + + V + ++ + + P Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG--------- 127 Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVI 548 LSGGEKQRV+I RA+L P +++ DE +SLD+ +R I L L N L + Sbjct: 128 --TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185 Query: 549 AHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580 +H L + AD ++V + G V SG E + Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 100 bits (251), Expect = 1e-21 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 16/208 (7%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQT 432 +S + + AL+GE+G GKST+ K+L+ LY G I +DG++++ K ++++R Sbjct: 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 Query: 433 IGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK--LPNGYDTVVGE 489 IG++ Q +L T+ NI+ G + + A++K + LP D V + Sbjct: 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD 140 Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK----NRTT 545 LS GE+QRV I +A+ + ++I DE T+ L T + L + +T Sbjct: 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVL---TPQEADELFEILRRLAAEGKTI 193 Query: 546 LVIAHRLSTITD-ADNIIVFDQGTVVES 572 + I H+L + AD + V +G VV + Sbjct: 194 IFITHKLKEVMAIADRVTVLRRGKVVGT 221 Score = 66.3 bits (162), Expect = 2e-11 Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 11/208 (5%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT--KESLRQ 431 K +SFE+ + + G +G G+S + + + L G I ++G+D+ +E R Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 Query: 432 TIGIIPQDTI----LFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487 + +P+D + + +L N++ G + ++ ++ F +L +D Sbjct: 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 Query: 488 GERGLK---LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT 544 LSGG +Q++ +AR + + P ++I + T LD+ I L L Sbjct: 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGK 454 Query: 545 T-LVIAHRLSTITD-ADNIIVFDQGTVV 570 L+I+ L I + +D I V +G +V Sbjct: 455 AVLLISEDLDEILELSDRIAVIYEGRIV 482 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 99.5 bits (248), Expect = 2e-21 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 11/212 (5%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433 K +S E+ ++G +G GKS + + + G I ++G+DI + E ++ I Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDI 73 Query: 434 GIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492 +PQ+ LF + T+ NI YG + +V ++ + G D ++ + Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKPE 128 Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI--AH 550 LSGGE+QRV+IARA++ NP I++ DE S+LD+ T+ ++ L + K V+ H Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188 Query: 551 RLSTI-TDADNIIVFDQGTVVESGSHENLISQ 581 AD + + G +++ G E + + Sbjct: 189 DFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 99.0 bits (247), Expect = 3e-21 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 11/225 (4%) Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420 N+S Y +G+S E+ + AL+G +G GK+T+ K + L + G I DG+D Sbjct: 8 NLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGED 66 Query: 421 IKKI-TKESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478 I + E R I +P+ +F T+ N+L G D+E + F Sbjct: 67 ITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF--- 123 Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538 P + +R LSGGE+Q ++IARA++ P +++ DE + L I A+ Sbjct: 124 -PRLKE-RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181 Query: 539 LSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580 L K T L++ + AD V + G +V SG+ L++ Sbjct: 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 98.4 bits (245), Expect = 5e-21 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 14/220 (6%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431 + G+S ++ P + A++G +G GKST+ K L G +T++G + E L + Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75 Query: 432 TIGIIPQDTIL-FNDTLRYNILYGN-PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489 ++PQ++ L F T++ + G P+ S +E E ++ + + + G Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE---PEEDERIAAQALAA-TDLSGLAGR 131 Query: 490 RGLKLSGGEKQRVSIAR------AILKNPPIIIFDEATSSLDIITERHI-QTALATLSKN 542 LSGGE+QRV +AR + + + DE TS+LDI + H + A + Sbjct: 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG 191 Query: 543 RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581 L + H L+ AD I++ QG V+ SGS +++++ Sbjct: 192 GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 98.1 bits (244), Expect = 6e-21 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 32/230 (13%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + + + FSY F A + TA++G SG GKST+ L+ + G + I Sbjct: 1 VRLDKIRFSYGEQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI 57 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG-NP----NASDQELCAAVEVA 470 +G D+ + + ++ Q+ LF T+ N+ G +P A D++ A+EVA Sbjct: 58 NGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ---AIEVA 112 Query: 471 Q----LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 L +LP +LSGGE+QRV++AR ++++ P+++ DE ++LD Sbjct: 113 LARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161 Query: 527 ITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573 + + L T L++ H+ A ++ D G + G Sbjct: 162 ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 97.5 bits (243), Expect = 1e-20 Identities = 62/232 (26%), Positives = 112/232 (48%), Gaps = 24/232 (10%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I NVS Y G+S +I + L+G SG GK+T+ +L+ G I + Sbjct: 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG------NPNASDQELCAAVEV 469 DG+DI + ++ + + Q+ LF T+ NI +G + + A+++ Sbjct: 60 DGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDL 117 Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529 QL+ + + P+ +LSGG++QRV+IARA++ P +++ DE +LD+ Sbjct: 118 VQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166 Query: 530 RHIQTALATLSKNR--TTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENL 578 + +Q L L K T + + H +T +D I V ++G + + G+ E + Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 95.9 bits (238), Expect = 3e-20 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 8/219 (3%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVA-KLLYRLYDIKGGII- 414 + N FS+ I+ I + T ++G+ G GKS++ +L + ++G + Sbjct: 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60 Query: 415 --TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472 + + + T+ R ++ Q L N T+ NI +G+P + Q A + L Sbjct: 61 SNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSL 119 Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532 + I LP G T +GERG+ LSGG++QR+ +ARA+ +N I+ D+ S+LDI H+ Sbjct: 120 QPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179 Query: 533 QTA--LATLSKNRTTLV-IAHRLSTITDADNIIVFDQGT 568 L L ++ TLV + H+L + AD II G+ Sbjct: 180 MQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 95.8 bits (238), Expect = 3e-20 Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 18/212 (8%) Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ- 431 IS +I + AL+G SG GKST+ +++ L G I ++G+ + ++ ++R Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77 Query: 432 TIGIIPQDTILF-NDTLRYNILYG----NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486 +G + Q LF + T+ NI +G S+ E+ A VE L+ +++L Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE-ELLR--LVQLEG----- 129 Query: 487 VGER-GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR-- 543 + +R +LSGG++QRV++ARA+ P +++ DE +LD + ++ L L Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189 Query: 544 TTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574 TT+ + H + AD ++V +QG + + G Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 95.1 bits (236), Expect = 5e-20 Identities = 67/262 (25%), Positives = 125/262 (47%), Gaps = 24/262 (9%) Query: 329 EELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY--NHHNCIFKGISFEIAPSKKT 386 +E L EK + +N D K + NN+ FS + K I+ +I + Sbjct: 14 DEGFGELLEKAKQEN----NDRKHSSDD---NNLFFSNLCLVGAPVLKNINLKIEKGEML 66 Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDT 446 A+ G +G GK+++ L+ + G I G+ I Q + + T Sbjct: 67 AITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-------------ISFSSQFSWIMPGT 113 Query: 447 LRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIAR 506 ++ NI++G + + + V+ QL+ I K P +TV+GE G+ LSGG++ R+S+AR Sbjct: 114 IKENIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLAR 172 Query: 507 AILKNPPIIIFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRLSTITDADNIIVFD 565 A+ K+ + + D LD+ TE+ I ++ + L N+T +++ ++ + AD I++ Sbjct: 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 Query: 566 QGTVVESGSHENLISQGGIYTS 587 +G+ G+ L S ++S Sbjct: 233 EGSSYFYGTFSELQSLRPDFSS 254 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 94.6 bits (235), Expect = 6e-20 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 24/217 (11%) Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE 427 I KG+ + + A++G SG GKST+ +L L D G + + GQ + K+ ++ Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80 Query: 428 ---SLR--------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476 +LR Q+ +IP T L N L + +++D A + + Sbjct: 81 ARAALRARHVGFVFQSFHLIPNLTALENVAL--PLELRGESSADSRAGAKALLEAV---- 134 Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536 G + +LSGGE+QRV++ARA P ++ DE T +LD T I L Sbjct: 135 -----GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189 Query: 537 ATLSKNR-TTLV-IAHRLSTITDADNIIVFDQGTVVE 571 L++ R TTLV + H D + G +VE Sbjct: 190 FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 94.7 bits (236), Expect = 7e-20 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 13/129 (10%) Query: 397 STVAKLLYRLYDIKGGIITIDGQDIKKI-TKESLRQTIGIIPQDTILF-NDTLRYNILYG 454 ST+ KL+ L G I +DG+D + ++++LR+ IG++ QD LF T+R N+ +G Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60 Query: 455 -NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPP 513 +D A+E L F+ + P G LSGG+KQRV+IARA+LK P Sbjct: 61 LRDKEADARAEEALERVGLPDFLDRSPVG----------TLSGGQKQRVAIARALLKKPK 110 Query: 514 IIIFDEATS 522 +++ DE T+ Sbjct: 111 LLLLDEPTA 119 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 92.6 bits (230), Expect = 2e-19 Identities = 89/426 (20%), Positives = 156/426 (36%), Gaps = 43/426 (10%) Query: 144 IRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNW-- 201 ++S+ +I + + + +AF + M VI+Y + ++ Sbjct: 173 LQSVISLISFTGI-----LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIG 227 Query: 202 --RVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKE---SAIS 256 + L+ + L + + N E I + EK E RL+ + Sbjct: 228 RPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVR 287 Query: 257 VATSLGWLNFGQGLIFSIGMVITMIISSHAVYI-GEQTVGDFV----FINTLLTQLAIPL 311 L W G G + V+ I+ + Y G+ T G + + + L+ + Sbjct: 288 AQIRLTWFQLGYGWL----SVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFI 343 Query: 312 NILGTI--YRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKI--KNGHIVFNNVSFSYN 367 + I +R + E + L E + + I N+S Sbjct: 344 DNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTP 403 Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE 427 + ++FE+ P ++ + GESG GK+++ + L L+ G I++ Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-------- 455 Query: 428 SLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVEVAQLKSFIMKLPNGYDT 485 + +PQ L TLR + Y N SD EL A + L +L Sbjct: 456 ---SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE---- 508 Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT 545 LSGGE+QR++ AR +L P + DEATS+LD TE + L + T Sbjct: 509 -EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATV 567 Query: 546 LVIAHR 551 + + HR Sbjct: 568 ISVGHR 573 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 92.5 bits (230), Expect = 3e-19 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 17/221 (7%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + N+++ +Y + IS + + +G +G GK+T K++ L G IT Sbjct: 1 LKTNDLTKTYGKKRVL-DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476 DG+ +K E+LR+ IG + + Y N A + A + K I Sbjct: 60 DGKSYQK-NIEALRR-IGAL----------IEAPGFYPNLTARENLRLLARLLGIRKKRI 107 Query: 477 MKLPN--GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534 ++ + G ++ S G KQR+ IA A+L NP ++I DE T+ LD + ++ Sbjct: 108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167 Query: 535 ALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESG 573 + +L T++I+ H LS I AD I + ++G ++E G Sbjct: 168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 91.8 bits (228), Expect = 5e-19 Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 24/227 (10%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + NV+ + + + ++ +IA + L+G SG GK+T +++ L + G I I Sbjct: 1 VELENVTKRFGNVTAL-DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG------NPNASDQELCAAVEV 469 G+D+ + + I ++ Q+ L+ + T+ NI +G + D+ + E+ Sbjct: 60 GGRDVTDL--PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAEL 117 Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529 Q++ + + P +LSGG++QRV++ RAI++ P + + DE S+LD Sbjct: 118 LQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166 Query: 530 RHIQTALATLSKN--RTTLVIAH-RLSTITDADNIIVFDQGTVVESG 573 ++ L L + TT+ + H ++ +T AD I V + G + + G Sbjct: 167 VQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 91.9 bits (228), Expect = 5e-19 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 12/230 (5%) Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI 409 + + N F + G+S EIA +IG +G GKST+ + Sbjct: 2 ISLSNATKTFFKGT---PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP 58 Query: 410 KGGIITIDGQDIKKITKESLRQTIGIIPQDTIL---FNDTLRYNILYGNPNASDQELCAA 466 G I IDG D+ K + + + QD + T+ N+ + L +A Sbjct: 59 TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA 118 Query: 467 VEVAQLKSF---IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523 + + SF + +L G + + +R LSGG++Q +S+ A L P I++ DE T++ Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 Query: 524 LDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVV 570 LD T + A + + TTL++ H + D + +I+ G +V Sbjct: 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 91.1 bits (226), Expect = 9e-19 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 21/231 (9%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N+ Y + +G+SF + + L+G +G GK+T K+L L G T+ Sbjct: 1 IEVENLVKKYGDFEAV-RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQELCAAVEVA 470 G D+ + +E +R+ IGI+ QD + ++ T N+ LYG P A +E + Sbjct: 60 AGHDVVREPRE-VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RID 113 Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530 +L F + L D +V SGG ++R+ IAR+++ P ++ DE T LD T Sbjct: 114 ELLDF-VGLLEAADRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRA 168 Query: 531 HIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578 H+ + L + T L+ H + D + + D G ++ G+ E L Sbjct: 169 HVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 91.0 bits (226), Expect = 9e-19 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 24/237 (10%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I NVS SY + +S +I T++IG +G GKST+ ++ RL G ITI Sbjct: 2 ITIENVSKSYGTKV-VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60 Query: 417 DGQDIKKITKESLRQTIGIIPQD-TILFNDTL-------RYNILYGNPNASDQELC-AAV 467 DG ++ + L + + I+ Q+ I T+ R+ G D+ + A+ Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120 Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527 E L L + Y +LSGG++QR IA + ++ ++ DE ++LD+ Sbjct: 121 EYLHL----EDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169 Query: 528 TERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581 I L L+ +T +V+ H ++ + +D+I+ G VV+ GS + +I Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 90.8 bits (225), Expect = 1e-18 Identities = 116/575 (20%), Positives = 217/575 (37%), Gaps = 75/575 (13%) Query: 19 MWPANRWDLKVRIIGAMFSVIASKFVI-LGIPFLLKWVTESLIE--QSTASKTTSYLTIG 75 + NRW SV+A LL ++ ++LIE ++ +L + Sbjct: 7 LLRQNRW--------PFISVMALSLASGALGIGLLAFINQALIETADTSLLVLPEFLGLL 58 Query: 76 IVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVS-HVYKLSQRFHINYKVG 134 ++ +++S + + + H L E + +++ + ++ + Sbjct: 59 LLFMVSSLISQLGLTTLGQHFIYKLRSEFIK--------KILDTPLERIER-----LGSA 105 Query: 135 KLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWF 194 +L + +++ +R+I + + IL S A+L Y + + +TV+ V Sbjct: 106 RLLAGLTSDVRNISFAFSRLPELVQAIILTLG-SAAYLAY----LSPKMFLLTVVWIV-V 159 Query: 195 TIITSNWRVGLSKKMNNLLHECHAKVF-----------DTLINFETIQYFNSEKFEINRL 243 TI + K E K+ + +N E +Y ++ + + Sbjct: 160 TIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219 Query: 244 EKYISKYKESAISVATS-LGWLNFGQGLIFS-IGMVITMIISSHAVYIGEQTVGDFVFIN 301 E Y+ I T L +N+ ++ IG+V + +S +G + I Sbjct: 220 E-----YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS-----LGWASTNVAATIV 269 Query: 302 TLLTQLAIPLNILGTI---YRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIV 358 +L L PL I ++ +F +I +L + K + D K + Sbjct: 270 LVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL-ELAPYKADFPRPQAFPDWK----TLE 324 Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418 NV F+Y + I+ I + LIG +G GKST+A LL LY + G I +DG Sbjct: 325 LRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478 + + E R+ + D LF+ L AS Q + ++ +L Sbjct: 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTSL 439 Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538 + LKLS G+K+R+++ A+L+ I++ DE + D R L Sbjct: 440 NDGRFSN------LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLP 493 Query: 539 LSK--NRTTLVIAHRLSTITDADNIIVFDQGTVVE 571 L K +T I+H AD ++ G + E Sbjct: 494 LLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 90.4 bits (224), Expect = 1e-18 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 17/239 (7%) Query: 356 HIVFNNVSFSYNHHNC----IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD--- 408 + F N++ S + I KG+S P + A++G SG GK+T+ L + Sbjct: 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL 84 Query: 409 IKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAV 467 G I ++G+ S R+ G + QD +L T+R + + L Sbjct: 85 KLSGEILLNGR---PRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE 141 Query: 468 EVAQLKSFI--MKLPNGYDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 + +++ I + L DT++G G++ LSGGE++RVSIA +L +P I+ DE TS L Sbjct: 142 KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 Query: 525 DIITERHIQTALATLS-KNRTTLVIAHRLST--ITDADNIIVFDQGTVVESGSHENLIS 580 D + + L L+ RT + H+ S+ D +++ +G VV SGS L+ Sbjct: 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 90.6 bits (225), Expect = 1e-18 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 22/220 (10%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI-----KKITKES 428 +S E+ P + LIG +G GK+T+ L+ Y G + G+DI +I + Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 Query: 429 LRQTIGII---PQDTILFN------DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479 + +T I P T+L N L + L G P A +E A +L F + L Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF-VGL 139 Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539 D G LS G+++R+ IARA+ P +++ DE + L+ + + L Sbjct: 140 GELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195 Query: 540 SKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHE 576 T L+I H + + AD I+V + G V+ G+ E Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 88.8 bits (220), Expect = 4e-18 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 25/233 (10%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I NVS N I +S+++ P + A++G +G GK+T+ LL + G +T+ Sbjct: 32 IELKNVSVRRNGKK-ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90 Query: 417 DGQDIKKI-TKESLRQTIGIIP---QDTILFNDTLRYNILYG--------NPNASDQELC 464 G+ K T LR+ IG++ + +T+R +L G + + ++L Sbjct: 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLA 150 Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 AA + L+ K + LS GE++RV IARA++K+P ++I DE L Sbjct: 151 AAQWL--LELLGAK------HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202 Query: 525 DIIT-ERHIQT--ALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573 D+I E+ + LA L + H I + ++ +G VV G Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 88.9 bits (220), Expect = 4e-18 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 8/181 (4%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431 I IS + + A+ G SG GKST+ K++ L G + +G+D+ + E+ RQ Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77 Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491 + Q LF DT+ N+++ ++ A + L F LP D+++ + Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPW-QIRNRRPDRAAALDLLARF--ALP---DSILTKNI 131 Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL--SKNRTTLVIA 549 +LSGGEKQR+++ R + P I++ DE TS+LD +R+I+ + +N L I Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWIT 191 Query: 550 H 550 H Sbjct: 192 H 192 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 87.4 bits (217), Expect = 9e-18 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 19/215 (8%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433 +SF + P + LIG +G GK+T+ L+ G + DG+DI + + Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL-PPHEIARL 75 Query: 434 GIIP--QDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSF---------IMKLPN 481 GI Q LF + T+ N++ + L A + + + L + Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135 Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS- 540 D GE LS G+++R+ IARA+ +P +++ DE + L+ + + L Sbjct: 136 LADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191 Query: 541 KNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574 + T L++ H + + AD + V DQG V+ G+ Sbjct: 192 RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 86.9 bits (215), Expect = 2e-17 Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 21/226 (9%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433 + ISFEI + +G +G GKST K+L L G + ++G+D + +E LR Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100 Query: 434 GIIPQDTILF-----NDTLRYN-ILYGNPNASDQE-LCAAVEVAQLKSFIMKLPNGYDTV 486 ++ Q L+ D+L ++Y P+ E L E+ L+ F+ Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-------- 152 Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR--T 544 KLS G++ R +A A+L P ++ DE T LD+ + +I+ L ++ R T Sbjct: 153 ---PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT 209 Query: 545 TLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSMW 589 L+ H I D +++ DQG +V G+ L Q G Y Sbjct: 210 VLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 86.1 bits (213), Expect = 2e-17 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 28/236 (11%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I NVS + + +S +I + AL+G SG GK+T+ +L+ L G I Sbjct: 3 IEVRNVSKRFGDFVAL-DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG--------NPNAS--DQELCA 465 G+D + + + +G + Q LF T+ N+ +G P + ++ Sbjct: 62 GGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHE 119 Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525 +++ QL + P +LSGG++QRV++ARA+ P +++ DE +LD Sbjct: 120 LLKLVQLDWLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168 Query: 526 IITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578 + ++ L L + TT+ + H + AD ++V ++G + + G+ + + Sbjct: 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 86.0 bits (213), Expect = 2e-17 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 13/210 (6%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD---IKGGIITIDGQDIKKITKES 428 I +S + + A++G SG GK+T+ + + G I +GQ K + Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQ 78 Query: 429 LRQTIGIIPQ-DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487 ++ + + Q D +L T+R + Y ++ A+ +++ +++ T + Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA--LTRI 136 Query: 488 GERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK-NRTT 545 G +K +SGGE++RVSIA +L +P ++I DE TS LD T ++ + L+ L++ NR Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196 Query: 546 LVIAH--RLSTITDADNIIVFDQGTVVESG 573 ++ H R D I++ G +V SG Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 85.9 bits (212), Expect = 3e-17 Identities = 88/454 (19%), Positives = 166/454 (36%), Gaps = 39/454 (8%) Query: 155 VVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLH 214 V ++ +L + S L Y I+ +VIL ++ I L +L Sbjct: 375 TVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISG-----LLVFFAVFILQ 429 Query: 215 ECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLG----WLNFGQGL 270 N T F+ L + + A +L G Sbjct: 430 SFA--------NGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDE 481 Query: 271 IFSIGMVIT--MIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEI 328 F ++ +I + + + V D +F L + R + + Sbjct: 482 SFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFL---------LIFVPFKRRMRALTQNML 532 Query: 329 EELLNILNEKIEIQNAVN---SKDLKIKNGH-IVFNNVSFSYNHHNCIFKGISFEIAPSK 384 + + EK+++ N + + +V NN+S Y + +G+SF + P + Sbjct: 533 KGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGE 592 Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI-KKITKESLRQTIGIIPQDTILF 443 L+G +G GK+T K+L G I G DI + +R+ +G PQ L+ Sbjct: 593 CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALW 652 Query: 444 NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVS 503 + L A + L + + ++ + + G ++ SGG K+R+S Sbjct: 653 EELTGREHLE--FYARLRGLPRSDIGSAIEKLLRLVGLGPYAN--KQVRTYSGGNKRRLS 708 Query: 504 IARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDA--DNI 561 A A++ +P +I+ DE ++ LD RH+ +A L KN +++ +A Sbjct: 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRT 768 Query: 562 IVFDQGTVVESGSHENLISQGGIYTSMWKKQCES 595 + G + GS + L S+ G ++ + E Sbjct: 769 AIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKEL 802 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 85.6 bits (212), Expect = 4e-17 Identities = 67/243 (27%), Positives = 103/243 (42%), Gaps = 32/243 (13%) Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLY 407 L+IK+ H+ I KG++ + + A++G +G GKST+A + + Y Sbjct: 4 LEIKDLHV-------EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 Query: 408 DIKGGIITIDGQDIKKITKESLRQTIGI---------IPQDTILFNDTLRYNILYGNPNA 458 ++ G I DG+DI +++ + R GI IP T N G Sbjct: 57 EVTEGEILFDGEDILELSPDE-RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115 Query: 459 SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL--KLSGGEKQRVSIARAILKNPPIII 516 + + +LK L G D ER + SGGEK+R I + +L P + I Sbjct: 116 LPEF------IKELKEKAELL--GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI 167 Query: 517 FDEATSSLDIITERHIQTALATL-SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESG 573 DE S LDI + + + L + R L+I H RL D + V G +V+SG Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227 Query: 574 SHE 576 E Sbjct: 228 DPE 230 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 84.6 bits (209), Expect = 7e-17 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 17/224 (7%) Query: 356 HIVFNNVSFSYNH-HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414 + +++S SY + +S IA + ++G SG GK+T+ L+ G I Sbjct: 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62 Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFN-DTLRYNILYGNPNASDQELCAAVEVAQLK 473 ++G ++I + G++ Q+ L + N+ +G ++ Q+ Sbjct: 63 QLNG---RRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML 117 Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533 + + L + + LSGG +QRV IARA+ P +++ DE +LD +T +Q Sbjct: 118 ALV-GLEGAEHKYIWQ----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172 Query: 534 TALATLSK--NRTTLVIAHRL-STITDADNIIVFD--QGTVVES 572 L L + + L+I H + + A ++V G VVE Sbjct: 173 ELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 84.4 bits (209), Expect = 7e-17 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 10/224 (4%) Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420 N+S Y + G+S + + L+G +G GK+T ++ L G I +DGQD Sbjct: 5 NLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD 63 Query: 421 IKKIT-KESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478 I K+ + R IG +PQ+ +F T+ NIL + L +L+ + + Sbjct: 64 ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV---LEIRGLSKKEREEKLEELLEE 120 Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538 + + LSGGE++RV IARA+ NP ++ DE + +D I + IQ + Sbjct: 121 F--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178 Query: 539 LSKNRTTLVIA-HRLS-TITDADNIIVFDQGTVVESGSHENLIS 580 L ++I H + T++ D + +G V+ G+ E + + Sbjct: 179 LKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 84.6 bits (209), Expect = 7e-17 Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 8/237 (3%) Query: 350 LKIKNGHIVFNNVS--FSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLY 407 L+++N F + F + K +SF + + A+IGE+G GKST+AK+L + Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAV-KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 Query: 408 DIKGGIITIDGQDIKKITKESLRQTIGIIPQD-TILFNDTLRYNILYGNPNASDQELCAA 466 + G I I+ + + I +I QD N LR + P + +L Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE 123 Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 Q+ +++ L+ G+KQRV++ARA++ P III DEA +SLD+ Sbjct: 124 QRRKQIFE-TLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182 Query: 527 ITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580 + + L + + + + + + I +D ++V +G VVE GS ++++ Sbjct: 183 SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239 >gnl|CDD|144311 pfam00664, ABC_membrane, ABC transporter transmembrane region. This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 275 Score = 84.3 bits (209), Expect = 9e-17 Identities = 48/282 (17%), Positives = 112/282 (39%), Gaps = 8/282 (2%) Query: 31 IIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVN 90 ++ + +I + L P LL +SLI+ + +++ ++I + V+ Sbjct: 1 LLIGILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVG------VLQ 54 Query: 91 LISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMI 150 + +L +GQ L+ ++ + L F VG+L+S ++N + I Sbjct: 55 GLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDG 114 Query: 151 IRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMN 210 + + ++ + ++Y YG ++ + L + + + + L++K Sbjct: 115 LGDKLGLFFQSLATVVGGLIVMFY-YGWKLTLVLLAILPLLILLSAVLAKILRKLNRKEQ 173 Query: 211 NLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGL 270 + + ++L T++ F E++E+ R +K + +++ I A G Sbjct: 174 KAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAIIAGLSFGITQF 233 Query: 271 IFSIGMVITM-IISSHAVYIGEQTVGDFVFINTLLTQLAIPL 311 I + + + +V G +VG +L QL+ PL Sbjct: 234 ISYLSYALALWFGGYLSVISGGLSVGTVFAFLSLGLQLSGPL 275 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 83.9 bits (207), Expect = 1e-16 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 28/235 (11%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N ++ Y H +F I+ + + L+G SG GKS++ ++L L + G + I Sbjct: 3 IQLNGINCFYGAHQALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61 Query: 417 DGQ--DIKKITKE----SLRQTIGIIPQDTILF-NDTLRYNILYGNPN----ASDQELCA 465 G D K + LR+ +G++ Q L+ + T++ N++ + DQ L Sbjct: 62 AGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALAR 121 Query: 466 AVEVA---QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522 A ++ +LK + + P L LSGG++QRV+IARA++ P +++FDE T+ Sbjct: 122 AEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170 Query: 523 SLDIITERHIQTALATLSK-NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSH 575 +LD I + + L++ T +++ H + A ++ + G +VE G Sbjct: 171 ALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 82.6 bits (204), Expect = 2e-16 Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 26/232 (11%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + F NVS Y+ + K +SF I + A++G +G GKST+ KLL G + + Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381 Query: 417 DGQDIKKITKESLRQTIGIIPQD--TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474 G+ +K IG Q + + T+ + G P+ +QE+ A L Sbjct: 382 -GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV-----RAYLGR 425 Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534 F + LSGGEK R+ +A+ +L+ P +++ DE T+ LDI + ++ Sbjct: 426 FGFT-----GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480 Query: 535 ALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIY 585 AL T L+++H + A I + + G +E+ + Q Sbjct: 481 ALLDFEG--TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530 Score = 82.2 bits (203), Expect = 3e-16 Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 50/264 (18%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N+S +Y + + +S + P ++ L+G +G GKST+ K+L + G +T Sbjct: 4 ITLENLSLAYGDRP-LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475 +G + Q+ L T+ ++ G + A L Sbjct: 63 PKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADP 111 Query: 476 IMKLPNGYDTVVGE--------------RGLK----------LSGGEKQRVSIARAILKN 511 +L + ++ E GL LSGG ++RV++ARA+L+ Sbjct: 112 DDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEE 171 Query: 512 PPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF-DQGTVV 570 P +++ DE T+ LD+ + ++ L T +V++H + + I+ D+G Sbjct: 172 PDLLLLDEPTNHLDLESIEWLEDYLK--RYPGTVIVVSHDRYFLDNVATHILELDRG--- 226 Query: 571 ESGSHENLISQGGIYTSMWKKQCE 594 L G Y+S + +Q Sbjct: 227 ------KLTPYKGNYSS-YLEQKA 243 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 81.6 bits (202), Expect = 5e-16 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 64/203 (31%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT-KESLRQT 432 G+S + + AL+GE+G GKST+ K+L LY G I +DG+++ + +++ R Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG 76 Query: 433 IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492 I ++ Q L VGER Sbjct: 77 IAMVYQ----------------------------------------LS------VGER-- 88 Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL----SKNRTTLVI 548 Q V IARA+ +N ++I DE T++L T ++ + ++ + I Sbjct: 89 -------QMVEIARALARNARLLILDEPTAAL---TPAEVERLFKVIRRLRAQGVAVIFI 138 Query: 549 AHRLSTITD-ADNIIVFDQGTVV 570 +HRL + + AD + V G VV Sbjct: 139 SHRLDEVFEIADRVTVLRDGRVV 161 >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 80.2 bits (198), Expect = 2e-15 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 16/236 (6%) Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412 +V N++ SY + +S E+ + L+G +G GK+T ++ L G Sbjct: 1 DMSTLVAENLAKSYKK-RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59 Query: 413 IITIDGQDIKKIT-KESLRQTIGIIPQDTILFND-TLRYNIL----YGNPNASDQELCAA 466 I +D +DI K+ + R IG +PQ+ +F T+ NI+ + E Sbjct: 60 KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119 Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 ++ A L+ F + + LSGGE++RV IARA+ NP I+ DE + +D Sbjct: 120 LD-ALLEEF------HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172 Query: 527 ITERHIQTALATL-SKNRTTLVIAHRL-STITDADNIIVFDQGTVVESGSHENLIS 580 I IQ + L + L+ H + T+ D + G V+ GS E +++ Sbjct: 173 IAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 79.7 bits (197), Expect = 2e-15 Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 49/233 (21%) Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLY 407 L+IK+ H+ I KG++ I + AL+G +G GKST+AK + + Y Sbjct: 1 LEIKDLHVSVGGKE--------ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY 52 Query: 408 DIKGGIITIDGQDIKKI-TKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAA 466 ++ G I G+DI + +E R I + Q P Sbjct: 53 EVTEGEILFKGEDITDLPPEERARLGIFLAFQ----------------YP--------PE 88 Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 + + F+ + G SGGEK+R I + +L P + I DE S LDI Sbjct: 89 IPGVKNADFLRYVNEG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137 Query: 527 ITERHIQTALATL-SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESGSHE 576 R + + L + ++ L+I H RL D + V G +V+SG E Sbjct: 138 DALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 79.6 bits (196), Expect = 2e-15 Identities = 110/595 (18%), Positives = 213/595 (35%), Gaps = 78/595 (13%) Query: 9 LRTLKKLWPYMWPANRWDLKVRIIGAMFS-VIASKFVILGIPFLLKWVTESLIEQSTASK 67 + ++ ++P+ ++ A+ + + + + I + + + +K Sbjct: 62 FQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNI-----PTKFYVALINK 116 Query: 68 TTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSH--VYKLS- 124 + + + ++N + + LY+ + T L+ YKLS Sbjct: 117 DAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSN 176 Query: 125 QRFHINYKVGKLSSAISNGIRSI-EMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSI 183 I+ +L+ + R + + ++ F + + W I+ Sbjct: 177 LDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYF 236 Query: 184 MAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRL 243 + TVI I V +K+ H+++ +N E I ++ + E R Sbjct: 237 LIGTVINKTLRGPIV-KLTV-EQEKLEGDFRYKHSRL---RVNAEEIAFYRGGQVEHQRT 291 Query: 244 EKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMII-------------SSHAVYIG 290 ++ + + + WL F + +G +++ ++ S A G Sbjct: 292 DQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSG 351 Query: 291 EQTVGDFVFIN-----TLLTQLAIPLNIL-GTIYR------------DSRQSFIEIEELL 332 + FVFI L L+ L+ L G +R Q EE L Sbjct: 352 LISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEEL 411 Query: 333 NILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALI-G 390 + + S + + I F VS S + + + + +S E+ PS + LI G Sbjct: 412 GEAEWGLSLPP--GSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEV-PSGQNLLITG 468 Query: 391 ESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYN 450 SG GK+++ ++L L+ GG +T K+ +PQ + TLR Sbjct: 469 PSGCGKTSLLRVLGGLWPSTGGKLTKPT---DGGPKDLF-----FLPQRPYMTLGTLRDQ 520 Query: 451 ILYGNPN-------ASDQELCAAVEVAQLKSFIMKLPNGYDT-VVGERGLKLSGGEKQRV 502 ++Y ASD+++ +E QL +++ G D V + LS GE+QR+ Sbjct: 521 VIYPLKAEDMDSKSASDEDILRILENVQL-GHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 Query: 503 SIARAILKNPPIIIFDEATSSLDIITE----RHIQTALATLSKNRTTLVIAHRLS 553 + AR P I DE TS++ E R + T + + HR S Sbjct: 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR------EMGITFISVGHRKS 628 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 79.1 bits (195), Expect = 3e-15 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 31/227 (13%) Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418 NV+ + + ISF + + L+G +G GK+T +++ + G + DG Sbjct: 3 VENVTKRFGRVTAL-DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61 Query: 419 QDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYGNPN----ASDQELCAAVE 468 + + + R IG +P++ L+ D L Y L G E +E Sbjct: 62 KPLD----IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE 117 Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528 +++ + +R +LS G +Q+V A++ +P ++I DE S LD + Sbjct: 118 LSEYAN--------------KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163 Query: 529 ERHIQTALATLSKNRTTLVI-AHRLSTITD-ADNIIVFDQGTVVESG 573 ++ + L++ T+++ H++ + + D +++ ++G V G Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 77.3 bits (190), Expect = 1e-14 Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 21/238 (8%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + ++ Y H + KG+S + ++IG SG GKST + + L G I + Sbjct: 7 LEVEDLHKRYGEHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65 Query: 417 DGQDIKKITK-------------ESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQE 462 +G++I+ + LR +G++ Q L++ T+ N++ + Sbjct: 66 NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125 Query: 463 LCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522 A+E A+ ++ K+ G LSGG++QRV+IARA+ P +++FDE TS Sbjct: 126 KAEAIERAE--KYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTS 181 Query: 523 SLDIITERHIQTALATLSKN-RTTLVIAHRLSTITDADNIIVF-DQGTVVESGSHENL 578 +LD + + L++ RT +V+ H + D + ++F QG + E G E + Sbjct: 182 ALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 76.0 bits (187), Expect = 3e-14 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 50/210 (23%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I N+S + + K +SFEI P + + G SG GKS++ + L L+ G I + Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476 + + +PQ L TLR ++Y Sbjct: 61 PEGE-----------DLLFLPQRPYLPLGTLREQLIY----------------------- 86 Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536 P +D V LSGGE+QR++ AR +L P + DEATS+LD +E + Sbjct: 87 ---P--WDDV-------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL---Y 131 Query: 537 ATLSKNRTTLV-IAHRLSTITDADNIIVFD 565 L + T++ + HR S D ++ D Sbjct: 132 QLLKELGITVISVGHRPSLWKFHDRVLDLD 161 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 73.4 bits (180), Expect = 2e-13 Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 29/238 (12%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 + V+ S+ + ISFE+ P + L+G +G GK+T +++ L + G IT Sbjct: 3 LEIEGVTKSFGDKKAVD-NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW 61 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYGNPNASDQELCAAVEVA 470 +G + + K IG +P++ L+ D L+Y L G P A Q+ Sbjct: 62 NGGPLSQEIK----NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-------- 109 Query: 471 QLKSFIMKLPNGYDTVVGERGLK---LSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527 +L++++ +L +VG++ K LS G +Q++ A++ P ++I DE S LD + Sbjct: 110 KLQAWLERL-----EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164 Query: 528 TERHIQTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESGSHENLISQGG 583 ++ A+ L + T++ + HR+ + + D +++ +G V G+ E++ G Sbjct: 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 73.3 bits (180), Expect = 2e-13 Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 24/215 (11%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431 K ISFEI ++ +IG +G GKST+ KL+ +Y G + + G + + + Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAPLIELG--- 97 Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491 G P+ T N LR IL D+++ +E A+L FI + Y Sbjct: 98 -AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTY-------- 148 Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS----KNRTTLV 547 S G R++ + A P I++ DE + D + L L+ KN+T ++ Sbjct: 149 ---SSGMYARLAFSVATHVEPDILLLDEVLAVGD---AAFQEKCLERLNELVEKNKTIVL 202 Query: 548 IAHRLSTITDA-DNIIVFDQGTVVESGSHENLISQ 581 ++H L I D I + G + GS E +I Sbjct: 203 VSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 73.1 bits (179), Expect = 2e-13 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 50/232 (21%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416 I+ NVSF Y+ + I+K ++F I + AL+G +G GKST+ KL+ Sbjct: 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLIT------------ 437 Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476 D++ R + +P RYN + ++Q ++ + L+ + Sbjct: 438 --GDLQPTIGMVSRHSHNKLP----------RYNQ-----HLAEQ---LDLDKSSLEFMM 477 Query: 477 MKLPNGYD-----TVVGERGLK----------LSGGEKQRVSIARAILKNPPIIIFDEAT 521 K P+ + +++G GL LS G+++RV AR +K P +++ DE T Sbjct: 478 PKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 Query: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVES 572 + LDI T + A+ ++++H I+ A+ I V + GTV + Sbjct: 538 NHLDIETIDALAEAIN--EFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 Score = 61.9 bits (150), Expect = 5e-10 Identities = 53/273 (19%), Positives = 98/273 (35%), Gaps = 51/273 (18%) Query: 346 NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYR 405 S+D+KI++ +S S+ H + K ++ E+ ++ LIG +G GKST + + Sbjct: 72 ISRDVKIES-------LSLSF-HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG 123 Query: 406 ----------LYDIKGGIITIDGQDIKKI--TKESLRQTIGIIPQDTILFND-------- 445 Y + I + Q ++ + + R+ + + +D D Sbjct: 124 REVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD 183 Query: 446 -TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504 N + + L K LSGG + R ++ Sbjct: 184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD-----------LSGGWRMRAAL 232 Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIV 563 ARA+ + P +++ DE T+ LD+ ++ LA ++++H + NII Sbjct: 233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRIILVIVSHSQDFLNGVCTNIIH 291 Query: 564 FDQGTVVESGSHENLISQGGIYTSMWKKQCESI 596 D LI G Y K + E Sbjct: 292 LDNK---------KLIYYEGNYDQYVKTRSELE 315 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 72.8 bits (179), Expect = 2e-13 Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 44/204 (21%) Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQ 431 + +SFE+ + + G G G++ +A+ L+ L G IT+DG+ + + ++++R Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 Query: 432 TIGIIPQDT----ILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487 I +P+D ++ + ++ NI L S Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA-------------------LSSL------------ 104 Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS-KNRTTL 546 LSGG +Q+V +AR + ++P ++I DE T +D+ + I + L+ + L Sbjct: 105 ------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158 Query: 547 VIAHRLSTITD-ADNIIVFDQGTV 569 +I+ L + D I+V +G + Sbjct: 159 LISSELDELLGLCDRILVMYEGRI 182 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 71.4 bits (175), Expect = 7e-13 Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 19/277 (6%) Query: 319 RDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISF 378 R R IE + L + ++ ++ + + I K IS Sbjct: 77 RIDRVELPTIEVRFSALGVEADVTYGPTLVNILSNPLESILRMLGKRKKKKIQILKDISG 136 Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYD---IKGGIITIDGQDIKKITKESLRQTIGI 435 I P + T ++G G GK+T+ K L D G IT +G D+K+ ++T+ Sbjct: 137 IIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAY 193 Query: 436 IPQDTILF-----NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK---LPNGYDTVV 487 + + F +TL + P + E+ ++A + +++K L + DT+V Sbjct: 194 NSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLV 253 Query: 488 GERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRT 544 G ++ +SGGE++RVSI ++ I+ +DE T LD T I AL L+ T Sbjct: 254 GNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGAT 313 Query: 545 TLVIAHRLS--TITDADNIIVFDQGTVVESGSHENLI 579 LV + S D++I+ +G + G + ++ Sbjct: 314 ALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 Score = 70.3 bits (172), Expect = 2e-12 Identities = 62/279 (22%), Positives = 110/279 (39%), Gaps = 37/279 (13%) Query: 263 WLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDS- 321 W NFG L F++ +I+ ++ L AI + G + Sbjct: 705 WRNFGILLGFTVFFNFVFLIALE-------------YLKPLKKSGAILVFKKGKEKKKVK 751 Query: 322 RQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHI-VFNNVSFSYNHHNC---IFKGIS 377 E L+ + + + + + L + + + ++ + + +S Sbjct: 752 SAGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVS 811 Query: 378 FEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT----IDGQDIKKITKESLRQTI 433 P TAL+GESG GK+T+ +L GG I I G +E+ + Sbjct: 812 GAFKPGVLTALMGESGAGKTTLLDVLAG--RKTGGYIEGDILISGF---PKDQETFARVS 866 Query: 434 GIIPQD-----TILFNDTLRYN-ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487 G + Q + ++LR++ L SD+E VE +++L D +V Sbjct: 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEV---IELLELKEYADALV 923 Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIF-DEATSSLD 525 G G LS +++R++I ++ NP I+F DE TS LD Sbjct: 924 GLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 69.9 bits (171), Expect = 2e-12 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 31/215 (14%) Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433 KGISF I + IG +G GK+T K+L L G + + G K K+ LR+ I Sbjct: 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR-I 96 Query: 434 GII------------PQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481 G++ D+ + Y++ EL +++ + ++ P Sbjct: 97 GVVFGQKTQLWWDLPVIDSFYLLAAI-YDLPPARFKKRLDELSELLDLEE----LLDTPV 151 Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541 +LS G++ R IA A+L P I+ DE T LD++ + +I+ L ++ Sbjct: 152 ----------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201 Query: 542 NRTTLVI--AHRLSTITD-ADNIIVFDQGTVVESG 573 R T V+ +H + I A ++V D+G ++ G Sbjct: 202 ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 69.2 bits (169), Expect = 3e-12 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 25/182 (13%) Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKST----VAKLLYRLYDIK 410 G + NVS C+ ++F IA + L+G SG GKST + L + Sbjct: 1 GMLCLKNVSLRLPGS-CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT 59 Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYGNP-----NASDQELC 464 G + ++ Q + + ++ IGI+ QD +LF ++ N+L+ P NA Sbjct: 60 GELW-LNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAAN 116 Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 AA+E + L + P LSGG++ RV++ RA+L P ++ DE S L Sbjct: 117 AALERSGLDGAFHQDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRL 165 Query: 525 DI 526 D+ Sbjct: 166 DV 167 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 68.4 bits (167), Expect = 6e-12 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 44/229 (19%) Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI---DGQDIKKIT-KES 428 + +SF++ P + ++GESG GK+T+ K + G +T DGQ T E+ Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 Query: 429 LRQTI-----GIIPQDTILFNDTLRYNIL----------------YGNPNASDQELCAAV 467 R+ + G + Q+ D LR + YGN A Q+ V Sbjct: 82 ERRRLLRTEWGFVHQNPR---DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV 138 Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527 E+ + I LP + SGG +QR+ IAR ++ P ++ DE T LD+ Sbjct: 139 EIDLDR--IDDLPRTF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 185 Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTIT-DADNIIVFDQGTVVESG 573 + + L L + +++ H L+ AD ++V QG VVESG Sbjct: 186 VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 67.3 bits (164), Expect = 1e-11 Identities = 109/512 (21%), Positives = 205/512 (40%), Gaps = 81/512 (15%) Query: 115 QVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRII---VVHLIPTILEFAISMAF 171 ++ H Y + YKV L S I N S+ I V HL + + + + Sbjct: 191 RLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLIL 250 Query: 172 LWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHE----------CHAKVF 221 + ++ D S+ A + L +T+ +S K L+ E H+ + Sbjct: 251 ISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNI- 309 Query: 222 DTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNF-----------GQGL 270 + N E I ++ K E+ ++++ ++ E + W G GL Sbjct: 310 --ITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGL 367 Query: 271 IF-SIGMVITMIISSHAVYIGEQTVG---DFVFINTLLTQLAIPLNILGTIYRDSRQ--- 323 + SI ++ + + S + + E+ +F+ LL A + L + Y++ Q Sbjct: 368 VMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAG 427 Query: 324 SFIEIEELLNILNE-------------------KIEIQNAVN-SKDLKIKNGH-IVFNNV 362 + + ++L++ E +N+ I+N + I+ N+ Sbjct: 428 YTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENI 487 Query: 363 SFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK 422 + + ++F+I P + G +G GKS++ ++L L+ + G+++I Sbjct: 488 PVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI------ 541 Query: 423 KITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA---------SDQELCAAVEVAQLK 473 I IPQ + TLR I+Y P++ +DQ+L A +++ L+ Sbjct: 542 -----PRPNNIFYIPQRPYMSGGTLRDQIIY--PDSSEQMKRKGYTDQDLEAILDIVHLE 594 Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533 I++ G+D V + + LSGGEKQR+ +AR P + DE TS++ I E I Sbjct: 595 -HILQREGGWDAVRDWKDV-LSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIF 652 Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFD 565 A + L I HR S +++ FD Sbjct: 653 QAAKDAGIS--LLSITHRPSLWKYHTHLLEFD 682 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 66.7 bits (163), Expect = 2e-11 Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 18/204 (8%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431 K +SFE+ ++ LIG +G GKST+ +LL +Y G +T+ G+ L Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-----SSLLGL 91 Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491 G P+ T N L +L + D+++ +E ++L FI D V Sbjct: 92 GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------DLPVKT-- 142 Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA-H 550 S G K R++ A A P I++ DE + D + Q L L K T+++ H Sbjct: 143 --YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200 Query: 551 RLSTITD-ADNIIVFDQGTVVESG 573 S+I D +V ++G + G Sbjct: 201 DPSSIKRLCDRALVLEKGKIRFDG 224 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 65.7 bits (160), Expect = 4e-11 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 36/197 (18%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI--DGQDIKKITKESL 429 + + +S + + L G SG GKST+ + LY Y G I + +G+ + +T E Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85 Query: 430 ------RQTIG-------IIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476 R TIG +IP+ + L D + +L AA + +L Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSAL--DVVAEPLLARGVPREVARAKAADLLTRLN--- 140 Query: 477 MKLPNGYDTVVGERGLKL-----SGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531 + ER L SGGE+QRV+IAR + + PI++ DE T+SLD T R Sbjct: 141 ----------LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD-ATNRA 189 Query: 532 IQTALATLSKNRTTLVI 548 + L +K R ++ Sbjct: 190 VVVELIREAKARGAALV 206 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 64.9 bits (158), Expect = 6e-11 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 23/190 (12%) Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438 I+ S+ ++G +G+GK+T K+L G++ D DI E T+ PQ Sbjct: 21 SISESEVIGILGPNGIGKTTFIKML-------AGVLKPDEGDI-----EIELDTVSYKPQ 68 Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498 + ++L K+ I K P + ++ +LSGGE Sbjct: 69 YIKADYEGTVRDLLSSITKDF-------YTHPYFKTEIAK-PLQIEQILDREVPELSGGE 120 Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA--TLSKNRTTLVIAHRLSTIT 556 QRV+IA + K+ I + DE ++ LD+ + + +T V+ H + I Sbjct: 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 Query: 557 D-ADNIIVFD 565 AD +IVF+ Sbjct: 181 YLADRLIVFE 190 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 64.6 bits (157), Expect = 6e-11 Identities = 65/240 (27%), Positives = 99/240 (41%), Gaps = 48/240 (20%) Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLL--------------YRLYDIKGGIIT----- 415 +S + + L+GESG GKS +AK + R DI ++ Sbjct: 25 RVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 Query: 416 -IDGQDIKKITKESL----------RQTIGIIPQDTILFNDTLRYNILYGNPNASDQELC 464 + G ++ I +E RQ I IP T R+ +G EL Sbjct: 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTY----KGRWWQRFGWRKRRAIELL 140 Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524 V + K + P +L+ GE Q+V IA A+ P ++I DE T+S+ Sbjct: 141 HRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNSM 189 Query: 525 DIITERHIQTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581 + T+ I L+ L++N T L+I+H L I+ AD I V G VES E L++ Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 64.7 bits (158), Expect = 7e-11 Identities = 71/253 (28%), Positives = 107/253 (42%), Gaps = 41/253 (16%) Query: 346 NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL-- 403 N L+IKN H N N I KG++ I + A++G +G GKST++K++ Sbjct: 4 NKPILEIKNLHASVNE--------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 Query: 404 YRLYDIKGGIITIDGQDIKKITKESLRQTIGI---------IPQDTILFN-DTLR--YN- 450 + Y I G I G+ I + E R +GI IP + N D LR YN Sbjct: 56 HPAYKILEGDILFKGESILDLEPE-ERAHLGIFLAFQYPIEIPGVS---NADFLRLAYNS 111 Query: 451 --ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK--LSGGEKQRVSIAR 506 G P +E ++ + +KL D R + SGGEK+R I + Sbjct: 112 KRKFQGLPELD------PLEFLEIINEKLKLVG-MDPSFLSRNVNEGFSGGEKKRNEILQ 164 Query: 507 AILKNPPIIIFDEATSSLDIITERHIQTALATLS-KNRTTLVIAH--RLSTITDADNIIV 563 L + + I DE S LDI + I + L + ++I H RL D + V Sbjct: 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHV 224 Query: 564 FDQGTVVESGSHE 576 G ++++G E Sbjct: 225 MQNGKIIKTGDAE 237 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 63.2 bits (153), Expect = 2e-10 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 45/221 (20%) Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419 ++V+F Y +FK + F I + A++G +GVGKST+ KLL G + DG+ Sbjct: 590 HDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLI------GKLDPNDGE 643 Query: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479 +++ R IG ++ ++ VE Q K L Sbjct: 644 -----LRKNHRLRIG-------------WFDQHANEALNGEE---TPVEYLQRK---FNL 679 Query: 480 P-NGYDTVVGERGL----------KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528 P +G GL LSGG+K RV++A L P ++I DE T++LDI Sbjct: 680 PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI-- 737 Query: 529 ERHIQTALATLSKNRTTLVIAH--RLSTITDADNIIVFDQG 567 E A A N ++++H RL TD + +V +QG Sbjct: 738 ESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQG 778 Score = 52.0 bits (124), Expect = 4e-07 Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 47/246 (19%) Query: 346 NSKDLKIKNGHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAK-LL 403 N+ D+KI+N F + +F S I ++ L+G +G+GK+T+ K + Sbjct: 261 NAMDIKIEN---------FDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIA 311 Query: 404 YRLYDIKGGI-ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNIL---------- 452 R I I + + Q++ + ++ DT+L D R +L Sbjct: 312 ARALAIPPNIDVLLCEQEVVADSTSAI---------DTVLKADKKRLALLEEEAKLMSQI 362 Query: 453 -YGNPNASDQ---------ELCAAVEVAQLKSFIMKLPNGYDTVVGERGL-KLSGGEKQR 501 G+ A+++ + A A+ + + L G+ + ER K SGG + R Sbjct: 363 EEGDTTAAERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTTKFSGGWRMR 420 Query: 502 VSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDA-DN 560 VS+ARA+ P +++ DE T+ LD+ + L K T L+++H + + Sbjct: 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQGFLDSVCTD 478 Query: 561 IIVFDQ 566 II D Sbjct: 479 IIHLDN 484 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 62.9 bits (153), Expect = 3e-10 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 35/209 (16%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG---GIITIDGQDIKKITKES 428 I K S + P + ++G G G ST+ K L + G I +G K+ + Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE-- 79 Query: 429 LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488 I++ + D + V + F ++ G + V G Sbjct: 80 -------KYPGEIIYV------------SEEDVHF-PTLTVRETLDFALRC-KGNEFVRG 118 Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTL 546 +SGGE++RVSIA A++ ++ +D +T LD T I + T++ TT Sbjct: 119 -----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTF 173 Query: 547 VIAHRLS-TITDA-DNIIVFDQGTVVESG 573 V ++ S I D D ++V +G + G Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 60.6 bits (147), Expect = 1e-09 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 35/195 (17%) Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438 EI + ++G +G+GK+T KLL G+I D + + Q I Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLKVSYKPQYISPDYD 415 Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK---LPNGYDTVVGERGLKLS 495 T+ ++L + A + K+ I+K L + + V E LS Sbjct: 416 GTV-------EDLLRSAIRS-------AFGSSYFKTEIVKPLNLEDLLERPVDE----LS 457 Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA----TLSKNRTTLVIAHR 551 GGE QRV+IA A+ + + + DE ++ LD+ E+ I A + +T LV+ H Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDV--EQRIIVAKVIRRFIENNEKTALVVDHD 515 Query: 552 LSTITD-ADNIIVFD 565 + I +D +IVF+ Sbjct: 516 IYMIDYVSDRLIVFE 530 Score = 56.8 bits (137), Expect = 2e-08 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%) Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES-LRQTIGIIPQD- 439 P K ++G +G+GKST K+L G + G+ + + +++ G Q+ Sbjct: 99 PGKVVGILGPNGIGKSTALKIL------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152 Query: 440 -TILFNDTLR--YNILYGN--PNASDQE----LCAAVEVAQLKSFIMKLPNGYDTVVGER 490 L+ LR + Y + P + L E + + +L G + V+ Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL--GLENVLDRD 210 Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-RTTLVIA 549 +LSGGE QRV+IA A+L++ + FDE +S LDI + + L+++ + +V+ Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVE 270 Query: 550 HRLSTI 555 H L+ + Sbjct: 271 HDLAVL 276 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 60.4 bits (146), Expect = 1e-09 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431 +F G+SF +A + + G +G GK+T+ ++L L G + ++G + R Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491 + + I ++ N+ + + + SD+++ A+ L F P Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVAQ-------- 125 Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537 LS G+++RV++AR +L P+ I DE T++LD A+A Sbjct: 126 --LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA 169 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 59.9 bits (145), Expect = 2e-09 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 24/164 (14%) Query: 370 NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429 +F +SF + + + G +G GK+T+ ++L L G + G+ I+ + +ES Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESY 73 Query: 430 RQTI-------GIIPQDTILFNDTLR-YNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481 Q + GI + T L N L + +G+ NA+ + A+ L LP Sbjct: 74 HQALLYLGHQPGIKTELTALEN--LHFWQRFHGSGNAAT--IWEALAQVGLAGLE-DLPV 128 Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525 G LS G+++RV++AR L P+ I DE ++LD Sbjct: 129 GQ----------LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 59.9 bits (145), Expect = 2e-09 Identities = 68/317 (21%), Positives = 112/317 (35%), Gaps = 71/317 (22%) Query: 243 LEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSH----AVYIG-------- 290 LE Y+ +K +++ V+ +LN V T II Y G Sbjct: 237 LENYLQTWKITSLIVSHDRNFLN----------TVCTDIIHLENLKLDYYKGNYSQFVKT 286 Query: 291 ---EQTVGDFVFINTLLTQLAIPLNILGTIYRDSR----QSFIEIEELLNILNE---KIE 340 + F + + + + I Y +R QS I++ L L ++ Sbjct: 287 KPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVL 346 Query: 341 IQNAVNSKDLKIKNGHIVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTV 399 I ++ + ++ + V+F Y K + + + + +GE+G GKST+ Sbjct: 347 IGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTL 406 Query: 400 AKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNAS 459 K I+ D + I R I Q + D L N+ Sbjct: 407 LK-----------ILKGDLTPTRGIVGRHPRLRIKYFAQHHV---DFLDKNV-------- 444 Query: 460 DQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK----------LSGGEKQRVSIARAIL 509 AV+ + KSF K +G GL LSGG+K RV+ A Sbjct: 445 -----NAVDFME-KSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTW 498 Query: 510 KNPPIIIFDEATSSLDI 526 NP +++ DE T+ LD Sbjct: 499 NNPHLLVLDEPTNHLDR 515 Score = 54.6 bits (131), Expect = 7e-08 Identities = 43/199 (21%), Positives = 91/199 (45%), Gaps = 23/199 (11%) Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412 K+ I +N +Y + + ++ ++ L+G +G+GKST+ + + Sbjct: 77 KSKDIHIDNFDLAYGGKI-LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------- 128 Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472 + E + ++L +DT R + L A ++EL A + + ++ Sbjct: 129 ------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFL-----AEEKELLAGLTLEEI 177 Query: 473 KSFIMKLPNGYDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531 I+ G+ + + K LSGG + R+++ARA+ P +++ DE T+ LD++ Sbjct: 178 YDKILA-GLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAW 236 Query: 532 IQTALATLSKNRTTLVIAH 550 ++ L T T+L+++H Sbjct: 237 LENYLQTWKI--TSLIVSH 253 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 58.5 bits (141), Expect = 5e-09 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 25/218 (11%) Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL-RQTIG 434 +S E+ + L+G +G GKST+ + + G I GQ ++ + L R Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQ-FAGQPLEAWSATELARHRAY 76 Query: 435 IIPQDTILFN-DTLRYNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTVVGERGL 492 + Q T F Y L+ D+ + +VA + KL + Sbjct: 77 LSQQQTPPFAMPVWHYLTLH----QPDKTRTELLNDVAGALALDDKLGRSTN-------- 124 Query: 493 KLSGGEKQRVSIARAILK-----NPP--IIIFDEATSSLDIITERHIQTALATLSKNRTT 545 +LSGGE QRV +A +L+ NP +++ DE +SLD+ + + L+ L + Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLA 184 Query: 546 LVIA-HRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581 +V++ H L+ T+ A + +G ++ SG E +++ Sbjct: 185 IVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 55.8 bits (134), Expect = 3e-08 Identities = 35/179 (19%), Positives = 77/179 (43%), Gaps = 7/179 (3%) Query: 351 KIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410 + + I + + F Y + IF + ++ + L+G +G GK+T+ K+L + + Sbjct: 8 AVSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG 67 Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470 GG++ + G+ SL + + + + S + + V Sbjct: 68 GGVVQVLGRS--AFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD 125 Query: 471 --QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527 + + ++ + D + R K+S G+++RV I +LK +++ DE T LD++ Sbjct: 126 DPERREKLIDI---LDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVL 181 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 54.6 bits (131), Expect = 7e-08 Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 18/206 (8%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431 + + ++ EI P A++G+SG GK+T+ +++ +G ++ K ++ Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457 Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491 I + L + L +L AAVE+ ++ + D V+ R Sbjct: 458 LIPGEYEPEFGEVTILEH--LRSKTG----DLNAAVEILN-RAGLS------DAVLYRRK 504 Query: 492 L-KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT-TLVIA 549 +LS G+K+R +A+ + + P +++ DE + LD +T + ++ L++ TL++ Sbjct: 505 FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564 Query: 550 HRLSTITDA---DNIIVFDQGTVVES 572 + +A D +I+ G V + Sbjct: 565 THRPEVGNALRPDTLILVGYGKVPVN 590 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 54.9 bits (132), Expect = 7e-08 Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 55/216 (25%) Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITK 426 N HN + + I + + G SG GKST+ + + K Sbjct: 7 NVHN--LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-----------------EGLYASGK 47 Query: 427 ESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486 L + ++ ++F D L F++ + GY T+ Sbjct: 48 ARLISFLPKFSRNKLIFIDQL--------------------------QFLIDVGLGYLTL 81 Query: 487 VGERGLKLSGGEKQRVSIARAILKNPP--IIIFDEATSSLDIITERHIQTALATL-SKNR 543 G++ LSGGE QRV +A + PP + I DE ++ L + + L Sbjct: 82 -GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140 Query: 544 TTLVIAHRLSTITDADNIIVF------DQGTVVESG 573 T ++I H L ++ AD II F G VV SG Sbjct: 141 TVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 54.6 bits (131), Expect = 8e-08 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%) Query: 480 PNGYDT-------VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532 PNG + V + + LSGGE QRV+IA A+L+N +FDE ++ LDI + Sbjct: 51 PNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNA 110 Query: 533 QTALATLSKN--RTTLVIAHRLSTITD-ADNIIVFD 565 A+ LS+ +T LV+ H L+ + +D I VF+ Sbjct: 111 ARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 54.0 bits (130), Expect = 1e-07 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 10/109 (9%) Query: 494 LSGGEKQRVSIARAILK---NPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIA 549 LSGGE QRV +A+ + K + I DE T+ L + + L L K T +VI Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882 Query: 550 HRLSTITDADNIIVF------DQGTVVESGSHENLISQGGIYTSMWKKQ 592 H L I AD II G +V SG+ E + YT + K+ Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931 Score = 39.4 bits (92), Expect = 0.003 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 21/111 (18%) Query: 494 LSGGEKQRVSIARAILKN--PPIIIFDEATSSLDIITERHIQTALATLSKNR----TTLV 547 LSGGE QR+ +A I + + DE + L +R + + TL + R T +V Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH---QRDNERLIETLKRLRDLGNTVIV 538 Query: 548 IAHRLSTITDADNII-------VFDQGTVVESGSHENLI----SQGGIYTS 587 + H TI AD+II G +V G+ E L+ S G Y S Sbjct: 539 VEHDEDTIRAADHIIDIGPGAGEHG-GEIVAEGTPEELLANPESLTGQYLS 588 Score = 27.8 bits (62), Expect = 9.6 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVA 400 HN K I EI +K + G SG GKS++A Sbjct: 14 HN--LKNIDLEIPRNKLVVITGLSGSGKSSLA 43 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 52.9 bits (127), Expect = 2e-07 Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 48/240 (20%) Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKST---------VAKLLYRLYDIKGGIITID 417 +N K I +I T + G SG GKS+ +A+ L+ + G I+ Sbjct: 7 RENN--LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIE 64 Query: 418 G-QDIKKITKESLRQTIGIIPQ----------DTI--LFNDTL---RYN-----ILYGNP 456 G + I K+ + IG P+ D I LF + RYN + Y Sbjct: 65 GLEHIDKVIVID-QSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGK 123 Query: 457 NASD---QELCAAVE-------VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIAR 506 + +D + A+E +A+ + + GY + G+ LSGGE QR+ +A+ Sbjct: 124 SIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKL-GQPATTLSGGEAQRIKLAK 182 Query: 507 AILK---NPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNII 562 + K + I DE T+ L + + L L K T +VI H L I AD II Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 52.4 bits (126), Expect = 4e-07 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRL 552 +LSGGEK R+++A+ +L+NP +++ DE T+ LD+ + ++ AL T ++++H Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR 127 Query: 553 STITD-ADNIIVFDQGT 568 + A II + G Sbjct: 128 YFLDQVATKIIELEDGK 144 Score = 45.8 bits (109), Expect = 4e-05 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLY-RLYDIKGGIIT 415 I N+S +Y + K IS I P + L+G +G GKST+ KL+ L +G + Sbjct: 1 IELENLSKTYGGKL-LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59 Query: 416 IDGQDI 421 I Sbjct: 60 GSTVKI 65 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 51.0 bits (122), Expect = 1e-06 Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 44/202 (21%) Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDIKGGIITIDGQDIKKITKESL 429 + IS + P TAL+GESG GK+T+ +L + + G I I+G+ + K + Sbjct: 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NF 77 Query: 430 RQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488 +++ G + Q + N T+R + + A L Sbjct: 78 QRSTGYVEQQDVHSPNLTVREALRFS---------------ALL---------------- 106 Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-RTTLV 547 RGL + +++R++I + P I+ DE TS LD +I L L+ + + L Sbjct: 107 -RGLSVE--QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163 Query: 548 IAHRLS--TITDADNIIVFDQG 567 H+ S D +++ +G Sbjct: 164 TIHQPSASIFEKFDRLLLLKRG 185 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 50.7 bits (121), Expect = 1e-06 Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 48/200 (24%) Query: 382 PSKKTALIGESGVGKSTVAKLL-----------------------YRLYDIKGGIITIDG 418 P + L+G +G+GKST K+L +R +++ I Sbjct: 99 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILE 158 Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478 ++K I K Q + IP+ T+ + + + +E+C +++ L Sbjct: 159 DNLKAIIKP---QYVDQIPR---AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLL----- 207 Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL-- 536 D V + LSGGE QR +IA ++ + +FDE +S LD+ ++ ++ A+ Sbjct: 208 -----DREVEQ----LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV--KQRLKAAITI 256 Query: 537 -ATLSKNRTTLVIAHRLSTI 555 + ++ +R +V+ H LS + Sbjct: 257 RSLINPDRYIIVVEHDLSVL 276 Score = 39.5 bits (92), Expect = 0.003 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%) Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTL 447 ++GE+G GK+T ++L G + D + S + I P+ L Sbjct: 372 MLGENGTGKTTFIRML-------AGRLKPDEGGEIPVLNVSYK-PQKISPKREGTVRQLL 423 Query: 448 RYNI--LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIA 505 I Y +P Q + +MK P + ++ + LSGGE QRV++A Sbjct: 424 HTKIRDAYMHP--------------QFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALA 468 Query: 506 RAILKNPPIIIFDEATSSLDIITERHIQTALA--TLSKNRTTLVIAHRLSTITD-ADNII 562 + K + + DE ++ LD + L +T V+ H T AD +I Sbjct: 469 LCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 528 Query: 563 VFD 565 VF+ Sbjct: 529 VFE 531 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 48.3 bits (115), Expect = 6e-06 Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 49/208 (23%) Query: 381 APSKKTALIGESGVGKSTVAKLL-----------------------YRLYDIKGGIITID 417 + L+G +G+GKST K+L +R +++ + Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83 Query: 418 GQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIM 477 D+K I K Q + +IP+ + + + EL +E+ + Sbjct: 84 EGDVKVIVKP---QYVDLIPKA---VKGKVGELLKKKDERGKLDELVDQLELRHVL---- 133 Query: 478 KLPNGYDTVVGERGL-KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536 +R + +LSGGE QRV+IA A+ ++ FDE +S LDI + + Sbjct: 134 -----------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182 Query: 537 ATLSKN-RTTLVIAHRLSTITD--ADNI 561 L+++ LV+ H L+ + D +D I Sbjct: 183 RELAEDDNYVLVVEHDLA-VLDYLSDYI 209 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 47.2 bits (112), Expect = 1e-05 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 35/220 (15%) Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ-DIKKITKESLR---- 430 +SF + P + LIG +G GK+T+ ++ + G + DG D+ K+ + + Sbjct: 24 LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 Query: 431 ----QTIGIIPQDTILFNDTLRYNI-----------LYGNPNASDQELCAAVEVAQLKSF 475 Q + T+ N L N L EL A + + + Sbjct: 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR 143 Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535 + L LS G+KQ + I + ++P +++ DE + + Sbjct: 144 LAAL--------------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAEL 189 Query: 536 LATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574 L +L+ + LV+ H + + + AD + V +G+V+ GS Sbjct: 190 LKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229 >gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]. Length = 1163 Score = 46.6 bits (110), Expect = 2e-05 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 494 LSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549 LSGGEK ++A AI K P P + DE ++LD + + +SK +VI Sbjct: 1067 LSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126 Query: 550 HRLSTITDADNII 562 HR T+ AD ++ Sbjct: 1127 HRKGTMEAADRLV 1139 >gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 197 Score = 43.5 bits (103), Expect = 2e-04 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 494 LSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549 LSGGEK ++A AI + P P + DE ++LD L SK +VI Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173 Query: 550 HRLSTITDADNII 562 HR T+ AD + Sbjct: 174 HRKGTMEAADRLY 186 >gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226 Score = 41.3 bits (97), Expect = 7e-04 Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 53/235 (22%) Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVA-KLLY----RLYD------IKGGIITID 417 HN K + +I +K + G SG GKS++A +Y R Y + + +D Sbjct: 9 HN--LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMD 66 Query: 418 GQDIKKI-------------TKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELC 464 D+ I T + R T+G + + D LR +L+ Sbjct: 67 KPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTE----IYDYLR--LLF----------- 109 Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN--PPIIIFDEATS 522 A V + + F++ + GY T+ LSGGE QR+ +A I + + DE + Sbjct: 110 ARVGIRERLGFLVDVGLGYLTLSRSAP-TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 168 Query: 523 SLDIITERHIQTALATLSKNR----TTLVIAHRLSTITDADNIIVFDQGTVVESG 573 L R + TL + R T LV+ H TI AD++I G V G Sbjct: 169 GLH---PRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGG 220 >gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 Score = 39.2 bits (91), Expect = 0.003 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 12/77 (15%) Query: 494 LSGGEKQRVSIA--RAILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTT---- 545 LSGGEK V++A AI K P P + DE ++LD ++++ +A K + Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALD---DQNVS-RVANYLKELSKNAQF 1134 Query: 546 LVIAHRLSTITDADNII 562 +VI+ R + AD ++ Sbjct: 1135 IVISLREEMLEKADRLV 1151 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 36.7 bits (85), Expect = 0.018 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 15/81 (18%) Query: 494 LSGGEKQ------RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL------SK 541 SGGEK R+++A N I+ DE T++LD E +I+ +LA + K Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQK 172 Query: 542 NRTTLVIAHRLSTITDADNII 562 N +VI H + AD+I Sbjct: 173 NFQLIVITHDEELVDAADHIY 193 >gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain. Length = 168 Score = 36.2 bits (85), Expect = 0.030 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406 +AP+ T LI GESG GK A+ +++L Sbjct: 18 VAPTDATVLITGESGTGKELFARAIHQL 45 >gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.. Length = 162 Score = 35.3 bits (81), Expect = 0.047 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%) Query: 492 LKLSGGEKQRVSIARAI----LKNPPIIIFDEATSSLDIITERHIQTALA-TLSKNRTTL 546 L+LSGGEK+ ++A + LK P+ I DE LD + + A+ L K + Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135 Query: 547 VIAHRLSTITDADNII 562 VI H AD +I Sbjct: 136 VITHLPELAELADKLI 151 >gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 276 Score = 35.2 bits (81), Expect = 0.054 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 494 LSGGEKQRVSIA-RAIL---KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549 SGGE R+ +A +AIL P +IFDE + + + + L LS++ L I Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCIT 230 Query: 550 H 550 H Sbjct: 231 H 231 >gnl|CDD|32858 COG3044, COG3044, Predicted ATPase of the ABC class [General function prediction only]. Length = 554 Score = 34.6 bits (79), Expect = 0.085 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527 FI LP G DT G SG I AI ++ DE TS+ +++ Sbjct: 303 FINHLPGGKDTPDFVTGDA-SGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLL 354 >gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 908 Score = 34.3 bits (78), Expect = 0.100 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 15/69 (21%) Query: 494 LSGGEKQRVSIARAI--------LKNPPIIIFDEATSSLDIITERHIQTALATL----SK 541 LSGGE+ S+A + ++ DE +LD E ++ L S Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLD---EERLEKLAEILEELLSD 872 Query: 542 NRTTLVIAH 550 R ++I+H Sbjct: 873 GRQIIIISH 881 >gnl|CDD|36349 KOG1134, KOG1134, KOG1134, Uncharacterized conserved protein [General function prediction only]. Length = 728 Score = 34.2 bits (78), Expect = 0.10 Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 8/100 (8%) Query: 8 SLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKW-------VTESLI 60 +L L K++P++ P +I +A + +P L++ ++ S Sbjct: 386 NLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEE 445 Query: 61 EQSTASKTTSYLTIGIVILITSYGT-MRVVNLISNHIRDF 99 E+S +K +L + + +++T G+ +R + I + R Sbjct: 446 ERSALNKYYIFLLVNVFLVVTLSGSALRQLLSILSTPRLI 485 >gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion]. Length = 407 Score = 33.4 bits (76), Expect = 0.19 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Query: 382 PSKKTALIGESGVGKST-VAKLLYRLYDIKG----GIITID 417 + AL+G +GVGK+T +AKL R +K IIT D Sbjct: 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD 242 >gnl|CDD|33404 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]. Length = 550 Score = 33.0 bits (75), Expect = 0.26 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406 +A S T LI GE+G GK VA+ +++L Sbjct: 242 VAKSDSTVLIRGETGTGKELVARAIHQL 269 >gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]. Length = 4600 Score = 32.0 bits (72), Expect = 0.49 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 6/138 (4%) Query: 282 ISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEI 341 + AV + F + + ++ L I QS + L +I+I Sbjct: 369 LFEEAVDCFGAFIPHFRSLLKIKKRMGSSLGIGVEERLRLYQSVPNVLNL----KHEIDI 424 Query: 342 QNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAK 401 +K +I + N+ +F+ + + + + + I ++ T L+GE+G GK+T+ + Sbjct: 425 GRCALTK-TEIPIISLSGNSFAFT-SCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQ 482 Query: 402 LLYRLYDIKGGIITIDGQ 419 L K +I Q Sbjct: 483 YLALKLHFKLTVINKSQQ 500 >gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]. Length = 464 Score = 31.8 bits (72), Expect = 0.54 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406 +APS + LI GESG GK VA+ +++ Sbjct: 160 VAPSDASVLITGESGTGKELVARAIHQA 187 >gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]. Length = 1856 Score = 31.9 bits (72), Expect = 0.57 Identities = 12/48 (25%), Positives = 25/48 (52%) Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414 + + I+ + ++ L+GE+GVGK++V + L L K ++ Sbjct: 49 RSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVV 96 >gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and metabolism]. Length = 172 Score = 31.7 bits (72), Expect = 0.59 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 382 PSKKTALIGESGVGKSTVAKLL-----YRLYDIKGGIITIDGQDIKKITKE 427 + LIG G GKST+ + L D I G I +I +E Sbjct: 1 RNMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEE 51 >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.. Length = 151 Score = 31.3 bits (71), Expect = 0.78 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKKITKES 428 L G G GK+T+A+ + L+ + ++ D+ + + Sbjct: 24 LYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA 65 >gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA processing and modification]. Length = 567 Score = 31.4 bits (71), Expect = 0.79 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 510 KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT-LVIAHRLSTITD 557 ++ I++ DEA LD+ E + T L+ L K R T L A + + D Sbjct: 156 RSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVED 204 >gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.. Length = 154 Score = 31.3 bits (71), Expect = 0.85 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Query: 387 ALIGESGVGKSTVAKLL-----YRLYDIKGGIITIDGQDIKKITKE 427 LIG G GK+TV +LL D+ I G I +I E Sbjct: 3 VLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAE 48 >gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]. Length = 403 Score = 31.1 bits (70), Expect = 0.89 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRLY 407 APS LI GE+G GK A+L++ L Sbjct: 97 YAPSGLPVLIIGETGTGKELFARLIHALS 125 >gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]. Length = 222 Score = 30.9 bits (70), Expect = 0.98 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 41/146 (28%) Query: 387 ALIGESGVGKSTVAKLL--------------YRLYDIKGGIITIDGQDIKKITKESLRQT 432 A+ G +G GKSTVAK+L YR + +D D + + Sbjct: 8 AIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELD 67 Query: 433 IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492 I + D + N + EV S + +P + +V Sbjct: 68 ISFVNDDRVFLNGEDVSEEIRTE------------EVGNAASKVAAIPEVREALV----- 110 Query: 493 KLSGGEKQRVSIARAILKNPPIIIFD 518 + Q RA KN P I+ D Sbjct: 111 -----KLQ-----RAFAKNGPGIVAD 126 >gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit [Posttranslational modification, protein turnover, chaperones]. Length = 786 Score = 31.0 bits (70), Expect = 0.99 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKKITKESLRQTIGIIP 437 +G +GVGK+ +AK L L+ + +I ID + + K S+ + IG P Sbjct: 526 FLGPTGVGKTELAKALAEALFGDEQALIRIDMSE--YMEKHSVSRLIGAPP 574 >gnl|CDD|31539 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]. Length = 278 Score = 30.6 bits (69), Expect = 1.1 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443 ++ A+ G+ G+GKST ++ L G + I G D K +S R +G T+L Sbjct: 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPK---ADSTRLLLGGKAIPTVL- 57 Query: 444 NDTLRYNILYGNPNASD 460 DTLR + D Sbjct: 58 -DTLREKGEVEDLELED 73 >gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.. Length = 287 Score = 30.5 bits (69), Expect = 1.4 Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 384 KKTALIGESGVGKSTVAKLL 403 K + L+G+SGVGKST+ L Sbjct: 162 KTSVLVGQSGVGKSTLINAL 181 >gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.. Length = 150 Score = 30.2 bits (68), Expect = 1.5 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%) Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423 ++G SG GKSTV K L + G IDG D+ Sbjct: 4 VMGVSGSGKSTVGKALAE----RLGAPFIDGDDLHP 35 >gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. Length = 161 Score = 30.2 bits (69), Expect = 1.6 Identities = 9/13 (69%), Positives = 11/13 (84%) Query: 386 TALIGESGVGKST 398 + L G+SGVGKST Sbjct: 38 SVLAGQSGVGKST 50 >gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 243 Score = 30.2 bits (68), Expect = 1.6 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 493 KLSGGEKQRVSIAR--AILK--NPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548 +LSGG+K V++A AI K P +FDE ++LD + + LS + Sbjct: 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITT 217 Query: 549 AHRLSTITDADNI 561 R + AD Sbjct: 218 TFRPELLEVADKF 230 >gnl|CDD|36440 KOG1226, KOG1226, KOG1226, Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms, Extracellular structures]. Length = 783 Score = 29.9 bits (67), Expect = 1.9 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Query: 309 IPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNH 368 IP + +G + DS I E N L+ K+ +++ + L + N VSF Sbjct: 344 IPGSAVGVLSEDSSNIVQLIIEAYNSLSSKVILEDENQPEGLSLSYTSSCSNGVSFPGKR 403 Query: 369 HNC----IFKGISFEIAPSKK 385 C I ++FE++ + K Sbjct: 404 RKCSGITIGDEVTFEVSVTAK 424 >gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]. Length = 436 Score = 29.8 bits (67), Expect = 2.0 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 10/69 (14%) Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDG-----QDIKKITKESLRQTIGIIPQDTIL 442 L G G GK+T+A+L+ + +D+++I +E+ R+ + + TIL Sbjct: 53 LWGPPGTGKTTLARLIAG--TTNAAFEALSAVTSGVKDLREIIEEA-RKNRLLGRR-TIL 108 Query: 443 FNDTL-RYN 450 F D + R+N Sbjct: 109 FLDEIHRFN 117 >gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]. Length = 523 Score = 29.9 bits (67), Expect = 2.1 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Query: 4 ARFPSLRTLKKLW----PYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESL 59 AR L L ++ P+ P +L + F + AS+ + +GI + SL Sbjct: 114 ARNYRLSFLLRMARLYIPFAMPGIAANLMPSMSDGFFFITASEVITVGIHTYRLFGIGSL 173 Query: 60 IEQSTASKTTSYLTIGIVIL 79 +++ A + IG+ IL Sbjct: 174 LDELLAIGQYNLAYIGLAIL 193 >gnl|CDD|32599 COG2607, COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]. Length = 287 Score = 29.9 bits (67), Expect = 2.1 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGG-IITIDGQDIKKITK--ESLRQTIGIIPQ 438 P+ L G G GKS++ K L Y +G ++ +D +D+ + E LR P+ Sbjct: 84 PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR----PE 139 Query: 439 DTILFNDTLRY 449 ILF D L + Sbjct: 140 KFILFCDDLSF 150 >gnl|CDD|133310 cd04110, Rab35, Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 Score = 29.8 bits (67), Expect = 2.3 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Query: 385 KTALIGESGVGKSTVAKLLYRLYD--IKGGIITIDGQDIK 422 K +IG+SGVGKS+ LL R D G IT G D K Sbjct: 8 KLLIIGDSGVGKSS---LLLRFADNTFSGSYITTIGVDFK 44 >gnl|CDD|143965 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Length = 237 Score = 29.8 bits (68), Expect = 2.4 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 15/71 (21%) Query: 373 FKGISFEIAPSKKTALIGESG-VGKSTVAKLLYRL-------YDIKGGIITIDGQDIKKI 424 G S E KT + G VG S A+ L L D G I +G DI+++ Sbjct: 25 LGGDSLE----GKTVAVQGFGNVG-SYAAEKLLELGAKVVAVSDSSGYIYDPNGIDIEEL 79 Query: 425 T--KESLRQTI 433 KE + Sbjct: 80 LELKEEGGGRV 90 >gnl|CDD|133271 cd01868, Rab11_like, Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 Score = 29.4 bits (67), Expect = 2.5 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 17/52 (32%) Query: 385 KTALIGESGVGKSTVAKLLYRL------YDIKGGI--------ITIDGQDIK 422 K LIG+SGVGKS LL R D K I I IDG+ IK Sbjct: 5 KIVLIGDSGVGKS---NLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIK 53 >gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction only]. Length = 301 Score = 29.5 bits (66), Expect = 2.9 Identities = 12/20 (60%), Positives = 15/20 (75%) Query: 379 EIAPSKKTALIGESGVGKST 398 E+ K T L+G+SGVGKST Sbjct: 160 ELLAGKITVLLGQSGVGKST 179 >gnl|CDD|145830 pfam02881, SRP54_N, SRP54-type protein, helical bundle domain. Length = 77 Score = 29.5 bits (67), Expect = 3.0 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429 + AL+ E+ VG T K++ RL ++ G D ++IKK KE L Sbjct: 34 EEALL-EADVGVETTEKIIERLKELVGRKGLSDPEEIKKALKEEL 77 >gnl|CDD|35303 KOG0080, KOG0080, KOG0080, GTPase Rab18, small G protein superfamily [General function prediction only]. Length = 209 Score = 29.2 bits (65), Expect = 3.1 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 17/60 (28%) Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRL--------------YDIKGGIITIDGQDIK 422 S + K LIGESGVGKS+ LL R D K ++ +DG+ +K Sbjct: 5 SSGYDTTFKILLIGESGVGKSS---LLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLK 61 >gnl|CDD|143853 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 Score = 29.4 bits (67), Expect = 3.1 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 21/54 (38%) Query: 385 KTALIGESGVGKSTVAKLLYRL--------YD--------IKGGIITIDGQDIK 422 K L+G+ GVGKS+ LL R Y K I +DG+ +K Sbjct: 1 KLVLVGDGGVGKSS---LLIRFTQNKFPEEYIPTIGVDFYTK--TIEVDGKTVK 49 >gnl|CDD|143913 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family. Length = 269 Score = 29.3 bits (66), Expect = 3.3 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%) Query: 384 KKTALIGESGVGKS-TVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTIL 442 +K A+ G+ G+GKS T L ++ G + I G D K +S R +G Q TI+ Sbjct: 1 RKIAIYGKGGIGKSTTSQNTSAALAEM-GKKVLIVGCDPK---ADSTRLILGGKAQPTII 56 Query: 443 FNDTLR 448 DTLR Sbjct: 57 --DTLR 60 >gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157 Score = 29.2 bits (66), Expect = 3.4 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIK 422 G SG GKST+A L R L+ + +DG +++ Sbjct: 7 FTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVR 42 >gnl|CDD|73297 cd02034, CooC, The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.. Length = 116 Score = 29.0 bits (65), Expect = 3.5 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGG-IITID 417 K A+ G+ GVGK+T+A LL R KG ++ ID Sbjct: 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 >gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.. Length = 137 Score = 29.0 bits (65), Expect = 3.5 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 19/79 (24%) Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIIT-----------IDGQDIKKITKESLRQTIGII 436 L G SGVGKST+ K L +D G +DG D ++KE Sbjct: 4 LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEF------- 56 Query: 437 PQDTILFNDTLRYNILYGN 455 + I + L + +GN Sbjct: 57 -ERLIENGEFLEWAEFHGN 74 >gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]. Length = 178 Score = 29.1 bits (65), Expect = 4.0 Identities = 9/26 (34%), Positives = 15/26 (57%) Query: 384 KKTALIGESGVGKSTVAKLLYRLYDI 409 + ++G G GKST+AK L + + Sbjct: 1 MRILILGPPGAGKSTLAKKLAKKLGL 26 >gnl|CDD|38518 KOG3308, KOG3308, KOG3308, Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]. Length = 225 Score = 28.8 bits (64), Expect = 4.1 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%) Query: 383 SKKTALIGESGV---GKSTVAKLLYRLY 407 S KT ++G SG GK+T+AK L+R + Sbjct: 1 SMKTLIVGISGCTNSGKTTLAKSLHRFF 28 >gnl|CDD|30106 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle.. Length = 674 Score = 28.7 bits (64), Expect = 4.1 Identities = 14/39 (35%), Positives = 22/39 (56%) Query: 390 GESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428 GESG GK+ K+L R GG ++G+ +++ ES Sbjct: 95 GESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLES 133 >gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]. Length = 219 Score = 28.8 bits (63), Expect = 4.2 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDT 440 K ++G+ GVGK+T+ L +G TI G T E R+ I + DT Sbjct: 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI-GNLDPAKTIEPYRRNIKLQLWDT 61 >gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.. Length = 147 Score = 28.9 bits (65), Expect = 4.4 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438 A+ G +G GKSTVAKLL + G+ +D I+ L + IP+ Sbjct: 3 AIDGPAGSGKSTVAKLLAKKL----GLPYLDTGGIRTEEVGKLASEVAAIPE 50 >gnl|CDD|133266 cd01863, Rab18, Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 Score = 28.8 bits (65), Expect = 4.6 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 17/52 (32%) Query: 385 KTALIGESGVGKSTVAKLLYRL--------------YDIKGGIITIDGQDIK 422 K LIG+SGVGKS+ LL R D K +T+DG+ +K Sbjct: 2 KILLIGDSGVGKSS---LLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVK 50 >gnl|CDD|145224 pfam01935, DUF87, Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands. Length = 218 Score = 28.5 bits (64), Expect = 5.1 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 383 SKKTALIGESGVGKST-VAKLLYRLY-DIKGGIITID 417 S+ A++G +G GKS VA LL L ++ D Sbjct: 23 SRHFAILGSTGSGKSNTVAVLLEELLEKKGATVLIFD 59 >gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]. Length = 560 Score = 28.7 bits (64), Expect = 5.3 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRLYDIKGG 412 IA + T LI GESG GK A+ ++ L G Sbjct: 264 IAKTDSTVLILGESGTGKELFARAIHNLSPRANG 297 >gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]. Length = 197 Score = 28.7 bits (64), Expect = 5.4 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIK 422 G SG GKST+A L L+ + +DG +++ Sbjct: 28 FTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 >gnl|CDD|36182 KOG0964, KOG0964, KOG0964, Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]. Length = 1200 Score = 28.4 bits (63), Expect = 5.7 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 493 KLSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548 +LSGG+K V++A AI + +P P +FDE ++LD + + LS + + Sbjct: 1097 QLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITT 1156 Query: 549 AHRLSTITDADNI 561 R ++ AD Sbjct: 1157 TFRPELLSVADKF 1169 >gnl|CDD|28928 cd00268, DEADc, DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.. Length = 203 Score = 28.5 bits (64), Expect = 5.8 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535 I KL G VV G L E+ ++ L ++ DEA LD+ E I+ Sbjct: 113 IRKLKRGPHIVVATPGRLLDLLERGKLD-----LSKVKYLVLDEADRMLDMGFEDQIREI 167 Query: 536 LATLSKNRTTLV 547 L L K+R TL+ Sbjct: 168 LKLLPKDRQTLL 179 >gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]. Length = 494 Score = 28.2 bits (62), Expect = 6.4 Identities = 37/151 (24%), Positives = 50/151 (33%), Gaps = 23/151 (15%) Query: 425 TKESLRQTIGIIPQDTILFNDTLRYN----ILYGNPNASDQELCAAV-EVAQLKSFIMKL 479 KE L++ I + LF +LYG P L AV ++ + +K Sbjct: 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG 309 Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS-------SLDIITERHI 532 VGE + R +A P II DE S S D R + Sbjct: 310 SELLSKWVGESEKNI------RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVV 363 Query: 533 QTALATL---SKNRTTLVIA--HRLSTITDA 558 L L K LVIA +R + A Sbjct: 364 GQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 >gnl|CDD|30586 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism]. Length = 201 Score = 28.3 bits (63), Expect = 6.9 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 15/81 (18%) Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI---------KKITKESLRQTIGIIP 437 L G G GKSTVAK+L + G ID D+ + + + + R + I+ Sbjct: 6 GLTGGIGSGKSTVAKIL-----AELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILD 60 Query: 438 QDTILFNDTLRYNILYGNPNA 458 +D L LR ++ +P A Sbjct: 61 EDGGLDRRKLR-EKVFNDPEA 80 >gnl|CDD|145898 pfam02990, EMP70, Endomembrane protein 70. Length = 518 Score = 28.0 bits (63), Expect = 7.2 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 13/75 (17%) Query: 136 LSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFT 195 LS+ + +G++ + M+I IV FA + G S++ ++LY Sbjct: 261 LSALVGSGVQLLLMVIGTIV---------FACLGFLSPSNRG----SLLTAAIVLYALTG 307 Query: 196 IITSNWRVGLSKKMN 210 + L K Sbjct: 308 FVAGYVSARLYKTFK 322 >gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 251 Score = 27.9 bits (62), Expect = 7.4 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 494 LSGGEKQRV--SIARAIL--KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549 LSGG++ V S+ A+L K P+ I DE ++LD+ ++I + T K +V++ Sbjct: 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVS 226 Query: 550 HRLSTITDADNI 561 + +A+ + Sbjct: 227 LKEGMFNNANVL 238 >gnl|CDD|30200 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.. Length = 149 Score = 28.1 bits (63), Expect = 7.6 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKK 423 L G SG GKST+A+ L L+ + +DG +++ Sbjct: 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 >gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 225 Score = 28.0 bits (63), Expect = 7.7 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 7/45 (15%) Query: 387 ALIGESGVGKSTVAKLLYRLY------DIKGGIITIDGQDIKKIT 425 A++G GVGK+T+ K L + Y DIKG I + G+ +++T Sbjct: 43 AVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKK-RRLT 86 >gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213 Score = 27.9 bits (62), Expect = 7.8 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 11/68 (16%) Query: 494 LSGGEKQRVSIARAI--------LKNPPI--IIFDEATSSLDIITERHIQTALATL-SKN 542 LSGGE S++ A+ + + DE +LD + TAL + ++N Sbjct: 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN 183 Query: 543 RTTLVIAH 550 R VI+H Sbjct: 184 RMVGVISH 191 >gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.. Length = 178 Score = 27.9 bits (62), Expect = 9.2 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 494 LSGGEKQRVSIARAI----LKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT-LVI 548 LSGGEK ++A +K P + DE ++LD R + + ++K+ + +VI Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154 Query: 549 AHRLSTITDADNII 562 + +AD +I Sbjct: 155 TLKKEMFENADKLI 168 >gnl|CDD|48369 cd02040, NifH, NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.. Length = 270 Score = 27.9 bits (62), Expect = 9.5 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443 ++ A+ G+ G+GKST + L G + I G D K +S R +G T+L Sbjct: 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK---ADSTRLLLGGKAIPTVL- 57 Query: 444 NDTLR 448 DTLR Sbjct: 58 -DTLR 61 >gnl|CDD|38232 KOG3022, KOG3022, KOG3022, Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]. Length = 300 Score = 27.6 bits (61), Expect = 9.7 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%) Query: 390 GESGVGKSTVAKLLYRL---YDIKGGIITID 417 G+ GVGKSTV L K G++ D Sbjct: 55 GKGGVGKSTVTVNLALALASEGKKVGLLDAD 85 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.138 0.398 Gapped Lambda K H 0.267 0.0736 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,978,354 Number of extensions: 379179 Number of successful extensions: 1883 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1682 Number of HSP's successfully gapped: 306 Length of query: 597 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 498 Effective length of database: 4,124,446 Effective search space: 2053974108 Effective search space used: 2053974108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 60 (26.9 bits)