RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780576|ref|YP_003064989.1| ABC transporter related
protein [Candidatus Liberibacter asiaticus str. psy62]
         (597 letters)



>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 497

 Score =  535 bits (1380), Expect = e-152
 Identities = 250/497 (50%), Positives = 343/497 (69%), Gaps = 1/497 (0%)

Query: 96  IRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIV 155
           +RD L+  +GQ A   L +    H++ LS RFH+  + G LS AI  G + IE I+R I+
Sbjct: 1   LRDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWIL 60

Query: 156 VHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHE 215
            +++PT++E ++    LW  YG  +     VTVILY+ FT+I S+WR    + MNN   +
Sbjct: 61  FNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSD 120

Query: 216 CHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIG 275
            +AK  D+L+NFET++YF +E++E  R +  +  Y+++AI V  SL  LNFGQ  IFS G
Sbjct: 121 ANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTG 180

Query: 276 MVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNIL 335
           + + M +S+  V  G+ TVGD V +N LL QL+IPLN LG  YR+ RQ+  ++E++ ++L
Sbjct: 181 LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240

Query: 336 NEKIEIQNAVNSKDLKI-KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGV 394
           + + E+ +A ++  L   + G + F NVSF+Y+    I  GISF I   K  A++GESG 
Sbjct: 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGA 300

Query: 395 GKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYG 454
           GKST+ +LL+R YD+  G ITIDGQDI+ +T++SLR+ IGI+PQDT+LFNDT+ YNI YG
Sbjct: 301 GKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360

Query: 455 NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPI 514
            P+A+ +E+ AA E AQ+  FI  LP GYDT VGERGLKLSGGEKQRV+IAR ILKNPPI
Sbjct: 361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI 420

Query: 515 IIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
           +I DEATS+LD  TE+ IQ AL  +S  RTTLVIAHRLSTI DAD IIV D G +VE G+
Sbjct: 421 LILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480

Query: 575 HENLISQGGIYTSMWKK 591
           HE L++ GG+Y  MW++
Sbjct: 481 HEELLAAGGLYAEMWRR 497


>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
           superfamily [Inorganic ion transport and metabolism].
          Length = 790

 Score =  497 bits (1281), Expect = e-141
 Identities = 235/584 (40%), Positives = 366/584 (62%), Gaps = 6/584 (1%)

Query: 10  RTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69
           R L+ + PY+WP     L++R++  +F +I  + + + +P L KW+ + L    TA  T 
Sbjct: 196 RKLRTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDEL----TAPDTF 251

Query: 70  SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129
            Y  + + + +         +   N++R FL++ + Q  T  +  ++  H++ LS R+H+
Sbjct: 252 QYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL 311

Query: 130 NYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVI 189
           N + G++   +  G  S+ ++   +V  + PT+L+  ++M + +  +   +  I+ + ++
Sbjct: 312 NRRTGEVLRVMDRGTSSVTLL-EYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMML 370

Query: 190 LYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISK 249
           LY + TI  + WR    +KMNN  +E  A+  D+L+NFET++Y+N+E +E+ R  + I K
Sbjct: 371 LYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK 430

Query: 250 YKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAI 309
           Y++       SL +LN  Q  I  +G++   ++ ++ V     TVGDFV   T L QL +
Sbjct: 431 YQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYM 490

Query: 310 PLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHH 369
           PLN  GT YR  +++FI++E + ++L E+ E+ +   +  LK+  G I F+NV+F+Y+  
Sbjct: 491 PLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG 550

Query: 370 NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429
             +   ISF + P K  AL+G SG GKST+ +LL+R +D+  G ITIDGQDI+ +T+ SL
Sbjct: 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610

Query: 430 RQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
           R +IG++PQDT+LFNDT+ YNI Y  P+AS++E+ AA + AQ+   I++ P GY+T VGE
Sbjct: 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670

Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
           RGLKLSGGEKQRV+IAR ILK P II+ DEATS+LD  TER IQ ALA L  NRTT+V+A
Sbjct: 671 RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVA 730

Query: 550 HRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTSMWKKQ 592
           HRLSTI +AD I+V   G +VE G HE L+ + GG Y  MW+ Q
Sbjct: 731 HRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774


>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
           superfamily [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 591

 Score =  478 bits (1231), Expect = e-135
 Identities = 227/581 (39%), Positives = 355/581 (61%), Gaps = 7/581 (1%)

Query: 12  LKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSY 71
           L+ L  Y WP +R  L+ R+  A+  ++ +K + + +PF+ K + + L      +     
Sbjct: 13  LRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGL----NDADGNPA 68

Query: 72  LTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINY 131
           +   I  L+  YG  R+ + + N +R+F++ ++ Q         V  H+  L   F ++ 
Sbjct: 69  VLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR 128

Query: 132 KVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILY 191
             G L+  I  G R+I  ++  +V ++IPT+ E A+    L+Y +G  +  I   TV  Y
Sbjct: 129 GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAY 188

Query: 192 VWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYK 251
             FTI+ + WR    K MNN  +    + +D+LIN+E ++ FN+E++E +R +  +  Y+
Sbjct: 189 AAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYE 248

Query: 252 ESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPL 311
            + +  ++SL +LNFGQ  IFS+ +   M++ S+ +  G+ TVGD V +N+LL QL++PL
Sbjct: 249 RAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPL 308

Query: 312 NILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNC 371
           N LG++YR+ RQ+  ++  L  +L    +IQ A  +  +++  G I F++V FSY     
Sbjct: 309 NFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGPKRK 366

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
           + KG+SF I   +K A++G +G GKST+ +LL R +D  G I+ IDGQDIK+++ ESLRQ
Sbjct: 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSIL-IDGQDIKEVSLESLRQ 425

Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
           +IG++PQD++LFNDT+ YNI YGNP+ASD+E+  A + A L   I +LP+GY T+VGERG
Sbjct: 426 SIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERG 485

Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHR 551
           L LSGGEKQRVS+ARA LK+ PI++ DEATS+LD  TER I   +  +   RT ++I HR
Sbjct: 486 LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR 545

Query: 552 LSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
           L  + D D IIV D GTV E G+H  L++   +Y  +W  Q
Sbjct: 546 LDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQ 586


>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
           permease components [Defense mechanisms].
          Length = 567

 Score =  376 bits (966), Expect = e-104
 Identities = 195/584 (33%), Positives = 320/584 (54%), Gaps = 20/584 (3%)

Query: 9   LRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKT 68
           L  L++L  Y+           ++ A+  ++ S  + L +P L+  + ++L+        
Sbjct: 1   LSLLRRLLKYLKYK-------LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGE--- 50

Query: 69  TSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFH 128
                  ++ L+     + ++  +   ++ +L   +GQ     L   +   + +L   F 
Sbjct: 51  -------LLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFF 103

Query: 129 INYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTV 188
              K G L S ++N + ++  ++  ++V +  +IL    S+  L+     +   I+ + +
Sbjct: 104 DKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL-ALILLLIL 162

Query: 189 ILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYIS 248
            L      + +     LS+++   L E +A++ ++L     I+ F +E  E+ R E+   
Sbjct: 163 PLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANE 222

Query: 249 KYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLA 308
           + + + +  +     L     L+ S+G V+ + +    V  G  TVG        L +L 
Sbjct: 223 ELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLL 282

Query: 309 IPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNH 368
            P+  LG +    +++    E L  +L+E+ E+++  +    K   G I F NVSFSY  
Sbjct: 283 TPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPL--KDTIGSIEFENVSFSYPG 340

Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428
              + K ISF I P +K A++G SG GKST+ KLL RLYD   G I IDG DI+ I+ +S
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400

Query: 429 LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
           LR+ IGI+ QD +LF+ T+R NI  G P+A+D+E+  A+++A    FI  LP+GYDT+VG
Sbjct: 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460

Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548
           ERG+ LSGG++QR++IARA+L+NPPI+I DEATS+LD  TE  IQ AL  L K RTTL+I
Sbjct: 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520

Query: 549 AHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
           AHRLSTI +AD IIV D G +VE G+HE L+++GG+Y  +++ Q
Sbjct: 521 AHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564


>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
           expressed in the mitochondria.  Although the specific
           function of ATM1 is unknown, its disruption results in
           the accumulation of excess mitochondrial iron, loss of
           mitochondrial cytochromes, oxidative damage to
           mitochondrial DNA, and decreased levels of cytosolic
           heme proteins.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 236

 Score =  360 bits (926), Expect = e-100
 Identities = 141/236 (59%), Positives = 183/236 (77%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I F NV+F+Y+    + K +SF I   KK A++G SG GKST+ +LL+R YD+  G I I
Sbjct: 1   IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
           DGQDI+++T +SLR+ IG++PQDT+LFNDT+ YNI YG P+A+D+E+  A + AQ+   I
Sbjct: 61  DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120

Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
           M+ P+GYDT+VGERGLKLSGGEKQRV+IARAILKNPPI++ DEATS+LD  TER IQ AL
Sbjct: 121 MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180

Query: 537 ATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
             +SK RTT+VIAHRLSTI +AD IIV   G +VE G+HE L+++GG+Y  MWK Q
Sbjct: 181 RDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236


>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
           an N-terminal double-glycine peptidase domain [Defense
           mechanisms].
          Length = 709

 Score =  343 bits (882), Expect = 7e-95
 Identities = 180/592 (30%), Positives = 293/592 (49%), Gaps = 32/592 (5%)

Query: 10  RTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69
             L    P ++   R   +V +   +  ++A     L  P   + V + ++    +  T 
Sbjct: 140 FGLSWFIPLLFKYRRLLFEVLLASLLLQLLA-----LATPLFSQIVIDKVL-PDASRSTL 193

Query: 70  SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129
           + L IG+++         +   +   +R +L   +G+     L  +   H+ +L   +  
Sbjct: 194 TVLAIGLLLAA-------LFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246

Query: 130 NYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFL----WYSYGDIYVSIMA 185
              VG++ S +    R +E I   +   ++  I++   ++ FL     YS+    + +  
Sbjct: 247 KRSVGEIISRV----RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVL-- 300

Query: 186 VTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINF----ETIQYFNSEKFEIN 241
             + L V  T+I       L ++    L E  A+    L+      ET++   +E    +
Sbjct: 301 AAIPLNVLITLIFQP----LLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRS 356

Query: 242 RLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFIN 301
           + +  ++K              LN  + L+  +  V+ +   +  V  GE T+G  V  N
Sbjct: 357 QWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFN 416

Query: 302 TLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNN 361
            L      P+  L  ++ D +Q+ + +E L +IL+   E +       L    G I F N
Sbjct: 417 MLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFEN 476

Query: 362 VSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
           VSF Y      + + +S EI P +K A++G SG GKST+ KLL  LY  + G I +DG D
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536

Query: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480
           +  I   SLR+ +G + QD  LF+ ++R NI  GNP A+D+E+  A ++A    FI  LP
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596

Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
            GYDT VGE G  LSGG++QR+++ARA+L  P I++ DEATS+LD  TE  I   L  + 
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656

Query: 541 KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
           + RT ++IAHRLSTI  AD IIV DQG +VE GSHE L++QGG+Y  ++++Q
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708


>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 716

 Score =  334 bits (857), Expect = 6e-92
 Identities = 174/590 (29%), Positives = 298/590 (50%), Gaps = 19/590 (3%)

Query: 7   PSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTAS 66
           P+   LK+L   + P  +W     ++ A   ++ S  + + IP+ L  + +++ E   ++
Sbjct: 130 PNHTLLKRLLGLLKPEWKW-----LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSA 184

Query: 67  KTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQR 126
                    ++ L        ++  ++N IR  L    G+     L   +   + +    
Sbjct: 185 DALKRACTILLGLF-------LIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIA 237

Query: 127 FHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAF-LWYSYGDIYVSIMA 185
           F    K G+L S +++  + +   +   +   +  +++    + F    S+    V+++ 
Sbjct: 238 FFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIV 297

Query: 186 VTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEK 245
           V ++  V    I   +   LSK+  + L   +    + L    T++ F +E+ E+ R  K
Sbjct: 298 VPIVALV--AKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNK 355

Query: 246 YISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLT 305
            + +  + +   A + G       L+ ++ ++  +    H V  G  T G          
Sbjct: 356 KLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQV 415

Query: 306 QLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFS 365
           QL   L+ L + Y +  +     E +  +++ K  I          ++ G I F +VSF+
Sbjct: 416 QLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQ-GVIEFEDVSFA 474

Query: 366 Y--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423
           Y       + K +SF I P +  AL+G SG GKST+A LL R YD   G I +DG  I  
Sbjct: 475 YPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534

Query: 424 ITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGY 483
           I  + LR+ IG++ Q+ +LF+ ++R NI YG  NA+D+E+ AA ++A    FI   P+GY
Sbjct: 535 INHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGY 594

Query: 484 DTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR 543
           +TVVGE+G +LSGG+KQR++IARA+L+NP ++I DEATS+LD  +E  +Q AL  L + R
Sbjct: 595 NTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGR 654

Query: 544 TTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS-QGGIYTSMWKKQ 592
           T LVIAHRLST+  AD I+V D+G VVE G+H+ L+S   G+Y  + ++Q
Sbjct: 655 TVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQ 704


>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
            superfamily [Secondary metabolites biosynthesis,
            transport and catabolism].
          Length = 1228

 Score =  327 bits (840), Expect = 5e-90
 Identities = 172/591 (29%), Positives = 288/591 (48%), Gaps = 25/591 (4%)

Query: 11   TLKKLWPYMWPANRWDLKVRIIGAMFSVIA-SKFVILGIPFLLKWVTESLIEQSTASKTT 69
            +  +++    P    +    ++G++ + I  + + +     +   V E+           
Sbjct: 651  SFWRIFKLNKP----EWPYLLLGSLGAAIRGATYPLFAY--VFSQVLEAFYPPD--DDEL 702

Query: 70   SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHI 129
                    ++    G   +V+ I+N ++ + +   G+  T  L   +   + +    +  
Sbjct: 703  KREVRAWALIFLGLG---IVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFD 759

Query: 130  NYK-VGKLSSAISNGIRSIEMII--RIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAV 186
            + +  G LSS ++    ++   +  R+ +V      +   I +AF+   YG     ++  
Sbjct: 760  DPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI---YGWRLALVVLA 816

Query: 187  TVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKY 246
            T  L +    +   +  G SK       E      + + N  T+    +E+  +   ++ 
Sbjct: 817  TFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEE 876

Query: 247  ISKYKESAI--SVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLL 304
            + K ++S+    + + LG   F Q L+F +   ++    +  +  GE T  D   +   L
Sbjct: 877  LEKPRKSSFKRGLISGLG-FGFSQSLLFFV-YALSFWYGARLISNGEMTFEDVFRVFMAL 934

Query: 305  TQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLK-IKNGHIVFNNVS 363
            +  A+ L    +   D  ++ I    +  IL+ K  I     S        G I F NVS
Sbjct: 935  SFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVS 994

Query: 364  FSY--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI 421
            F+Y       +   +S  I   +  AL+G SG GKSTV  LL R YD   G + IDG DI
Sbjct: 995  FAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI 1054

Query: 422  KKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
            K +  + LR+ IG++ Q+ +LFN T+R NI YG+   S++E+  A ++A   +FI  LP 
Sbjct: 1055 KDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQ 1114

Query: 482  GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
            GYDT VGERG++LSGG+KQR++IARAIL+NP I++ DEATS+LD  +ER +Q AL    +
Sbjct: 1115 GYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME 1174

Query: 542  NRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
             RTT+VIAHRLSTI +AD I V   G VVE G+H+ L+++ GIY  + + Q
Sbjct: 1175 GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQ 1225



 Score =  305 bits (784), Expect = 2e-83
 Identities = 186/587 (31%), Positives = 299/587 (50%), Gaps = 36/587 (6%)

Query: 22  ANRWDLKVRIIGAMFSVIASKFVILGIPFLL---KWVTESLIEQSTASKTTSYLTIGIVI 78
           A+R+D  + I+G++ ++       LG+P +      +T+ L      +   +   +  V 
Sbjct: 22  ADRFDYLLMILGSIGAIAHG----LGLPLMSIIFGKLTDVLG---DNTNKIASSEVSKVA 74

Query: 79  LITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSS 138
           L   Y  + V   IS  I+   ++  G+  T  +  + +  + +    +      G+L +
Sbjct: 75  LYFVY--LGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVT 132

Query: 139 AISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIIT 198
            +S+ I  I+  I   V + I  +  F      + + YG     +M   + L      + 
Sbjct: 133 RLSDDIELIQDAIGEKVGNFIQLLATFIAGFV-IGFYYGWKLTLVMLSFIPLIAIAGGLL 191

Query: 199 SNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAI--- 255
           + +   L++K      +  +   + + +  T+  FN EK EI R  K +    +  I   
Sbjct: 192 ARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKG 251

Query: 256 -SVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGD--FVFINTL-----LTQL 307
                 LG+  F   L+F+    +     S  +  G    GD   VF + L     L Q 
Sbjct: 252 LFKGLGLGFTFF---LLFAS-YALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307

Query: 308 AIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY- 366
           +  L+        +R +   I E ++     I+  +        IK G I F NV FSY 
Sbjct: 308 SPHLSAFAK----ARAAAYRIFETIDR-KPSIDPYSKGGRVLSSIK-GEIEFRNVCFSYP 361

Query: 367 -NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT 425
                 I KG+S +I   +  AL+G SG GKST+ +LL R YD   G + IDG+DI+ + 
Sbjct: 362 SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLN 421

Query: 426 KESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDT 485
            + LR  IG++ Q+ +LF  T+R NI YG P+A+ +E+  A + A    FI+KLP+GYDT
Sbjct: 422 LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481

Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT 545
           +VGERG++LSGG+KQR++IARA+++NP I++ DEATS+LD  +ER +Q AL   SK RTT
Sbjct: 482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTT 541

Query: 546 LVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
           +V+AHRLSTI +AD I V ++G +VE G+H+ LI+ GGIY+S+ + Q
Sbjct: 542 IVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQ 588


>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
           related to eukaryotic MDR proteins.  ABC transporters
           are a large family of proteins involved in the transport
           of a wide variety of different compounds, like sugars,
           ions, peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 234

 Score =  308 bits (790), Expect = 3e-84
 Identities = 122/234 (52%), Positives = 163/234 (69%), Gaps = 1/234 (0%)

Query: 357 IVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
           + F NV+F Y      + + IS +I   +  AL+G SG GKST+  L+ R YD+  G I 
Sbjct: 1   VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60

Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
           IDG D++  T  SLR+ IG++ QD  LFNDT+  NI YG P A+ +E+  A   A    F
Sbjct: 61  IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120

Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
           IM+LP GYDTV+GERG+KLSGG++QR++IARA+LK+PPI+I DEATS+LD  +ER +Q A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180

Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMW 589
           L  L KNRTT VIAHRLSTI +AD I+V + G +VE G+HE L++QGG+Y  + 
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234


>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
           mitochondrial ATP-binding cassette protein involved in
           iron homeostasis and one of four ABC transporters
           expressed in the mitochondrial inner membrane, the other
           three being MDL1(ABC7), MDL2, and ATM1.  In fact, the
           yeast MDL1 (multidrug resistance-like protein 1) and
           MDL2 (multidrug resistance-like protein 2) transporters
           are also included in this CD.  MDL1 is an ATP-dependent
           permease that acts as a high-copy suppressor of ATM1 and
           is thought to have a role in resistance to oxidative
           stress. Interestingly, subfamily B is more closely
           related to the carboxyl-terminal component of subfamily
           C than the two halves of ABCC molecules are with one
           another..
          Length = 238

 Score =  297 bits (763), Expect = 5e-81
 Identities = 122/238 (51%), Positives = 161/238 (67%), Gaps = 2/238 (0%)

Query: 357 IVFNNVSFSY--NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
           I F NVSF Y       I KG+S  I P K  AL+G SG GKSTV  LL R YD   G I
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
            +DG DI+ +    LR  IG++ Q+ +LF+ T+  NI YG P+A+D+E+  A + A +  
Sbjct: 61  LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120

Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
           FIM LP+GYDT+VGERG +LSGG+KQR++IARA+L+NP I++ DEATS+LD  +E+ +Q 
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180

Query: 535 ALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
           AL    K RTT+VIAHRLSTI +AD I V   G VVE G+H+ L++Q G+Y  + K Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238


>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
           protein.  In A. tumefaciens cyclic beta-1, 2-glucan must
           be transported into the periplasmic space to exert its
           action as a virluence factor.  This subfamily belongs to
           the MRP-like family and is involved in drug, peptide,
           and lipid export.  The MRP-like family, similar to all
           ABC proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains each
           composed of six transmembrane (TM) helices and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 229

 Score =  283 bits (725), Expect = 1e-76
 Identities = 116/229 (50%), Positives = 162/229 (70%)

Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
           G I F NV+FSY+    + K I+F I P +  A++G +G GK+T+  LL R YD + G I
Sbjct: 1   GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60

Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
            IDG DI+ I+++SLR  IG++ QDT LF+ T+  NI  G PNA+D+E+  A + A    
Sbjct: 61  LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120

Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
           FIMKLPNGYDTV+GE G  LS GE+Q ++IARA+L++P I+I DEATS++D  TE+ IQ 
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180

Query: 535 ALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGG 583
           AL  L K RT+++IAHRLSTI +AD I+V D G ++E G+H+ L+++ G
Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229


>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
           biosynthesis, ATPase and permease components [Energy
           production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 559

 Score =  262 bits (670), Expect = 3e-70
 Identities = 160/568 (28%), Positives = 263/568 (46%), Gaps = 21/568 (3%)

Query: 31  IIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVN 90
           +I A+ +V++    I+    LL  +   LIE          L + ++ L        V+ 
Sbjct: 3   VISALLAVLSG-IAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIAL--------VLR 53

Query: 91  LISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMI 150
                +R+ L          +L   V+  + KL   F      G  ++    GI  +E  
Sbjct: 54  AFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPY 113

Query: 151 I-RIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKM 209
             R +    +  I+   I +A  ++++      I+ +T  L   F I+        S+K 
Sbjct: 114 YARYLPQMFLSAIVPLLILIAIFFFNWAAAL--ILLITAPLIPLFMILVGLAAKDASEKQ 171

Query: 210 NNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVAT----SLGWLN 265
            + L        D L   ET++ F   +    R+ K    ++++ +SV      S   L 
Sbjct: 172 FSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLE 231

Query: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSF 325
           F   L  SI +V   I        G+ T+   +F+  L  +   PL  LG+ +  +    
Sbjct: 232 FFAYL--SIALVAVYIGFRLLGE-GDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGE 288

Query: 326 IEIEELLNILNEKIEIQNAVNSKDLKIKNG-HIVFNNVSFSYNHHNCIFKGISFEIAPSK 384
              ++L  +L   +    +    ++  +    I   N+SF Y         ++  I   +
Sbjct: 289 AAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQ 348

Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFN 444
            TAL+G SG GKST+  LL        G I ++G D++ ++ E+ R+ I  + Q+  LF 
Sbjct: 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408

Query: 445 DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
            T+R NIL   P+ASD+E+ AA++ A L  F+ K P+G DTV+GE G  LSGG+ QR+++
Sbjct: 409 GTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLAL 467

Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF 564
           ARA+L    +++ DE T+ LD  TE+ I  AL  L+K +T LVI HRL    DAD I+V 
Sbjct: 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVL 527

Query: 565 DQGTVVESGSHENLISQGGIYTSMWKKQ 592
           D G +VE G+HE L  + G+Y ++ K+Q
Sbjct: 528 DNGRLVEQGTHEELSEKQGLYANLLKQQ 555


>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
            protein/mitoxantrone resistance protein, ABC superfamily
            [Secondary metabolites biosynthesis, transport and
            catabolism].
          Length = 1381

 Score =  239 bits (611), Expect = 2e-63
 Identities = 156/608 (25%), Positives = 271/608 (44%), Gaps = 54/608 (8%)

Query: 11   TLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTS 70
            +      Y+  A  + L + I+  +  V+     I    +L  W  +     +T   T+ 
Sbjct: 802  SWSVYKKYIKAAGGFLLVLLIL--LLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSF 859

Query: 71   YLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHIN 130
            YL +        Y  + V + +   +R FL+ + G  A+  L+ ++++ + +    F   
Sbjct: 860  YLGV--------YALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT 911

Query: 131  YKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVIL 190
               G++ +  S  I ++++        L+P  LEF +             + I+ V   +
Sbjct: 912  TPTGRILNRFSKDIDTVDV--------LLPFTLEFFLQSLLN-------VLGILVVISYV 956

Query: 191  YVWFTIITS----------NWRVGLSKKMNNLLHECHAKVF----DTLINFETIQYFNSE 236
              WF I              + +  S+++  L     + ++    +TL    TI+ F  E
Sbjct: 957  TPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKE 1016

Query: 237  KFEINRLEKYISKYKESAISVATSLGWLNFGQGLI--FSIGMVITMIISSHAVYIGEQTV 294
            +  I   ++ I +   +     ++  WL     L+    + +     +   +  I    V
Sbjct: 1017 ERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLV 1076

Query: 295  GDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIE-IQNAVNSKDLKI- 352
            G      +   QL   L  L     +   + + +E +L   +   E       S+     
Sbjct: 1077 G---LSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSW 1133

Query: 353  -KNGHIVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410
               G I F ++S  Y  +   + KGISF I P +K  ++G +G GKS++   L+RL +  
Sbjct: 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA 1193

Query: 411  GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVE 468
             G I IDG DI KI    LR  + IIPQD +LF+ T+R+N+   +P    SD E+  A+E
Sbjct: 1194 EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL---DPFDEYSDDEIWEALE 1250

Query: 469  VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
              QLK  +  LP G D+ V E G   S G++Q + +ARA+L+   I++ DEAT+S+D  T
Sbjct: 1251 RCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310

Query: 529  ERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTS 587
            +  IQ  +    K+ T L IAHRL+T+ D+D ++V D G VVE  S   L+S    +++S
Sbjct: 1311 DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSS 1370

Query: 588  MWKKQCES 595
            + K+   S
Sbjct: 1371 LLKEAALS 1378



 Score =  160 bits (405), Expect = 1e-39
 Identities = 126/572 (22%), Positives = 252/572 (44%), Gaps = 50/572 (8%)

Query: 28  KVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMR 87
           +  ++  +F  +      +G   L K     LI   +  +        + +L+       
Sbjct: 201 RTFLLSGIFLFLRDLAGFVGPLLLKK-----LILFFSEKRLPLNNGYLLAVLL---FLAS 252

Query: 88  VVNLISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSI 147
           ++  +  H   F+   +G      L   +     +LS        VG++ + +S   + +
Sbjct: 253 LLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRL 312

Query: 148 EMIIRIIVVHLIPTI-LEFAISMAFLWYSYGDIYVSIMAVTVI---LYVWFTIITSNWRV 203
                   +HL+ +  L+  +++  L+   G   ++ +AV V+   L  +     + ++ 
Sbjct: 313 SDAA--CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQK 370

Query: 204 GLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLE----KYISKYKESAISVAT 259
            L K+ +  +      + + L   + I+ +  EK  + ++E    K +   ++SA   A 
Sbjct: 371 RLMKRKDERI----KLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSAL 426

Query: 260 SLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFIN-TLLTQLAIPLNILGTIY 318
           +     F       +  V+T ++    + +G        F +  L   L  PL +L ++ 
Sbjct: 427 NSFLNFF----SPVLVSVVTFVV--FVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVI 480

Query: 319 RDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHN--CIFKGI 376
               Q+ + ++ L   L  +    ++V     +     I   N SFS++  +     K I
Sbjct: 481 SQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDI 540

Query: 377 SFEIAPSKKTALIGESGVGKST-VAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGI 435
           +FEI   +  A++G  G GKS+ ++ +L  +  + G +              ++  ++  
Sbjct: 541 NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV--------------AVNGSVAY 586

Query: 436 IPQDTILFNDTLRYNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTVVGERGLKL 494
           +PQ   + N T+R NIL+G+P   D+E    V +   LK  +  LP G  T +GERG+ L
Sbjct: 587 VPQQPWIQNGTVRENILFGSP--YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINL 644

Query: 495 SGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRLS 553
           SGG+KQR+S+ARA+ ++  I + D+  S++D    +HI +  +  L + +T +++ H+L 
Sbjct: 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ 704

Query: 554 TITDADNIIVFDQGTVVESGSHENLISQGGIY 585
            +  AD IIV   G +VESG++E L+  GG +
Sbjct: 705 FLPHADQIIVLKDGKIVESGTYEELLKSGGDF 736


>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
           biosynthesis, fused ATPase and permease components
           [Energy production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 573

 Score =  237 bits (606), Expect = 6e-63
 Identities = 145/598 (24%), Positives = 273/598 (45%), Gaps = 50/598 (8%)

Query: 12  LKKLWPYMWP--ANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTT 69
           ++ L PY+     +++ L + I+ A+ +++AS    +G+  L  W    +   + A    
Sbjct: 1   MRALLPYLRLYKRHKFGLLLGIVLAILTLLAS----IGLLTLSGWF---ISASAIAGLAY 53

Query: 70  SYLTIGIVILITSYGTMRVVNLISNHIRDFLYVE--IGQGATCTLYHQVVSHVYKLSQRF 127
            +  +     +     +R             YVE  +   AT      V+S +     R 
Sbjct: 54  IFNVMLPSAGVRGLAILRTAAR---------YVERLVSHDATFR----VLSAL-----RV 95

Query: 128 HINYKVGKLSSAISNGIRSIEMIIRII-------------VVHLIPTILEFAISMAFLWY 174
            +  K+  LS A+    RS +++ R++             +   +  ++  A+    L  
Sbjct: 96  RLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGL-- 153

Query: 175 SYGDIYVSIMAVTVILYVWFTIITSNWRVG--LSKKMNNLLHECHAKVFDTLINFETIQY 232
           S+  I ++++   ++L +   I T  +R G      +        ++  D +     +  
Sbjct: 154 SFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLI 213

Query: 233 FNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQ 292
           F +E      LE   + + ++    A   G  +    LI  + ++  ++  +  V  G  
Sbjct: 214 FGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGAL 273

Query: 293 T-VGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLK 351
              G  + +  +   L     +    ++   Q       L +IL++K E+      +   
Sbjct: 274 AQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV--TFPDEQTA 331

Query: 352 IKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410
                +   NVSF+Y        K  +  +A  +K A++G SG GKST+ +LL   +D +
Sbjct: 332 TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391

Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
            G IT++G +I  + +++LR+TI ++ Q   LF+ TLR N+   NP+ASD+EL AA++  
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451

Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
            L+  +   P+G +T +GE G +LSGGE++R+++ARA+L + P+ + DE T  LD ITER
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511

Query: 531 HIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
            +   L   ++ +T L++ HRL  +   D IIV D G ++E G+H  L++  G Y  +
Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRL 569


>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
           central component of the secretion machinery that
           translocates the toxin, hemolysin A, in a
           Sec-independent fashion across both membranes of E.
           coli.  The hemolysin A (HlyA) transport machinery is
           composed of the ATP-binding cassette (ABC) transporter
           HlyB located in the inner membrane, hemolysin D (HlyD),
           also anchored in the inner membrane, and TolC, which
           resides in the outer membrane.  HlyD apparently forms a
           continuous channel that bridges the entire periplasm,
           interacting with TolC and HlyB.  This arrangement
           prevents the appearance of periplasmic intermediates of
           HlyA during substrate transport.  Little is known about
           the molecular details of HlyA transport, but it is
           evident that ATP-hydrolysis by the ABC-transporter HlyB
           is a necessary source of energy..
          Length = 237

 Score =  233 bits (596), Expect = 8e-62
 Identities = 99/237 (41%), Positives = 151/237 (63%), Gaps = 1/237 (0%)

Query: 357 IVFNNVSFSYNHHN-CIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
           I F +V F Y      I   IS  I P +   ++G SG GKST+ KL+ R Y  + G + 
Sbjct: 1   ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
           +DG D+       LR+ +G++ Q+ +LFN ++R NI   +P  S + +  A ++A    F
Sbjct: 61  VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120

Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
           I +LP GYDT+VGE+G  LSGG++QR++IARA++ NP I+IFDEATS+LD  +E  I   
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180

Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
           +  +   RT ++IAHRLST+ +AD IIV ++G +VE GSH+ L+++ G+Y  +++ Q
Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237


>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminus, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resistance lung cancer cell in
           which p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 221

 Score =  231 bits (591), Expect = 4e-61
 Identities = 101/223 (45%), Positives = 136/223 (60%), Gaps = 6/223 (2%)

Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           G I F NVS  Y  +   + K ISF I P +K  ++G +G GKS++   L+RL ++  G 
Sbjct: 1   GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60

Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPN--ASDQELCAAVEVAQ 471
           I IDG DI KI    LR  I IIPQD +LF+ T+R N+   +P    SD+EL  A+E   
Sbjct: 61  ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVG 117

Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
           LK F+  LP G DTVV E G  LS G++Q + +ARA+L+   I++ DEAT+S+D  T+  
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177

Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
           IQ  +    K+ T L IAHRL TI D+D I+V D+G VVE  S
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220


>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
           exporters. Many non-lantibiotic bacteriocins of lactic
           acid bacteria are produced as precursors which have
           N-terminal leader peptides that share similarities in
           amino acid sequence and contain a conserved processing
           site of two glycine residues in positions -1 and -2.  A
           dedicated ATP-binding cassette (ABC) transporter is
           responsible for the proteolytic cleavage of the leader
           peptides and subsequent translocation of the
           bacteriocins across the cytoplasmic membrane..
          Length = 220

 Score =  220 bits (563), Expect = 6e-58
 Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 1/220 (0%)

Query: 355 GHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           G I F NVSFSY N        +S  I   +K A+IG  G GKST+ KLL  LY    G 
Sbjct: 1   GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60

Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473
           + +DG DI+++    LR+ IG +PQD  LF  TLR NI  G P A D+ +  A E+A + 
Sbjct: 61  VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120

Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
            F+ K PNG D  +GERG  LSGG++Q V++ARA+L +PPI++ DE TS++D+ +E  ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180

Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573
             L  L  ++T ++I HR S +   D IIV D G +V  G
Sbjct: 181 ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220


>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
           Processing; TAP is essential for peptide delivery from
           the cytosol into the lumen of the endoplasmic reticulum
           (ER), where these peptides are loaded on major
           histocompatibility complex (MHC) I molecules.  Loaded
           MHC I leave the ER and display their antigenic cargo on
           the cell surface to cytotoxic T cells.  Subsequently,
           virus-infected or malignantly transformed cells can be
           eliminated.  TAP belongs to the large family of
           ATP-binding cassette (ABC) transporters, which
           translocate a vast variety of solutes across membranes..
          Length = 226

 Score =  216 bits (552), Expect = 1e-56
 Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 2/217 (0%)

Query: 355 GHIVFNNVSFSYNH--HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
           G + F NV+F+Y       + + +SF + P + TAL+G SG GKSTV  LL   Y  +GG
Sbjct: 10  GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69

Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
            + +DG+ I +   + L   + ++ Q+ +LF  +L+ NI YG  + S + +  A + A  
Sbjct: 70  QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129

Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
            SFI +L +GYDT VGE+G +LSGG+KQRV+IARA+++NP ++I DEATS+LD  +E+ +
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189

Query: 533 QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTV 569
           Q AL    + RT LVIAHRLST+  AD I+V D G +
Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226


>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
           transporters are involved in drug, peptide, and lipid
           export.  They belong to the subfamily C of the
           ATP-binding cassette (ABC) superfamily of transport
           proteins.  The ABCC subfamily contains transporters with
           a diverse functional spectrum that includes ion
           transport, cell surface receptor, and toxin secretion
           activities.  The MRP-like family, simlar to all ABC
           proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains, each
           composed of six transmembrane (TM) helices, and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 171

 Score =  214 bits (547), Expect = 6e-56
 Identities = 95/212 (44%), Positives = 120/212 (56%), Gaps = 43/212 (20%)

Query: 357 IVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
           I F NVSFSY      + K +S  I P +K A++G SG GKST+ KLL RLYD   G I 
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
           IDG D++ +  ESLR+ I  +PQD  LF+ T+R NI                        
Sbjct: 61  IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96

Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
                             LSGG++QR++IARA+L++PPI+I DEATS+LD  TE  I  A
Sbjct: 97  ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138

Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQG 567
           L  L+K +T +VIAHRLSTI DAD IIV D G
Sbjct: 139 LRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170


>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
           and permease components [General function prediction
           only].
          Length = 580

 Score =  167 bits (425), Expect = 6e-42
 Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 8/264 (3%)

Query: 320 DSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISF 378
            +RQS+  + ELL  L    E         L    G +    ++ +       I KGISF
Sbjct: 304 AARQSYKRLNELLAELPAAAE------RMPLPAPQGALSVERLTAAPPGQKKPILKGISF 357

Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
            +   +   +IG SG GKST+A+LL  ++    G + +DG D+++  +E L + IG +PQ
Sbjct: 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417

Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498
           D  LF+ T+  NI      A  +++  A  +A +   I++LP GYDT +GE G  LSGG+
Sbjct: 418 DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477

Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIAHRLSTITD 557
           +QR+++ARA+  +P +++ DE  S+LD   E  +  A+    ++  T +VIAHR S +  
Sbjct: 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537

Query: 558 ADNIIVFDQGTVVESGSHENLISQ 581
            D I+V   G +   G  E ++++
Sbjct: 538 VDKILVLQDGRIAAFGPREEVLAK 561


>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
           transporter 1).  NFT1 belongs to the MRP (mulrtidrug
           resisitance-associated protein) family of ABC
           transporters.  Some of the MRP members have five
           additional transmembrane segments in their N-terminas,
           but the function of these additional membrane-spanning
           domains is not clear.  The MRP was found in the
           multidrug-resisting lung cancer cell in which
           p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions such as
           glutathione, glucuronate, and sulfate..
          Length = 207

 Score =  165 bits (419), Expect = 3e-41
 Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 20/223 (8%)

Query: 353 KNGHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
           ++G I   N+S  Y      + K +SF++   +K  ++G +G GKST+   L+R  + + 
Sbjct: 3   EHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62

Query: 412 GIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQ 471
           G I IDG DI  I  E LR ++ IIPQD  LF+ T+R N+   +   SD+E+  A+ V+ 
Sbjct: 63  GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALRVS- 120

Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
                            E GL LS G++Q + +ARA+LK P +++ DEAT+S+D  T+  
Sbjct: 121 -----------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163

Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGS 574
           IQ  +     N T L IAHRL TI D D I+V D G V E   
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206


>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2.  The sulfonylurea receptor
           SUR is an ATP binding cassette (ABC) protein of the
           ABCC/MRP family.  Unlike other ABC proteins, it has no
           intrinsic transport function, neither active nor
           passive, but associates with the potassium channel
           proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
           potassium (K(ATP)) channel.  Within the channel complex,
           SUR serves as a regulatory subunit that fine-tunes the
           gating of Kir6.x in response to alterations in cellular
           metabolism.  It constitutes a major pharmaceutical
           target as it binds numerous drugs, K(ATP) channel
           openers and blockers, capable of up- or down-regulating
           channel activity..
          Length = 257

 Score =  162 bits (412), Expect = 2e-40
 Identities = 92/236 (38%), Positives = 142/236 (60%), Gaps = 3/236 (1%)

Query: 355 GHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           G I  +++   Y N+   + K +   I P +K  + G +G GKS+++   +R+ DI  G 
Sbjct: 18  GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77

Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLK 473
           I IDG DI K+   +LR  + II QD ILF+ ++R+N L      +D  L  A+E+AQLK
Sbjct: 78  IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIAQLK 136

Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
           + +  LP G D VV E G   S G++Q   +ARA ++   I+I DEAT+S+D+ TE  +Q
Sbjct: 137 NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196

Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ-GGIYTSM 588
             + T   +RT + IAHR+STI DAD ++V  +G +VE  + ENL++Q  G++ S+
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252


>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
           component of the protease secretion system PrtD, a
           60-kDa integral membrane protein sharing 37% identity
           with HlyB, the ABC component of the alpha-hemolysin
           secretion pathway, in the C-terminal domain.  They
           export degradative enzymes by using a type I protein
           secretion system and  lack an N-terminal signal peptide,
           but contain a C-terminal secretion signal.  The Type I
           secretion apparatus is made up of three components, an
           ABC transporter, a membrane fusion protein (MFP), and an
           outer membrane protein (OMP).  For the HlyA transporter
           complex, HlyB (ABC transporter) and HlyD (MFP) reside in
           the inner membrane of E. coli.  The OMP component is
           TolC, which is thought to interact with the MFP to form
           a continuous channel across the periplasm from the
           cytoplasm to the exterior.  HlyB belongs to the family
           of ABC transporters, which are ubiquitous, ATP-dependent
           transmembrane pumps or channels.  The spectrum of
           transport substrates ranges from inorganic ions,
           nutrients such as amino acids, sugars, or peptides,
           hydrophobic drugs, to large polypeptides, such as HlyA..
          Length = 173

 Score =  148 bits (375), Expect = 5e-36
 Identities = 70/215 (32%), Positives = 101/215 (46%), Gaps = 44/215 (20%)

Query: 357 IVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
           +   NVSF Y      + + +SF I P +  A+IG SG GKST+A+L+  L     G + 
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
           +DG DI +     L   +G +PQD  LF+ ++  NIL                       
Sbjct: 61  LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL----------------------- 97

Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
                              SGG++QR+ +ARA+  NP I++ DE  S LD+  ER +  A
Sbjct: 98  -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138

Query: 536 LATLSKNRTT-LVIAHRLSTITDADNIIVFDQGTV 569
           +A L     T +VIAHR  T+  AD I+V + G V
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173


>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
           cytochrome bd biogenesis.  The CydC and CydD proteins
           are important for the formation of cytochrome bd
           terminal oxidase of E. coli and it has been proposed
           that they were necessary for biosynthesis of the
           cytochrome bd quinol oxidase and for periplasmic c-type
           cytochromes.  CydCD were proposed to determine a
           heterooligomeric complex important for heme export into
           the periplasm or to be involved in the maintenance of
           the proper redox state of the periplasmic space.  In
           Bacillus subtilius, the absence of CydCD does not affect
           the presence of halo-cytochrome c in the membrane and
           this observation suggests that CydCD proteins are not
           involved in the export of heme in this organism..
          Length = 178

 Score =  148 bits (374), Expect = 6e-36
 Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 41/218 (18%)

Query: 357 IVFNNVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
           +  NNVSFSY      + K +S E+   +K AL+G SG GKST+ +LL      + G IT
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
           +DG  +  + +++L   I ++ Q   LF+ TLR N+                        
Sbjct: 61  LDGVPVSDL-EKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95

Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
                          G + SGGE+QR+++AR +L++ PI++ DE T  LD ITER + + 
Sbjct: 96  ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140

Query: 536 LATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573
           +  + K++T + I H L+ I   D I+  + G ++  G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178


>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  This ABC transport system of the CbiMNQO family
           is involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most of
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 211

 Score =  142 bits (361), Expect = 2e-34
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 14/218 (6%)

Query: 358 VFNNVSFSYNHHN-CIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
              N+SFSY          IS  I   +   ++G +G GKST+ +LL  L     G + +
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60

Query: 417 DGQDIKKITKESLRQTIGIIPQ--DTILFNDTLRYNILYG--NPNASDQELCAAVEVAQL 472
           DG+D+ K++ + LR+ +G++ Q  D   F  T+   + +G  N    ++E+   VE A L
Sbjct: 61  DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA-L 119

Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
           +   ++               LSGG+KQRV+IA  +  +P I++ DE T+ LD    R +
Sbjct: 120 ELVGLEGLRDRSP------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173

Query: 533 QTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGT 568
              L  L     T++I  H L  + + AD +IV + G 
Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211


>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminas, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resisting lung cancer cell in
           which p-glycoprotein was not overexpressed. MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 204

 Score =  136 bits (345), Expect = 2e-32
 Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 20/218 (9%)

Query: 357 IVFNNVSFSYN----HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
           I   + SF+++      +   K I+ E+   +  A++G  G GKS++   L    +   G
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
            +++ G             +I  + Q+  + N T+R NIL+G P   ++     ++   L
Sbjct: 61  SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACAL 106

Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
           +  +  LP+G  T +GE+G+ LSGG+KQR+S+ARA+  +  I + D+  S++D    RHI
Sbjct: 107 EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166

Query: 533 --QTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGT 568
                L  L  N+T +++ H+L  +  AD I+V D G 
Sbjct: 167 FENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204


>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
           component [Defense mechanisms].
          Length = 293

 Score =  135 bits (342), Expect = 3e-32
 Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 20/236 (8%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N++  Y        G+SFE+ P +   L+G +G GK+T+ K+L  L     G I +
Sbjct: 5   IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQELCAAVEVA 470
            G D+ K   + +R+ IG +PQ+  L+ + T+R N+     LYG      +E    +   
Sbjct: 65  LGYDVVKEPAK-VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL--- 120

Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
            L+ F      G +    ++   LSGG KQR+SIA A+L +P ++I DE TS LD  + R
Sbjct: 121 -LELF------GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR 173

Query: 531 HIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGG 583
            I   L  L+K    T L+  H L    +  D +I+ + G ++  G+ E L  + G
Sbjct: 174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229


>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
           fundamental importance in the cell physiology of
           bacteria because phosphate is required as a nutrient.
           The Pst system of E. coli comprises four distinct
           subunits encoded by the pstS, pstA, pstB, and pstC
           genes.  The PstS protein is a phosphate-binding protein
           located in the periplasmic space. P stA and PstC are
           hydrophobic and they form the transmembrane portion of
           the Pst system.  PstB is the catalytic subunit, which
           couples the energy of ATP hydrolysis to the import of
           phosphate across cellular membranes through the Pst
           system, often referred as ABC-protein.  PstB belongs to
           one of the largest superfamilies of proteins
           characterized by a highly conserved adenosine
           triphosphate (ATP) binding cassette (ABC), which is also
           a nucleotide binding domain (NBD)..
          Length = 227

 Score =  135 bits (342), Expect = 3e-32
 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 21/231 (9%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG----- 411
           I   +++  Y       K IS +I   + TALIG SG GKST+ +LL RL D+       
Sbjct: 1   IELRDLNVYYGDK-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59

Query: 412 GIITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG---NPNASDQELCAA 466
           G + +DG+DI    +    LR+ +G++ Q    F  ++  N+ YG   +     +EL   
Sbjct: 60  GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119

Query: 467 VEVAQLKSFIMKLPNGYDTVVGER--GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
           VE A  K+            V +R   L LSGG++QR+ +ARA+   P +++ DE TS+L
Sbjct: 120 VEEALRKA-------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172

Query: 525 DIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
           D I+   I+  +A L K  T +++ H +      AD       G +VE G 
Sbjct: 173 DPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223


>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 235

 Score =  133 bits (337), Expect = 1e-31
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 23/240 (9%)

Query: 354 NGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
              I   N+SF Y       K +S EI   ++  LIG +G GKST+ KLL  L     G 
Sbjct: 1   LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60

Query: 414 ITIDGQDIK-KITKESLRQTIGIIPQ--DTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
           + +DG D   + +   LRQ +G++ Q  D  LF  T+   + +G  N         +   
Sbjct: 61  VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN-------LGLPRE 113

Query: 471 QLKSFIMKLPNGYDTVVGERGLK------LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
           +++  +         +VG   L       LSGG+KQRV+IA  +   P I++ DE T+ L
Sbjct: 114 EIEERV----AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169

Query: 525 DIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
           D    R +   L  L +   +T +++ H L  + + AD ++V D G ++  G    + + 
Sbjct: 170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229


>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
           systems, contain duplicated ATPase [General function
           prediction only].
          Length = 539

 Score =  133 bits (337), Expect = 1e-31
 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 32/252 (12%)

Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD- 408
           L+++N  + F     +        + +SFE+ P +   ++GESG GKST+A  L  L   
Sbjct: 6   LEVENLTVEFA----TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61

Query: 409 ---IKGGIITIDGQDIKKITKESLRQ----TIGIIPQDTI-LFNDTLR--------YNIL 452
              I  G + +DG+D+  +++  +R+     I +I QD +   N  +           + 
Sbjct: 62  GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121

Query: 453 YGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNP 512
                A  ++   AVE+ +     + LP+           +LSGG +QRV IA A+   P
Sbjct: 122 GKGSRAEARKR--AVELLEQ----VGLPD--PERRDRYPHQLSGGMRQRVMIAMALALKP 173

Query: 513 PIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTV 569
            ++I DE T++LD+ T+  I   L  L +      L I H L  + + AD ++V  +G +
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233

Query: 570 VESGSHENLISQ 581
           VE+G  E ++S 
Sbjct: 234 VETGPTEEILSN 245



 Score =  127 bits (320), Expect = 1e-29
 Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 27/223 (12%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE--SLRQ 431
             +SF++   +   L+GESG GKST+A++L  L     G I  DGQD+     E   LR+
Sbjct: 308 DDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRR 367

Query: 432 TIGIIPQD---------TILFNDTLRYNILYGNPNASDQELCAAV--EVAQLKSFIMKLP 480
            I ++ QD         T+         I  G   A  +   A +   V     F+ + P
Sbjct: 368 RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP 427

Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
           +           +LSGG++QRV+IARA+   P ++I DE  S+LD+  +  +   L  L 
Sbjct: 428 H-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476

Query: 541 KNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
           +    T L I+H L+ +   AD + V   G +VE G  E +  
Sbjct: 477 EELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519


>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
           specific for the transport of dipeptides, oligopeptides
           (OppD), and nickel (NikDE).  The NikABCDE system of E.
           coli belongs to this family and is composed of the
           periplasmic binding protein NikA, two integral membrane
           components (NikB and NikC), and two ATPase (NikD and
           NikE).  The NikABCDE transporter is synthesized under
           anaerobic conditions to meet the increased demand for
           nickel resulting from hydrogenase synthesis.  The
           molecular mechanism of nickel uptake in many bacteria
           and most archaea is not known.  Many other members of
           this ABC family are also involved in the uptake of
           dipeptides and oligopeptides.  The oligopeptide
           transport system (Opp) is a five-component ABC transport
           composed of a membrane-anchored substrate binding
           proteins (SRP), OppA, two transmembrane proteins, OppB
           and OppC, and two ATP-binding domains, OppD and OppF..
          Length = 228

 Score =  132 bits (334), Expect = 3e-31
 Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 33/242 (13%)

Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI 409
           L++KN  + F                +SF I   +   L+GESG GKST+A+ +  L   
Sbjct: 2   LEVKNLSVSFPT----GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57

Query: 410 KGGIITIDGQDIKKITKESL---RQTIGIIPQD---------TI--LFNDTLR-YNILYG 454
             G I  DG+D+ K+++      R+ I ++ QD         TI     + LR +  L  
Sbjct: 58  TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK 117

Query: 455 NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPI 514
                +  L   V V   +  + + P+           +LSGG++QRV+IARA+  NP +
Sbjct: 118 KEARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKL 166

Query: 515 IIFDEATSSLDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVE 571
           +I DE TS+LD+  +  I   L  L +    T L I H L  +   AD + V   G +VE
Sbjct: 167 LIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226

Query: 572 SG 573
            G
Sbjct: 227 EG 228


>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
           transport system involved in resistant to organic
           solvents; ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score =  128 bits (324), Expect = 4e-30
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 18/232 (7%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I    ++ S+     + KG+  ++   +  A+IG SG GKST+ +L+  L     G + I
Sbjct: 1   IELRGLTKSFGGR-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59

Query: 417 DGQDIKKITKE---SLRQTIGIIPQDTILFND-TLRYNI---LYGNPNASDQELCAAVEV 469
           DG+DI  +++     LR+ +G++ Q   LF+  T+  N+   L  +   S++E+    E+
Sbjct: 60  DGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR---EI 116

Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
              K   + L    D    E    LSGG K+RV++ARA+  +P ++++DE T+ LD I  
Sbjct: 117 VLEKLEAVGLRGAEDLYPAE----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172

Query: 530 RHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
             I   + +L K    T++++ H L T    AD I V   G +V  G+ E L
Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224


>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components [Inorganic ion transport and
           metabolism / Coenzyme metabolism].
          Length = 258

 Score =  128 bits (323), Expect = 5e-30
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 26/242 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +   N+SF Y     I   +SF I   + T ++G +G GKST+ K L  L   K G + +
Sbjct: 3   LEVENLSFGYGG-KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI----------LYGNPNASDQELC-A 465
           DG+DI  ++ + L + +  +PQ          Y +          L+G P+  D+E+   
Sbjct: 62  DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEE 121

Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
           A+E+  L+    +  +           +LSGGE+QRV IARA+ +  PI++ DE TS LD
Sbjct: 122 ALELLGLEHLADRPVD-----------ELSGGERQRVLIARALAQETPILLLDEPTSHLD 170

Query: 526 IITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQG 582
           I  +  +   L  L++    T +++ H L+     AD++I+   G +V  G+ E ++++ 
Sbjct: 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230

Query: 583 GI 584
            +
Sbjct: 231 NL 232


>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 240

 Score =  125 bits (317), Expect = 3e-29
 Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N+S S+     + KGIS  +   +   +IG SG GKST+ + L  L +   G IT+
Sbjct: 3   IEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61

Query: 417 DGQDI-KKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
           DG+D+  K     LR+ +G++ Q   LF + T+  N+              A E A    
Sbjct: 62  DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELL 121

Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
             + L +  D    +    LSGG++QRV+IARA+  +P +++FDE TS+LD      +  
Sbjct: 122 EKVGLADKADAYPAQ----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177

Query: 535 ALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
            +  L++   T++I  H +    + AD +I  DQG ++E G  E     
Sbjct: 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226


>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
           division and chromosome partitioning].
          Length = 223

 Score =  124 bits (312), Expect = 9e-29
 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 23/233 (9%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I F NVS +Y       + +SF I   +   L G SG GKST+ KL+Y       G I +
Sbjct: 2   IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61

Query: 417 DGQDIKKITKES---LRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELCAA 466
           +G D+ ++       LR+ IG++ QD       T+  N  L   ++   P    + +   
Sbjct: 62  NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV 121

Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
           +++  LK     LP+           +LSGGE+QRV+IARAI+  P +++ DE T +LD 
Sbjct: 122 LDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170

Query: 527 ITERHIQTALATLSKNRTTLVIA-HRLSTITDADN-IIVFDQGTVVESGSHEN 577
                I      +++  TT+++A H L  +    + ++  + G +V   S   
Sbjct: 171 DLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223


>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 316

 Score =  122 bits (309), Expect = 2e-28
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 29/252 (11%)

Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD- 408
           L++KN  + F               G+SFE+   +   ++GESG GKS +AK +  L   
Sbjct: 2   LEVKNLSVSFPT----DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK 57

Query: 409 ----IKGGIITIDGQDIKKITKESLRQ----TIGIIPQDTIL-FNDTLRYN------ILY 453
               I GG I  DG+D+  ++++ LR+     I +I QD +   N  +         +  
Sbjct: 58  PNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL 117

Query: 454 GNPNASDQELCA-AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNP 512
                S +E    A+E+ +L    + +P+  +  +     +LSGG +QRV IA A+  NP
Sbjct: 118 HGKGLSKKEAKERAIELLEL----VGIPDP-ERRLKSYPHELSGGMRQRVMIAMALALNP 172

Query: 513 PIIIFDEATSSLDIITERHIQTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTV 569
            ++I DE T++LD+  +  I   L  L + + T  ++I H L  + + AD + V   G +
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232

Query: 570 VESGSHENLISQ 581
           VE G  E +   
Sbjct: 233 VEEGPVEEIFKN 244


>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 309

 Score =  123 bits (309), Expect = 2e-28
 Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 24/237 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I F NVS  Y +       ++  I   +   LIG SG GK+T  K++ RL +   G I I
Sbjct: 2   IEFENVSKRYGNKK-AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNI------LYGNPNASDQELCAAVEV 469
           DG+DI  +    LR+ IG + Q   LF + T+  NI      L  +     +     +++
Sbjct: 61  DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDL 120

Query: 470 AQL--KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
             L    +  + P+           +LSGG++QRV +ARA+  +PPI++ DE   +LD I
Sbjct: 121 VGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALDPI 169

Query: 528 TERHIQTALATLSKN--RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
           T + +Q  +  L K   +T + + H +   +  AD I V D G +V+  + + +++ 
Sbjct: 170 TRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226


>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
           involved in the uptake of siderophores, heme, and
           vitamin B12, are widely conserved in bacteria and
           archaea.  Only very few species lack representatives of
           the siderophore family transporters.  The E. coli BtuCD
           protein is an ABC transporter mediating vitamin B12
           uptake.  The two ATP-binding cassettes (BtuD) are in
           close contact with each other, as are the two
           membrane-spanning subunits (BtuC); this arrangement is
           distinct from that observed for the E. coli lipid
           flippase MsbA.  The BtuC subunits provide 20
           transmembrane helices grouped around a translocation
           pathway that is closed to the cytoplasm by a gate
           region, whereas the dimer arrangement of the BtuD
           subunits resembles the ATP-bound form of the Rad50 DNA
           repair enzyme.  A prominent cytoplasmic loop of BtuC
           forms the contact region with the ATP-binding cassette
           and represent a conserved motif among the ABC
           transporters..
          Length = 180

 Score =  122 bits (309), Expect = 2e-28
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 42/217 (19%)

Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
            N+S  Y     +   +S  I   +   ++G +G GKST+ K L  L     G I +DG+
Sbjct: 3   ENLSVGYGGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61

Query: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479
           D+  ++ + L + I  +PQ                           A+E+  L     + 
Sbjct: 62  DLASLSPKELARKIAYVPQ---------------------------ALELLGLAHLADR- 93

Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
              ++         LSGGE+QRV +ARA+ + PPI++ DE TS LDI  +  +   L  L
Sbjct: 94  --PFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143

Query: 540 SK--NRTTLVIAHRLS-TITDADNIIVFDQGTVVESG 573
           ++   +T +++ H L+     AD +I+   G +V  G
Sbjct: 144 ARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180


>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 275

 Score =  122 bits (308), Expect = 2e-28
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 7/234 (2%)

Query: 355 GHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           G +   +++  Y    N + + ISF I+P ++  L+G +G GKST+     RL + +G I
Sbjct: 1   GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI 60

Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVEVAQ 471
             IDG     +  +  R+  G+IPQ   +F+ T R N+   +P    SD+E+    E   
Sbjct: 61  -QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVG 116

Query: 472 LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
           LKS I + P   D V+ + G  LS G KQ + +AR++L    I++ DE ++ LD IT + 
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176

Query: 532 IQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIY 585
           I+  L     + T ++  HR+  + +    +V ++  V +  S + L+++   +
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF 230


>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 252

 Score =  122 bits (307), Expect = 3e-28
 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 360 NNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
            N+S  Y            +S EI   +   ++GESG GKST+A+LL  L     G I +
Sbjct: 7   RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66

Query: 417 DGQDI-KKITKESLRQTIGIIPQDTI-----------LFNDTLRYNILYGNPNASDQELC 464
           DG+ +  K   ++  + + ++ QD             + ++ LR             EL 
Sbjct: 67  DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR-PHGLSKSQQRIAELL 125

Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
             V +    SF+ + P+           +LSGG++QR++IARA++  P ++I DE TS+L
Sbjct: 126 DQVGLP--PSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172

Query: 525 DIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
           D+  +  I   L  L K R  T L I+H L+ +    D I V D G +VE G  E L+S
Sbjct: 173 DVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231


>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 352

 Score =  121 bits (305), Expect = 5e-28
 Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 25/238 (10%)

Query: 352 IKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG 411
           +    +   NVS S+         IS +I   +   L+G SG GK+T+ +++        
Sbjct: 1   MPKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59

Query: 412 GIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG-------NPNASDQEL 463
           G I +DG+DI  +  E  ++ IG++ Q   LF + T+  N+ +G               +
Sbjct: 60  GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117

Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
             A+E+  L+ F  + P+           +LSGG++QRV++ARA++  P +++ DE  S+
Sbjct: 118 EEALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSA 166

Query: 524 LDIITERHIQTALATLSKNR--TTLVIAH-RLSTITDADNIIVFDQGTVVESGSHENL 578
           LD      ++  L  L +    T + + H +   +  +D I V + G + + G+ E +
Sbjct: 167 LDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224


>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 268

 Score =  121 bits (304), Expect = 7e-28
 Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 53/245 (21%)

Query: 339 IEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKST 398
           +E++N    K   +  G        F    +     G+SF I   +   L+GESG GKST
Sbjct: 5   LEVKN--LKKYFPVGKG--------FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKST 54

Query: 399 VAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA 458
           + +L+  L +   G I  +G+DI K++KE  R+ +                         
Sbjct: 55  LGRLILGLEEPTSGEILFEGKDITKLSKEERRERV------------------------- 89

Query: 459 SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFD 518
              EL   V +   + F+ + P+           +LSGG++QR+ IARA+  NP +I+ D
Sbjct: 90  --LELLEKVGLP--EEFLYRYPH-----------ELSGGQRQRIGIARALALNPKLIVAD 134

Query: 519 EATSSLDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSH 575
           E  S+LD+  +  I   L  L +    T L I+H LS +   +D I V   G +VE G  
Sbjct: 135 EPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPT 194

Query: 576 ENLIS 580
           E + S
Sbjct: 195 EEVFS 199


>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 253

 Score =  120 bits (302), Expect = 1e-27
 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 20/238 (8%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI--- 413
           I   +++  Y   +   K I+ +I  +K TALIG SG GKST+ + L R+ D+  G    
Sbjct: 8   IEVRDLNLYYGDKH-ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66

Query: 414 --ITIDGQDI--KKITKESLRQTIGIIPQDTILFNDTLRYNILYG--NPNASDQELCAAV 467
             + +DG++I   K+    LR+ +G++ Q    F  ++  N+ YG       D+EL   V
Sbjct: 67  GEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIV 126

Query: 468 EVAQLKSFIMKLPNGYDTV---VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
           E +      +K    +D V   + +  L LSGG++QR+ IARA+   P +++ DE TS+L
Sbjct: 127 ESS------LKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180

Query: 525 DIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
           D I+   I+  +  L K  T +++ H +      +D    F  G +VE G  + + + 
Sbjct: 181 DPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238


>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
           component of a bacterial solute transporter that serves
           a protective role to cells growing in a hyperosmolar
           environment.  ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition, to the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 242

 Score =  120 bits (302), Expect = 1e-27
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 17/232 (7%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I F NV+  Y         ++ EIA  +   LIG SG GK+T  K++ RL +   G I I
Sbjct: 1   IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNI-----LYGNPNASDQELCAAVEVA 470
           DG+DI++     LR+ IG + Q   LF + T+  NI     L   P    +E        
Sbjct: 61  DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE-----RAD 115

Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
           +L + +   P  +         +LSGG++QRV +ARA+  +PP+++ DE   +LD IT  
Sbjct: 116 ELLALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172

Query: 531 HIQTALATLSK--NRTTLVIAHRL-STITDADNIIVFDQGTVVESGSHENLI 579
            +Q     L +   +T + + H +      AD I +   G +V+ G+ + ++
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224


>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 339

 Score =  119 bits (301), Expect = 2e-27
 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 26/241 (10%)

Query: 357 IVFNNVSFSY----NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
           I   NVS ++             +S EI   +   +IG SG GKST+ +L+  L     G
Sbjct: 2   IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61

Query: 413 IITIDGQDIKKITKESL---RQTIGIIPQDTILFND-TLRYNILY-----GNPNASDQEL 463
            + +DGQD+  +++  L   RQ IG+I Q   L +  T+  N+ +     G P A  ++ 
Sbjct: 62  SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ- 120

Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
                VA+L   +     G          +LSGG+KQRV+IARA+  NP I++ DEATS+
Sbjct: 121 ----RVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSA 171

Query: 524 LDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
           LD  T + I   L  +++    T ++I H +  +    D + V DQG +VE G+   + +
Sbjct: 172 LDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231

Query: 581 Q 581
            
Sbjct: 232 N 232


>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
           Protein Dependent) systems that are largely represented
           in archaea and eubacteria and are primarily involved in
           scavenging solutes from the environment.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 178

 Score =  119 bits (301), Expect = 2e-27
 Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 46/218 (21%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +   NVS  Y     +   +S  I   +  AL+G SG GKST+ + +  L +   G I I
Sbjct: 1   LELKNVSKRYGQKT-VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59

Query: 417 DGQDIKKITKES--LRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLK 473
           DG+D+  +  E   LR+ IG++ QD  LF   T+  NI  G                   
Sbjct: 60  DGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------- 100

Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
                               LSGG++QRV++ARA+  +P +++ DE TS+LD IT R ++
Sbjct: 101 --------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140

Query: 534 TALATLSKN--RTTLVIAHRLS-TITDADNIIVFDQGT 568
             L +L      T +++ H L      AD ++V   G 
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178


>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  The CbiMNQO family ABC transport system is
           involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 205

 Score =  119 bits (300), Expect = 2e-27
 Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 15/207 (7%)

Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
           N+SFSY     I   +S ++   +  AL G++G GK+T+AK+L  L     G I ++G  
Sbjct: 4   NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-- 61

Query: 421 IKKITKESLRQTIGIIPQDT--ILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
            K I  +  R++IG + QD    LF D++R  +L G          A   +  L  + +K
Sbjct: 62  -KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120

Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
             +            LSGG+KQR++IA A+L    ++IFDE TS LD      +   +  
Sbjct: 121 ERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE 171

Query: 539 LSK-NRTTLVIAHRLSTITDADNIIVF 564
           L+   +  +VI H    +    + ++ 
Sbjct: 172 LAAQGKAVIVITHDYEFLAKVCDRVLL 198


>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 226

 Score =  119 bits (300), Expect = 2e-27
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 14/225 (6%)

Query: 357 IVFNNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           I   NVS  Y          K ++ EI   +  A++G SG GKST+  LL  L     G 
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 414 ITIDGQDIKKITKESL----RQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVE 468
           + I+G+D+ K++++ L    R+ IG + Q+  L  D T+  N+      A          
Sbjct: 62  VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121

Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
             +L    +++    D ++ ++  +LSGG++QRV+IARA++ NP II+ DE T +LD  T
Sbjct: 122 AEEL----LEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177

Query: 529 ERHIQTALATLSK--NRTTLVIAHRLSTITDADNIIVFDQGTVVE 571
            + +   L  L+K   +T +++ H       AD +I    G + E
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222


>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
           transport system.  Phosphonates are a class of
           organophosphorus compounds characterized by a chemically
           stable carbon-to-phosphorus (C-P) bond.  Phosphonates
           are widespread among naturally occurring compounds in
           all kingdoms of wildlife, but only procaryotic
           microorganisms are able to cleave this bond.  Certain
           bacteria such as E. coli can use alkylphosphonates as a
           phosphorus source.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 241

 Score =  119 bits (299), Expect = 3e-27
 Identities = 77/246 (31%), Positives = 113/246 (45%), Gaps = 38/246 (15%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N+S +Y +     K +S  I P +  ALIG SG GKST+ + L  L +   G + I
Sbjct: 1   IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60

Query: 417 DGQDIKKITKESLRQT---IGIIPQDTILFNDTLRY----NILYG--------------N 455
           DG DI K+  ++LRQ    IG+I Q    FN   R     N+L G               
Sbjct: 61  DGTDINKLKGKALRQLRRQIGMIFQQ---FNLIERLSVLENVLSGRLGRRSTWRSLFGLF 117

Query: 456 PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPII 515
           P    Q   AA+E   L     +           R  +LSGG++QRV+IARA+++ P +I
Sbjct: 118 PKEEKQRALAALERVGLLDKAYQ-----------RADQLSGGQQQRVAIARALMQQPKLI 166

Query: 516 IFDEATSSLDIITERHIQTALATL--SKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVES 572
           + DE  +SLD  + R +   L  +   +  T +V  H++    + AD I+    G +V  
Sbjct: 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226

Query: 573 GSHENL 578
           G    L
Sbjct: 227 GPPAEL 232


>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
           Transporters-like subgroup.  This family is comprised of
           proteins involved in the transport of apparently
           unrelated solutes and proteins specific for di- and
           oligosaccharides and polyols.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.   ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 213

 Score =  118 bits (298), Expect = 4e-27
 Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 12/221 (5%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +    +S +Y         +S  + P +  AL+G SG GK+T+ +L+  L     G I I
Sbjct: 1   LELKGLSKTYGSVR-ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
           DG+D+  +  E  R+ IG++ QD  LF + T+  NI +G      + +  A   A+++  
Sbjct: 60  DGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFG---LKLRGVPKAEIRARVREL 114

Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
           +  +  G + ++     +LSGG++QRV++ARA+ + P +++ DE  S+LD      ++  
Sbjct: 115 LELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172

Query: 536 LATLSKNR--TTLVIAHRLS-TITDADNIIVFDQGTVVESG 573
           L  L +    TT+ + H     +  AD I V ++G +V+ G
Sbjct: 173 LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213


>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
           ATP-binding cassette, macrolide-specific ABC-type efflux
           carrier (MacAB), and proteins involved in cell division
           (FtsE), and release of liporoteins from the cytoplasmic
           membrane (LolCDE).  They are clustered together
           phylogenetically.  MacAB is an exporter that confers
           resistance to macrolides, while the LolCDE system is not
           a transporter at all.  An FtsE null mutants showed
           filamentous growth and appeared viable on high salt
           medium only, indicating a role for FtsE in cell division
           and/or salt transport.  The LolCDE complex catalyses the
           release of lipoproteins from the cytoplasmic membrane
           prior to their targeting to the outer membrane..
          Length = 218

 Score =  118 bits (297), Expect = 5e-27
 Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 27/229 (11%)

Query: 357 IVFNNVSFSYNHHNC---IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           I   N+S +Y          KG+S  I   +  A++G SG GKST+  +L  L     G 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 414 ITIDGQDIKKITKESL----RQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQEL 463
           + +DG DI K++++ L    R+ IG + Q   L  D T   N+     L G P    +E 
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120

Query: 464 C-AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
               +E   L   +   P+           +LSGG++QRV+IARA+  +P II+ DE T 
Sbjct: 121 AEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTG 169

Query: 523 SLDIITERHIQTALATLSK--NRTTLVIAHRLSTITDADNIIVFDQGTV 569
           +LD  T + +   L  L+K    T +V+ H       AD II    G +
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218


>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
           organic solvents, ATPase component [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 263

 Score =  116 bits (291), Expect = 3e-26
 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 13/233 (5%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I    V+ S+     I  G+  ++   +  A++G SG GKST+ +L+  L     G I I
Sbjct: 9   IEVRGVTKSFGDR-VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67

Query: 417 DGQDIKKITKE---SLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQL 472
           DG+DI ++++E    +R+ +G++ Q   LF+  T+  N+ +     +        E+  +
Sbjct: 68  DGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLM 127

Query: 473 KSFIMKL-PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
           K  ++ L     D    E    LSGG ++RV++ARAI  +P ++  DE TS LD I+   
Sbjct: 128 KLELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183

Query: 532 IQTALATLSK--NRTTLVIAHRLSTI-TDADNIIVFDQGTVVESGSHENLISQ 581
           I   +  L+     T +++ H L ++ T AD + V   G V+  G+ E L++ 
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236


>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
           [Carbohydrate transport and metabolism].
          Length = 338

 Score =  115 bits (289), Expect = 3e-26
 Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 24/233 (10%)

Query: 356 HIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT 415
            +   NV  S+     + K ++ +I   +   L+G SG GKST+ +++  L +   G I 
Sbjct: 3   ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61

Query: 416 IDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG--NPNASDQELCAAVEVA-- 470
           IDG+D+  +  E  ++ I ++ Q+  L+ + T+  NI +G         E+   V+    
Sbjct: 62  IDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119

Query: 471 --QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
              L+  + + P            +LSGG++QRV++ARA+++ P + + DE  S+LD   
Sbjct: 120 LLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL 168

Query: 529 ERHIQTALATLSKNR--TTLVIAHRLSTI-TDADNIIVFDQGTVVESGSHENL 578
              +++ +  L +    TT+ + H      T AD I+V + G + + G+   L
Sbjct: 169 RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221


>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea.  This transport system
           belong to the larger ATP-Binding Cassette (ABC)
           transporter superfamily.  The characteristic feature of
           these transporters is the obligatory coupling of ATP
           hydrolysis to substrate translocation.  ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 269

 Score =  115 bits (289), Expect = 4e-26
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 25/220 (11%)

Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR----- 430
           +S ++   +   ++G SG GKST+ + + RL +   G + IDGQDI  ++++ LR     
Sbjct: 43  VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102

Query: 431 ------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYD 484
                 Q+  ++P  T+L N      +        ++    A+E+  L+ +  K P+   
Sbjct: 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD--- 159

Query: 485 TVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-- 542
                   +LSGG +QRV +ARA+  +P I++ DEA S+LD +  R +Q  L  L     
Sbjct: 160 --------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211

Query: 543 RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
           +T + I H L   +   D I +   G +V+ G+ E +++ 
Sbjct: 212 KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251


>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
           is an ABC-type transporter encoded by metN of the metNPQ
           operon in Bacillus subtilis that is involved in
           methionine transport.  Other members of this system
           include the MetP permease and  the MetQ substrate
           binding protein.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 233

 Score =  114 bits (288), Expect = 6e-26
 Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 19/237 (8%)

Query: 357 IVFNNVSFSYNHHNCIF---KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           I   NVS  +          K +S  +   +   +IG SG GKST+ + +  L     G 
Sbjct: 2   IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 414 ITIDGQDIKKITKESL---RQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEV 469
           + +DG D+  ++ + L   R+ IG+I Q   L +  T+  N+          E+ A V  
Sbjct: 62  VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL------PLEI-AGVPK 114

Query: 470 AQLKSFIMKLPN--GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
           A+++  +++L    G +        +LSGG+KQRV IARA+  NP +++ DEATS+LD  
Sbjct: 115 AEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174

Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
           T + I   L  +++    T ++I H +  +    D + V ++G VVE G+ E + + 
Sbjct: 175 TTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231


>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
           components of the bacterial periplasmic histidine and
           glutamine permeases, repectively.  Histidine permease is
           a multisubunit complex containing the HisQ and HisM
           integral membrane subunits and two copies of HisP.  HisP
           has properties intermediate between those of integral
           and peripheral membrane proteins and is accessible from
           both sides of the membrane, presumably by its
           interaction with HisQ and HisM.  The two HisP subunits
           form a homodimer within the complex.  The domain
           structure of the amino acid uptake systems is typical
           for prokaryote extracellular solute binding
           protein-dependent uptake systems.  All of the amino acid
           uptake systems also have at least one, and in a few
           cases, two extracellular solute binding proteins located
           in the periplasm of Gram-negative bacteria, or attached
           to the cell membrane of Gram-positive bacteria.  The
           best-studied member of the PAAT (polar amino acid
           transport) family is the HisJQMP system of S.
           typhimurium, where HisJ is the extracellular solute
           binding proteins and HisP is the ABC protein..
          Length = 213

 Score =  113 bits (284), Expect = 2e-25
 Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 24/225 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N+  S+   + + KGI   +   +   +IG SG GKST+ + +  L +   G I I
Sbjct: 1   IEIKNLHKSFGDFH-VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59

Query: 417 DGQDIKKITKE--SLRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELC-AA 466
           DG  +    K    LRQ +G++ Q        T+L N TL    + G   A  +E     
Sbjct: 60  DGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119

Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
           +E   L       P            +LSGG++QRV+IARA+  NP +++FDE TS+LD 
Sbjct: 120 LEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168

Query: 527 ITERHIQTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTV 569
                +   +  L++   T+V+  H +    + AD +I  D G +
Sbjct: 169 ELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213


>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
           nucleotide-binding protein that binds FtsX to form a
           heterodimeric ATP-binding cassette (ABC)-type
           transporter that associates with the bacterial inner
           membrane.  The FtsE/X transporter is thought to be
           involved in cell division and is important for assembly
           or stability of the septal ring..
          Length = 214

 Score =  112 bits (282), Expect = 3e-25
 Identities = 70/212 (33%), Positives = 104/212 (49%), Gaps = 21/212 (9%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I F NV+ +Y +      GI+  I+  +   L+G SG GKST+ KL+Y+      G I +
Sbjct: 1   IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60

Query: 417 DGQDIKKITKES---LRQTIGIIPQDTILFNDTLRYN-------ILYGNPNASDQELCAA 466
           +GQD+  +   +   LR+ IG++ QD  L  D   Y        +    P    + + AA
Sbjct: 61  NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAA 120

Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
           +E+  L      LP             LSGGE+QRV+IARAI+ +P I+I DE T +LD 
Sbjct: 121 LELVGLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169

Query: 527 ITERHIQTALATLSKNRTTLVIAHRLSTITDA 558
            T   I   L  ++K  TT+V+A     + D 
Sbjct: 170 DTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201


>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
           system, ATPase component.  The biological function of
           this family is not well characterized, but display ABC
           domains similar to members of ABCA subfamily.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score =  112 bits (281), Expect = 4e-25
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 24/226 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +   N++  Y        G+S  +       L+G +G GK+T+ ++L  L     G I I
Sbjct: 1   LQLENLTKRYGK-KRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYG-NPNASDQELCAAVEV 469
           DGQD+ K   + LR+ IG +PQ+  ++      + L Y   L G         +   +E+
Sbjct: 59  DGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117

Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
             L     K               LSGG ++RV IA+A++ +P I+I DE T+ LD   E
Sbjct: 118 VNLGDRAKKKIG-----------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD-PEE 165

Query: 530 RH-IQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
           R   +  L+ L ++R  ++  H +  +    + + V ++G +V  G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211


>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
           [Energy production and conversion / Inorganic ion
           transport and metabolism].
          Length = 245

 Score =  111 bits (279), Expect = 6e-25
 Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 13/210 (6%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
           + +SFE    + T L+GE+G GK+T+ +++  L     G +TIDG D  +     +R+ I
Sbjct: 19  RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKI 77

Query: 434 GIIPQDTILFND-TLRYNILY-GNPNA-SDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490
           G++  +  L+   T R N+ Y    N  S +E+ A +     K   +         +  R
Sbjct: 78  GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL-SKRLQL------LEYLDRR 130

Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIA 549
             + S G KQ+V+IARA++ +P I++ DE TS LDI T R     +  L ++ R  +  +
Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190

Query: 550 HRLSTITD-ADNIIVFDQGTVVESGSHENL 578
           H +  +    D +IV  +G VV  GS E L
Sbjct: 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220


>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 254

 Score =  111 bits (278), Expect = 7e-25
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 29/239 (12%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N++ SY +   + + IS  +   + TALIG +G GKST+ K +  L     G I I
Sbjct: 5   IEVENLTVSYGNRP-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63

Query: 417 DGQDIKKITKESLRQTIGIIPQ-------------DTILFNDTLRYNILYGNPNASDQEL 463
            G   K + K   R  IG +PQ             D +L     +            +++
Sbjct: 64  FG---KPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120

Query: 464 CAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
             A+E   ++    +        +GE    LSGG+KQRV +ARA+ +NP +++ DE  + 
Sbjct: 121 DEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTG 169

Query: 524 LDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQ 581
           +D+  ++ I   L  L  + +T L++ H L  +    + ++     ++ SG  E ++++
Sbjct: 170 VDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228


>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
           ATPase component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score =  111 bits (278), Expect = 7e-25
 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 14/234 (5%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N+S +Y   +   K ++ EI   +  A+IG SG GKST+ + L  L D   G I  
Sbjct: 4   IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63

Query: 417 DGQDIKKITKESLRQ---TIGIIPQDTILFND-TLRYNILYGNPN-----ASDQELCAAV 467
           +G  I K+  + LR+    IG+I Q   L    ++  N+L G         S   L +  
Sbjct: 64  NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123

Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
           + AQ    + ++  G      +R   LSGG++QRV+IARA+++ P II+ DE  +SLD  
Sbjct: 124 DKAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181

Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
           + + +   L  +++    T +V  H++      AD II    G +V  G    L
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235


>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
           transporters.  This family includes transporters
           involved in the uptake of various metallic cations such
           as iron, manganese, and zinc.  The ATPases of this group
           of transporters are very similar to members of
           iron-siderophore uptake family suggesting that they
           share a common ancestor.  The best characterized
           metal-type ABC transporters are the YfeABCD system of Y.
           pestis, the SitABCD system of Salmonella enterica
           serovar Typhimurium, and the SitABCD transporter of
           Shigella flexneri.  Moreover other uncharacterized
           homologs of these metal-type transporters are mainly
           found in pathogens like Haemophilus or enteroinvasive E.
           coli isolates..
          Length = 213

 Score =  110 bits (278), Expect = 7e-25
 Identities = 62/229 (27%), Positives = 107/229 (46%), Gaps = 31/229 (13%)

Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
             +++ SY  H  + + +SFE+ P +  A++G +G GKST+ K +  L     G I + G
Sbjct: 2   VEDLTVSYGGHP-VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60

Query: 419 QDIKKITKESLRQTIGIIPQ-------------DTILFNDTLRYNILYGNPNASDQELCA 465
           + ++K      R+ IG +PQ             D +L        +      A   ++  
Sbjct: 61  KPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115

Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
           A+E   L           D  +GE    LSGG++QRV +ARA++++P +++ DE  + +D
Sbjct: 116 ALERVGLSELA-------DRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164

Query: 526 IITERHIQTALATL-SKNRTTLVIAHRLSTITDADNIIVFDQGTVVESG 573
             T+  I   L  L  +  T LV+ H L  + +  + ++    TVV SG
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213


>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component [Inorganic ion transport and
           metabolism].
          Length = 248

 Score =  109 bits (274), Expect = 2e-24
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 27/221 (12%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +    VS S+     + + I+  +   +  A++G SG GKST+ +L+  L     G + +
Sbjct: 4   LEIEGVSKSFGGVE-VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62

Query: 417 DGQDIKKITKESLRQTIGIIPQD-------TILFNDTLRYNILYGNPNASDQELCAAVEV 469
           DG+ +     +     IG + Q+       T+L N  L   +   +   + +     +E+
Sbjct: 63  DGRPVTGPGPD-----IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL 117

Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
             L  F  K P+           +LSGG +QRV+IARA+   P +++ DE   +LD +T 
Sbjct: 118 VGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166

Query: 530 RHIQTALATL--SKNRTTLVIAHRLS-TITDADNIIVFDQG 567
             +Q  L  L     +T L++ H +   +  AD ++V    
Sbjct: 167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207


>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
           ATP-binding subunits of the bacterial ABC-type nitrate
           and sulfonate transport systems, respectively.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 220

 Score =  108 bits (271), Expect = 6e-24
 Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 31/230 (13%)

Query: 357 IVFNNVSFSY---NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
           +   NVS +Y          + IS  +   +  AL+G SG GKST+ +++  L     G 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 414 ITIDGQDIKKITKESLRQTIGIIPQDTILFN-DTLRYNILYG------NPNASDQELCAA 466
           + +DG+ +     +      G + Q   L    T+  N+  G          + +     
Sbjct: 61  VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115

Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
           +E+  L  F    P+           +LSGG +QRV++ARA+  +P +++ DE  S+LD 
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164

Query: 527 ITERHIQTALATL--SKNRTTLVIAHRLS-TITDADNIIVFDQ--GTVVE 571
           +T   +Q  L  +     +T L++ H +   +  AD ++V     G +V 
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214


>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
           [Coenzyme metabolism].
          Length = 231

 Score =  108 bits (270), Expect = 6e-24
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 28/239 (11%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +  ++V FSY H    F      +   +  A++G SG GKST+  L+        G I I
Sbjct: 2   LALDDVRFSYGHLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI 58

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG-NP----NASDQELCAAVEVA 470
           +G D          + + ++ Q+  LF   T+  NI  G +P    NA  +E   A   A
Sbjct: 59  NGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA-AA 115

Query: 471 Q--LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
           Q  L  F+ +LP            +LSGG++QRV++AR +++  PI++ DE  S+LD   
Sbjct: 116 QVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164

Query: 529 ERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGI 584
              +   ++ L   R  T L++ H        AD ++  D G +   GS + L+S    
Sbjct: 165 RAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223


>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 157

 Score =  108 bits (270), Expect = 6e-24
 Identities = 58/212 (27%), Positives = 85/212 (40%), Gaps = 58/212 (27%)

Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
             N+SF Y         +S  +   +  AL+G +G GKST+ + +  L     G I IDG
Sbjct: 2   IENLSFRYGGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60

Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
           +DI K+  E                   LR  I Y               V QL      
Sbjct: 61  KDIAKLPLE------------------ELRRRIGY---------------VPQL------ 81

Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
                           SGG++QRV++ARA+L NP +++ DE TS LD  +   +   L  
Sbjct: 82  ----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125

Query: 539 LS-KNRTTLVIAHRLSTITDA-DNIIVFDQGT 568
           L+ + RT +++ H       A D +IV   G 
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157


>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
           belongs to a multisubunit transporter involved in drug
           resistance (BcrA and DrrA), nodulation, lipid transport,
           and lantibiotic immunity.  In bacteria and archaea,
           these transporters usually include an ATP-binding
           protein and one or two integral membrane proteins.
           Eukaryote systems of the ABCA subfamily display ABC
           domains that are quite similar to this family.  The
           ATP-binding domain shows the highest similarity between
           all members of the ABC transporter family.  ABC
           transporters are a subset of nucleotide hydrolases that
           contain a signature motif, Q-loop, and H-loop/switch
           region, in addition to, the Walker A motif/P-loop and
           Walker B motif commonly found in a number of ATP- and
           GTP-binding and hydrolyzing proteins..
          Length = 173

 Score =  107 bits (269), Expect = 9e-24
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 44/215 (20%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N+S  Y         IS  +   +   L+G +G GK+T+ K++  L     G I +
Sbjct: 1   IEVRNLSKRYGKKT-ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
            G+DIKK   E +++ IG +P++  L                                  
Sbjct: 60  LGKDIKK-EPEEVKRRIGYLPEEPSL---------------------------------- 84

Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
                 Y+ +     LKLSGG KQR+++A+A+L +P ++I DE TS LD  + R     L
Sbjct: 85  ------YENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138

Query: 537 ATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTV 569
             L K   T++++ H L       D + + + G +
Sbjct: 139 RELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173


>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
           ATPase component [Amino acid transport and metabolism].
          Length = 386

 Score =  105 bits (264), Expect = 3e-23
 Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 27/223 (12%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLR--- 430
              S ++   +   ++G SG GKST+ +LL RL +   G I +DG+DI K++   LR   
Sbjct: 45  NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104

Query: 431 --------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCA-AVEVAQLKSFIMKLPN 481
                   Q+  ++P  T+L N      +  G P A  +E    A+E+  L+ +  K PN
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEV-QGVPKAEREERALEALELVGLEGYADKYPN 163

Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
                      +LSGG +QRV +ARA+  +P I++ DEA S+LD +    +Q  L  L  
Sbjct: 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212

Query: 542 N--RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
              +T + I H L   +   D I +   G +V+ G+ E ++  
Sbjct: 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255


>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
           [Carbohydrate transport and metabolism].
          Length = 500

 Score =  105 bits (264), Expect = 3e-23
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 21/227 (9%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT-KESLRQT 432
            G+S  + P +  AL+GE+G GKST+ K+L  +Y    G I IDG+ +   + +++L   
Sbjct: 25  DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84

Query: 433 IGIIPQDTILFND-TLRYNILYGNPNAS-----DQELCAAVEVAQLKSFIMKLPNGYDTV 486
           I  + Q+  L  + ++  NI  G          D++         L    + L    DT+
Sbjct: 85  IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLAR--LGLDIDPDTL 142

Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL----SKN 542
           VG+    LS  ++Q V IARA+  +  ++I DE T++L   T +  +     +    ++ 
Sbjct: 143 VGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL---TVKETERLFDLIRRLKAQG 195

Query: 543 RTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
              + I+HRL  + + AD I V   G VV +       S+  +   M
Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLM 242



 Score = 83.3 bits (206), Expect = 2e-16
 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 19/229 (8%)

Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES---- 428
            + +SF +   +   + G  G G++ +A+ L+       G I +DG+ ++  +       
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334

Query: 429 -------LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
                   R++ G++   +I  N TL     +      D+    A+    ++   +K P+
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394

Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
               +       LSGG +Q+V +AR +  +P ++I DE T  +D+  +  I   +  L+ 
Sbjct: 395 PEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA 449

Query: 542 N-RTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSM 588
             +  L+I+  L  +   +D I+V  +G +V     E   ++  I  + 
Sbjct: 450 EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE-ATEEAIMAAA 497


>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
           (EP) precursor transport, regulation of
           lipid-trafficking mechanisms, and pleiotropic drug
           resistance (DR).  DR is a well-described phenomenon
           occurring in fungi and shares several similarities with
           processes in bacteria and higher eukaryotes.  Compared
           to other members of the ABC transporter subfamilies, the
           ABCG transporter family is composed of proteins that
           have an ATP-binding cassette domain at the N-terminus
           and a TM (transmembrane) domain at the C-terminus..
          Length = 194

 Score =  104 bits (261), Expect = 7e-23
 Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 48/228 (21%)

Query: 357 IVFNNVSFS-----YNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDI 409
           + F N++ +           + K +S +  P + TA++G SG GKST+   L   R    
Sbjct: 4   LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63

Query: 410 KGGIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVE 468
             G + I+G   + + K S R+ IG +PQD IL    T+R  +++               
Sbjct: 64  VSGEVLING---RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF--------------- 105

Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
            A+L+                    LSGGE++RVSIA  ++ NP ++  DE TS LD  +
Sbjct: 106 AAKLRG-------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146

Query: 529 ERHIQTALATLSK-NRTTLVIAHRLST--ITDADNIIVFDQGTVVESG 573
              + + L  L+   RT +   H+ S+      D +++  QG V+  G
Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194


>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
           a bacterial ABC-type Na+ transport system called NatAB,
           which catalyzes ATP-dependent electrogenic Na+ extrusion
           without mechanically coupled proton or K+ uptake.  NatB
           possess six putative membrane spanning regions at its
           C-terminus.  In B. subtilus, NatAB is inducible by
           agents such as ethanol and protonophores, which lower
           the protonmotive force across the membrane.  The closest
           sequence similarity to NatA is exhibited by DrrA of the
           two-component daunomycin- and doxorubicin-efflux system.
            Hence, the functional NatAB is presumably assembled
           with two copies of a single ATP-binding protein and a
           single intergral membrane protein..
          Length = 218

 Score =  103 bits (259), Expect = 1e-22
 Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 21/209 (10%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
            G+SF + P + T L+G +G GK+T  ++L  L +   G  T+DG D+ K   E+ R+ +
Sbjct: 22  DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA-RRRL 80

Query: 434 GIIPQDTILFND-TLRYNI-----LYG-NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486
           G +   T L++  T R N+     LYG   +     L    +   ++  + +        
Sbjct: 81  GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-------- 132

Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL-SKNRTT 545
              R    S G +Q+V+IARA++ +PP+++ DE T+ LD++  R ++  +  L +  +  
Sbjct: 133 ---RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI 189

Query: 546 LVIAHRLSTITD-ADNIIVFDQGTVVESG 573
           L   H +  +    D ++V  +G VV  G
Sbjct: 190 LFSTHIMQEVERLCDRVVVLHRGRVVYEG 218


>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
           duplicated ATPase component [General function prediction
           only].
          Length = 534

 Score =  103 bits (259), Expect = 1e-22
 Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 30/231 (12%)

Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428
           H     GIS  +   +   L+GESG GKST+   L RL   +G I   DGQDI  ++++ 
Sbjct: 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIR-FDGQDIDGLSRKE 357

Query: 429 ---LRQTIGIIPQD---------TI--LFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
              LR+ + ++ QD         T+  +  + LR +    +    DQ +  A+E   L  
Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP 417

Query: 475 FIM-KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
               + P+           + SGG++QR++IARA++  P +I+ DE TS+LD   +  + 
Sbjct: 418 ATRNRYPH-----------EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466

Query: 534 TALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
             L  L +    + L I+H L+ +      +IV   G +VE G  E + + 
Sbjct: 467 DLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517



 Score = 98.0 bits (244), Expect = 7e-21
 Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 22/247 (8%)

Query: 361 NVSFSYNHHNC-IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG-----GII 414
           +V+F          KGISF+I   +  AL+GESG GKS  A  +  L          G I
Sbjct: 13  SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72

Query: 415 TIDGQDIKKITKESLRQT----IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
             DG+D+   ++  LR      IG+I Q+ +   + L + I  G   A    L   +  A
Sbjct: 73  LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPL-HTI--GKQLAEVLRLHRGLSRA 129

Query: 471 QLKSFIMKLPNGYDTVVGERGLK-----LSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
             ++  ++L         E+ L      LSGG++QRV IA A+   P ++I DE T++LD
Sbjct: 130 AARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189

Query: 526 IITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ- 581
           +  +  I   L  L        L I H L  +   AD + V   G +VE+G+ E L +  
Sbjct: 190 VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAP 249

Query: 582 GGIYTSM 588
              YT  
Sbjct: 250 QHPYTRK 256


>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
           LIV-I bacterial ABC-type two-component transport system
           that imports neutral, branched-chain amino acids.  The
           E. coli branched-chain amino acid transporter comprises
           a heterodimer of ABC transporters (LivF and LivG), a
           heterodimer of six-helix TM domains (LivM and LivH), and
           one of two alternative soluble periplasmic substrate
           binding proteins (LivK or LivJ).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules..
          Length = 222

 Score =  103 bits (258), Expect = 2e-22
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 14/213 (6%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKI-TKESLR 430
           I  G+S  +   +  AL+G +G GK+T+ K +  L   + G I  DG+DI  +   E  R
Sbjct: 15  ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74

Query: 431 QTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
             IG +P+   +F + T+  N+L G       +  A +E  ++     +L      + G 
Sbjct: 75  AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE--RVYELFPRLKERRKQLAGT 132

Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI- 548
               LSGGE+Q ++IARA++  P +++ DE +  L       I  A+  L     T+++ 
Sbjct: 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLV 188

Query: 549 ---AHRLSTITDADNIIVFDQGTVVESGSHENL 578
              A     I  AD   V ++G VV  G+   L
Sbjct: 189 EQNARFALEI--ADRAYVLERGRVVLEGTAAEL 219


>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
           of a variety of lipid compounds.  Mutations of members
           of ABCA subfamily are associated with human genetic
           diseases, such as, familial high-density lipoprotein
           (HDL) deficiency, neonatal surfactant deficiency,
           degenerative retinopathies, and congenital
           keratinization disorders.  The ABCA1 protein is involved
           in disorders of cholesterol transport and high-density
           lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR)
           protein transports vitamin A derivatives in the outer
           segments of photoreceptor cells, and therefore, performs
           a crucial step in the visual cycle.  The ABCA genes are
           not present in yeast.  However, evolutionary studies of
           ABCA genes indicate that they arose as transporters that
           subsequently duplicated and that certain sets of ABCA
           genes were lost in different eukaryotic lineages..
          Length = 220

 Score =  102 bits (256), Expect = 3e-22
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 20/209 (9%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
             +S  +   +   L+G +G GK+T  K+L        G   I+G  I+   +++ RQ++
Sbjct: 19  DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSL 77

Query: 434 GIIPQDTILFN-----DTLR-YNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTV 486
           G  PQ   LF+     + LR Y  L G P +  +E    +  V  L     K        
Sbjct: 78  GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR----- 132

Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTL 546
                  LSGG K+++S+A A++  P +++ DE TS LD  + R I   +  + K R+ +
Sbjct: 133 ------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSII 186

Query: 547 VIAHRLSTITD-ADNIIVFDQGTVVESGS 574
           +  H +       D I +   G +   GS
Sbjct: 187 LTTHSMDEAEALCDRIAIMSDGKLRCIGS 215


>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
           transporter and the ATPase component of a molybdate
           transport system that also includes the periplasmic
           binding protein ModA and the membrane protein ModB. ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides and more complex organic
           molecules. The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 214

 Score =  101 bits (253), Expect = 6e-22
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%)

Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI----KKITKESLRQ 431
           I F++   + T + G SG GKST+ + +  L    GG I ++G  +    KKI     ++
Sbjct: 17  IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75

Query: 432 TIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490
            IG++ Q   LF +  +R N+ +G     ++E   +V+   L         G D ++   
Sbjct: 76  KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD-ELLDLL------GLDHLLNRY 128

Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVI 548
             +LSGGEKQRV++ARA+   P +++ DE  S+LD      +   L  + K  N   + +
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188

Query: 549 AHRLSTI-TDADNIIVFDQGTVVESG 573
            H LS     AD I+V + G +   G
Sbjct: 189 THDLSEAEYLADRIVVMEDGRLQYIG 214


>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 352

 Score =  100 bits (251), Expect = 9e-22
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 19/213 (8%)

Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI----KKITKESLRQ 431
            +F +     TAL G SG GK+++  ++  L     G I ++G+ +    K I     ++
Sbjct: 17  ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76

Query: 432 TIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGER 490
            IG + QD  LF + T+R N+ YG   +   +    V +  ++  + + P          
Sbjct: 77  RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG--------- 127

Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVI 548
              LSGGEKQRV+I RA+L  P +++ DE  +SLD+  +R I   L  L    N   L +
Sbjct: 128 --TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185

Query: 549 AHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
           +H L  +   AD ++V + G V  SG  E +  
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218


>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
           ATPase components [General function prediction only].
          Length = 501

 Score =  100 bits (251), Expect = 1e-21
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 16/208 (7%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQT 432
             +S  +   +  AL+GE+G GKST+ K+L+ LY    G I +DG++++ K  ++++R  
Sbjct: 21  DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80

Query: 433 IGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK--LPNGYDTVVGE 489
           IG++ Q  +L    T+  NI+ G   +    +      A++K    +  LP   D  V +
Sbjct: 81  IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD 140

Query: 490 RGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK----NRTT 545
               LS GE+QRV I +A+ +   ++I DE T+ L   T +        L +     +T 
Sbjct: 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVL---TPQEADELFEILRRLAAEGKTI 193

Query: 546 LVIAHRLSTITD-ADNIIVFDQGTVVES 572
           + I H+L  +   AD + V  +G VV +
Sbjct: 194 IFITHKLKEVMAIADRVTVLRRGKVVGT 221



 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 11/208 (5%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT--KESLRQ 431
           K +SFE+   +   + G +G G+S + + +  L     G I ++G+D+      +E  R 
Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334

Query: 432 TIGIIPQDTI----LFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
            +  +P+D      + + +L  N++ G  +         ++   ++ F  +L   +D   
Sbjct: 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394

Query: 488 GERGLK---LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT 544
                    LSGG +Q++ +AR + + P ++I  + T  LD+     I   L  L     
Sbjct: 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGK 454

Query: 545 T-LVIAHRLSTITD-ADNIIVFDQGTVV 570
             L+I+  L  I + +D I V  +G +V
Sbjct: 455 AVLLISEDLDEILELSDRIAVIYEGRIV 482


>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
           ModC is an ABC-type transporter and the ATPase component
           of a molybdate transport system that also includes the
           periplasmic binding protein ModA and the membrane
           protein ModB.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score = 99.5 bits (248), Expect = 2e-21
 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 11/212 (5%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
           K +S E+       ++G +G GKS + + +        G I ++G+DI  +  E  ++ I
Sbjct: 16  KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDI 73

Query: 434 GIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492
             +PQ+  LF + T+  NI YG       +     +V ++   +     G D ++  +  
Sbjct: 74  SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKPE 128

Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI--AH 550
            LSGGE+QRV+IARA++ NP I++ DE  S+LD+ T+  ++  L  + K     V+   H
Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188

Query: 551 RLSTI-TDADNIIVFDQGTVVESGSHENLISQ 581
                   AD + +   G +++ G  E +  +
Sbjct: 189 DFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220


>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 237

 Score = 99.0 bits (247), Expect = 3e-21
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
           N+S  Y       +G+S E+   +  AL+G +G GK+T+ K +  L   + G I  DG+D
Sbjct: 8   NLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGED 66

Query: 421 IKKI-TKESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
           I  +   E  R  I  +P+   +F   T+  N+L G     D+E          + F   
Sbjct: 67  ITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF--- 123

Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
            P   +    +R   LSGGE+Q ++IARA++  P +++ DE +  L       I  A+  
Sbjct: 124 -PRLKE-RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181

Query: 539 LSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
           L K    T L++        + AD   V + G +V SG+   L++
Sbjct: 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226


>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score = 98.4 bits (245), Expect = 5e-21
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 14/220 (6%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
           +  G+S ++ P +  A++G +G GKST+ K L        G +T++G  +     E L +
Sbjct: 16  LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75

Query: 432 TIGIIPQDTIL-FNDTLRYNILYGN-PNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
              ++PQ++ L F  T++  +  G  P+ S +E     E  ++ +  +        + G 
Sbjct: 76  HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE---PEEDERIAAQALAA-TDLSGLAGR 131

Query: 490 RGLKLSGGEKQRVSIAR------AILKNPPIIIFDEATSSLDIITERHI-QTALATLSKN 542
               LSGGE+QRV +AR        + +   +  DE TS+LDI  + H  + A     + 
Sbjct: 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG 191

Query: 543 RTTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
              L + H L+     AD I++  QG V+ SGS +++++ 
Sbjct: 192 GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231


>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
           system; part of the binding-protein-dependent transport
           system tbpA-thiPQ for thiamine and TPP.  Probably
           responsible for the translocation of thiamine across the
           membrane. ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 98.1 bits (244), Expect = 6e-21
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 32/230 (13%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +  + + FSY      F       A  + TA++G SG GKST+  L+      + G + I
Sbjct: 1   VRLDKIRFSYGEQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI 57

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG-NP----NASDQELCAAVEVA 470
           +G D+         + + ++ Q+  LF   T+  N+  G +P     A D++   A+EVA
Sbjct: 58  NGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ---AIEVA 112

Query: 471 Q----LKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
                L     +LP            +LSGGE+QRV++AR ++++ P+++ DE  ++LD 
Sbjct: 113 LARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161

Query: 527 ITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
                +   +  L      T L++ H+       A  ++  D G +   G
Sbjct: 162 ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211


>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
           component of the spermidine/putrescine-preferential
           uptake system consisting of PotA, -B, -C, and -D.  PotA
           has two domains with the N-terminal domain containing
           the ATPase activity and the residues required for
           homodimerization with PotA and heterdimerization with
           PotB.  ABC transporters are a large family of proteins
           involved in the transport of a wide variety of different
           compounds, like sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 232

 Score = 97.5 bits (243), Expect = 1e-20
 Identities = 62/232 (26%), Positives = 112/232 (48%), Gaps = 24/232 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   NVS  Y        G+S +I   +   L+G SG GK+T+ +L+        G I +
Sbjct: 1   IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG------NPNASDQELCAAVEV 469
           DG+DI  +     ++ +  + Q+  LF   T+  NI +G            + +  A+++
Sbjct: 60  DGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDL 117

Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
            QL+ +  + P+           +LSGG++QRV+IARA++  P +++ DE   +LD+   
Sbjct: 118 VQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166

Query: 530 RHIQTALATLSKNR--TTLVIAHRLS-TITDADNIIVFDQGTVVESGSHENL 578
           + +Q  L  L K    T + + H     +T +D I V ++G + + G+ E +
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218


>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1.  The sulfonylurea receptor
           SUR is an ATP transporter of the ABCC/MRP family with
           tandem ATPase binding domains.  Unlike other ABC
           proteins, it has no intrinsic transport function,
           neither active nor passive, but associates with the
           potassium channel proteins Kir6.1 or Kir6.2 to form the
           ATP-sensitive potassium (K(ATP)) channel.  Within the
           channel complex, SUR serves as a regulatory subunit that
           fine-tunes the gating of Kir6.x in response to
           alterations in cellular metabolism.  It constitutes a
           major pharmaceutical target as it binds numerous drugs,
           K(ATP) channel openers and blockers, capable of up- or
           down-regulating channel activity..
          Length = 218

 Score = 95.9 bits (238), Expect = 3e-20
 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 8/219 (3%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVA-KLLYRLYDIKGGII- 414
           +   N  FS+         I+  I   + T ++G+ G GKS++   +L  +  ++G +  
Sbjct: 1   VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60

Query: 415 --TIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
               + +   + T+   R ++    Q   L N T+  NI +G+P  + Q   A  +   L
Sbjct: 61  SNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSL 119

Query: 473 KSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
           +  I  LP G  T +GERG+ LSGG++QR+ +ARA+ +N  I+  D+  S+LDI    H+
Sbjct: 120 QPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179

Query: 533 QTA--LATLSKNRTTLV-IAHRLSTITDADNIIVFDQGT 568
                L  L  ++ TLV + H+L  +  AD II    G+
Sbjct: 180 MQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218


>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 345

 Score = 95.8 bits (238), Expect = 3e-20
 Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 18/212 (8%)

Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ- 431
              IS +I   +  AL+G SG GKST+ +++  L     G I ++G+ +  ++  ++R  
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77

Query: 432 TIGIIPQDTILF-NDTLRYNILYG----NPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486
            +G + Q   LF + T+  NI +G        S+ E+ A VE   L+  +++L       
Sbjct: 78  KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE-ELLR--LVQLEG----- 129

Query: 487 VGER-GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR-- 543
           + +R   +LSGG++QRV++ARA+   P +++ DE   +LD    + ++  L  L      
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189

Query: 544 TTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
           TT+ + H      + AD ++V +QG + + G 
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221


>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits, or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 282

 Score = 95.1 bits (236), Expect = 5e-20
 Identities = 67/262 (25%), Positives = 125/262 (47%), Gaps = 24/262 (9%)

Query: 329 EELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY--NHHNCIFKGISFEIAPSKKT 386
           +E    L EK + +N     D K  +     NN+ FS        + K I+ +I   +  
Sbjct: 14  DEGFGELLEKAKQEN----NDRKHSSDD---NNLFFSNLCLVGAPVLKNINLKIEKGEML 66

Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDT 446
           A+ G +G GK+++  L+    +   G I   G+             I    Q + +   T
Sbjct: 67  AITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-------------ISFSSQFSWIMPGT 113

Query: 447 LRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIAR 506
           ++ NI++G  +  +    + V+  QL+  I K P   +TV+GE G+ LSGG++ R+S+AR
Sbjct: 114 IKENIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLAR 172

Query: 507 AILKNPPIIIFDEATSSLDIITERHI-QTALATLSKNRTTLVIAHRLSTITDADNIIVFD 565
           A+ K+  + + D     LD+ TE+ I ++ +  L  N+T +++  ++  +  AD I++  
Sbjct: 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232

Query: 566 QGTVVESGSHENLISQGGIYTS 587
           +G+    G+   L S    ++S
Sbjct: 233 EGSSYFYGTFSELQSLRPDFSS 254


>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
           lysophospholipase L1 biosynthesis, ATPase component
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 228

 Score = 94.6 bits (235), Expect = 6e-20
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 24/217 (11%)

Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE 427
               I KG+   +   +  A++G SG GKST+  +L  L D   G + + GQ + K+ ++
Sbjct: 21  GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80

Query: 428 ---SLR--------QTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
              +LR        Q+  +IP  T L N  L   +     +++D    A   +  +    
Sbjct: 81  ARAALRARHVGFVFQSFHLIPNLTALENVAL--PLELRGESSADSRAGAKALLEAV---- 134

Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
                G    +     +LSGGE+QRV++ARA    P ++  DE T +LD  T   I   L
Sbjct: 135 -----GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189

Query: 537 ATLSKNR-TTLV-IAHRLSTITDADNIIVFDQGTVVE 571
             L++ R TTLV + H        D  +    G +VE
Sbjct: 190 FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226


>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a large
           family of proteins responsible for translocation of a
           variety of compounds across biological membranes. ABC
           transporters are the largest family of proteins in many
           completely sequenced bacteria. ABC transporters are
           composed of two copies of this domain and two copies of
           a transmembrane domain pfam00664. These four domains may
           belong to a single polypeptide or belong in different
           polypeptide chains.
          Length = 119

 Score = 94.7 bits (236), Expect = 7e-20
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 13/129 (10%)

Query: 397 STVAKLLYRLYDIKGGIITIDGQDIKKI-TKESLRQTIGIIPQDTILF-NDTLRYNILYG 454
           ST+ KL+  L     G I +DG+D   + ++++LR+ IG++ QD  LF   T+R N+ +G
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 455 -NPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPP 513
                +D     A+E   L  F+ + P G           LSGG+KQRV+IARA+LK P 
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDRSPVG----------TLSGGQKQRVAIARALLKKPK 110

Query: 514 IIIFDEATS 522
           +++ DE T+
Sbjct: 111 LLLLDEPTA 119


>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
           permease and ATPase components [General function
           prediction only].
          Length = 604

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 89/426 (20%), Positives = 156/426 (36%), Gaps = 43/426 (10%)

Query: 144 IRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNW-- 201
           ++S+  +I    +     +   +  +AF    +       M   VI+Y     + ++   
Sbjct: 173 LQSVISLISFTGI-----LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIG 227

Query: 202 --RVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKE---SAIS 256
              + L+ +   L  +    +     N E I  +  EK E  RL+             + 
Sbjct: 228 RPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVR 287

Query: 257 VATSLGWLNFGQGLIFSIGMVITMIISSHAVYI-GEQTVGDFV----FINTLLTQLAIPL 311
               L W   G G +     V+  I+ +   Y  G+ T G  +        + + L+  +
Sbjct: 288 AQIRLTWFQLGYGWL----SVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFI 343

Query: 312 NILGTI--YRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKI--KNGHIVFNNVSFSYN 367
           +    I  +R +     E  + L       E       +       +  I   N+S    
Sbjct: 344 DNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTP 403

Query: 368 HHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKE 427
               +   ++FE+ P ++  + GESG GK+++ + L  L+    G I++           
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-------- 455

Query: 428 SLRQTIGIIPQDTILFNDTLRYNILYGNPNA--SDQELCAAVEVAQLKSFIMKLPNGYDT 485
                +  +PQ   L   TLR  + Y N     SD EL A +    L     +L      
Sbjct: 456 ---SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE---- 508

Query: 486 VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT 545
                   LSGGE+QR++ AR +L  P  +  DEATS+LD  TE  +   L     + T 
Sbjct: 509 -EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATV 567

Query: 546 LVIAHR 551
           + + HR
Sbjct: 568 ISVGHR 573


>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
           ABC transporters involved in peptide antibiotic
           resistance.  Bacitracin is a dodecapeptide antibiotic
           produced by B. licheniformis and B. subtilis.  The
           synthesis of bacitracin is non-ribosomally catalyzed by
           a multienzyme complex BcrABC.  Bacitracin has potent
           antibiotic activity against gram-positive bacteria.  The
           inhibition of peptidoglycan biosynthesis is the best
           characterized bacterial effect of bacitracin.  The
           bacitracin resistance of B. licheniformis is mediated by
           the ABC transporter Bcr which is composed of two
           identical BcrA ATP-binding subunits and one each of the
           integral membrane proteins, BcrB and BcrC.  B. subtilis
           cells carrying bcr genes on high-copy number plasmids
           develop collateral detergent sensitivity, a similar
           phenomenon in human cells with overexpressed multi-drug
           resistance P-glycoprotein..
          Length = 208

 Score = 92.5 bits (230), Expect = 3e-19
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 17/221 (7%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +  N+++ +Y     +   IS  +   +    +G +G GK+T  K++  L     G IT 
Sbjct: 1   LKTNDLTKTYGKKRVL-DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
           DG+  +K   E+LR+ IG +          +     Y N  A +     A  +   K  I
Sbjct: 60  DGKSYQK-NIEALRR-IGAL----------IEAPGFYPNLTARENLRLLARLLGIRKKRI 107

Query: 477 MKLPN--GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
            ++ +  G      ++    S G KQR+ IA A+L NP ++I DE T+ LD    + ++ 
Sbjct: 108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167

Query: 535 ALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESG 573
            + +L     T++I+ H LS I   AD I + ++G ++E G
Sbjct: 168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208


>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
           transporter, MalK.  ATP binding cassette (ABC) proteins
           function from bacteria to human, mediating the
           translocation of substances into and out of cells or
           organelles.  ABC transporters contain two
           transmembrane-spanning domains (TMDs) or subunits and
           two nucleotide binding domains (NBDs) or subunits that
           couple transport to the hydrolysis of ATP.  In the
           maltose transport system, the periplasmic maltose
           binding protein (MBP) stimulates the ATPase activity of
           the membrane-associated transporter, which consists of
           two transmembrane subunits, MalF and MalG, and two
           copies of the ATP binding subunit, MalK, and becomes
           tightly bound to the transporter in the catalytic
           transition state, ensuring that maltose is passed to the
           transporter as ATP is hydrolyzed..
          Length = 213

 Score = 91.8 bits (228), Expect = 5e-19
 Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 24/227 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +   NV+  + +   +   ++ +IA  +   L+G SG GK+T  +++  L +   G I I
Sbjct: 1   VELENVTKRFGNVTAL-DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYG------NPNASDQELCAAVEV 469
            G+D+  +      + I ++ Q+  L+ + T+  NI +G        +  D+ +    E+
Sbjct: 60  GGRDVTDL--PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAEL 117

Query: 470 AQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITE 529
            Q++  + + P            +LSGG++QRV++ RAI++ P + + DE  S+LD    
Sbjct: 118 LQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLR 166

Query: 530 RHIQTALATLSKN--RTTLVIAH-RLSTITDADNIIVFDQGTVVESG 573
             ++  L  L +    TT+ + H ++  +T AD I V + G + + G
Sbjct: 167 VQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213


>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 263

 Score = 91.9 bits (228), Expect = 5e-19
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 12/230 (5%)

Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDI 409
           + + N    F   +           G+S EIA      +IG +G GKST+   +      
Sbjct: 2   ISLSNATKTFFKGT---PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP 58

Query: 410 KGGIITIDGQDIKKITKESLRQTIGIIPQDTIL---FNDTLRYNILYGNPNASDQELCAA 466
             G I IDG D+ K +       +  + QD +       T+  N+         + L +A
Sbjct: 59  TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA 118

Query: 467 VEVAQLKSF---IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSS 523
           +   +  SF   + +L  G +  + +R   LSGG++Q +S+  A L  P I++ DE T++
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178

Query: 524 LDIITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVV 570
           LD  T   +    A + +    TTL++ H +    D  + +I+   G +V
Sbjct: 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228


>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
           bacterial exporter complex that confers resistance to
           the antibiotics daunorubicin and doxorubicin.  In
           addition to DrrA, the complex includes an integral
           membrane protein called DrrB.  DrrA belongs to the ABC
           family of transporters and shares sequence and
           functional similarities with a protein found in cancer
           cells called  P-glycoprotein.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region in
           addition to the Walker A motif/P-loop and Walker B motif
           commonly found in a number of ATP- and GTP-binding and
           hydrolyzing proteins..
          Length = 220

 Score = 91.1 bits (226), Expect = 9e-19
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 21/231 (9%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N+   Y     + +G+SF +   +   L+G +G GK+T  K+L  L     G  T+
Sbjct: 1   IEVENLVKKYGDFEAV-RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNI-----LYGNPNASDQELCAAVEVA 470
            G D+ +  +E +R+ IGI+ QD  + ++ T   N+     LYG P A  +E      + 
Sbjct: 60  AGHDVVREPRE-VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RID 113

Query: 471 QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER 530
           +L  F + L    D +V       SGG ++R+ IAR+++  P ++  DE T  LD  T  
Sbjct: 114 ELLDF-VGLLEAADRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRA 168

Query: 531 HIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
           H+   +  L +    T L+  H +       D + + D G ++  G+ E L
Sbjct: 169 HVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219


>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 252

 Score = 91.0 bits (226), Expect = 9e-19
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 24/237 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   NVS SY     +   +S +I     T++IG +G GKST+  ++ RL     G ITI
Sbjct: 2   ITIENVSKSYGTKV-VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60

Query: 417 DGQDIKKITKESLRQTIGIIPQD-TILFNDTL-------RYNILYGNPNASDQELC-AAV 467
           DG ++     + L + + I+ Q+  I    T+       R+    G     D+ +   A+
Sbjct: 61  DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120

Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
           E   L      L + Y         +LSGG++QR  IA  + ++   ++ DE  ++LD+ 
Sbjct: 121 EYLHL----EDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169

Query: 528 TERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
               I   L  L+    +T +V+ H ++  +  +D+I+    G VV+ GS + +I  
Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226


>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
           permease components [Secondary metabolites biosynthesis,
           transport, and catabolism / Inorganic ion transport and
           metabolism].
          Length = 546

 Score = 90.8 bits (225), Expect = 1e-18
 Identities = 116/575 (20%), Positives = 217/575 (37%), Gaps = 75/575 (13%)

Query: 19  MWPANRWDLKVRIIGAMFSVIASKFVI-LGIPFLLKWVTESLIE--QSTASKTTSYLTIG 75
           +   NRW           SV+A           LL ++ ++LIE   ++      +L + 
Sbjct: 7   LLRQNRW--------PFISVMALSLASGALGIGLLAFINQALIETADTSLLVLPEFLGLL 58

Query: 76  IVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVS-HVYKLSQRFHINYKVG 134
           ++ +++S  +   +  +  H    L  E  +        +++   + ++ +         
Sbjct: 59  LLFMVSSLISQLGLTTLGQHFIYKLRSEFIK--------KILDTPLERIER-----LGSA 105

Query: 135 KLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWF 194
           +L + +++ +R+I      +   +   IL    S A+L Y    +   +  +TV+  V  
Sbjct: 106 RLLAGLTSDVRNISFAFSRLPELVQAIILTLG-SAAYLAY----LSPKMFLLTVVWIV-V 159

Query: 195 TIITSNWRVGLSKKMNNLLHECHAKVF-----------DTLINFETIQYFNSEKFEINRL 243
           TI      +    K      E   K+            +  +N E  +Y ++  +  +  
Sbjct: 160 TIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219

Query: 244 EKYISKYKESAISVATS-LGWLNFGQGLIFS-IGMVITMIISSHAVYIGEQTVGDFVFIN 301
           E     Y+   I   T  L  +N+   ++   IG+V  + +S     +G  +      I 
Sbjct: 220 E-----YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS-----LGWASTNVAATIV 269

Query: 302 TLLTQLAIPLNILGTI---YRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIV 358
            +L  L  PL     I      ++ +F +I +L  +   K +        D K     + 
Sbjct: 270 LVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL-ELAPYKADFPRPQAFPDWK----TLE 324

Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
             NV F+Y  +      I+  I   +   LIG +G GKST+A LL  LY  + G I +DG
Sbjct: 325 LRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384

Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
           + +     E  R+    +  D  LF+  L          AS Q +   ++  +L      
Sbjct: 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTSL 439

Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
               +        LKLS G+K+R+++  A+L+   I++ DE  +  D    R     L  
Sbjct: 440 NDGRFSN------LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLP 493

Query: 539 LSK--NRTTLVIAHRLSTITDADNIIVFDQGTVVE 571
           L K   +T   I+H       AD ++    G + E
Sbjct: 494 LLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528


>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
           cancer resistance protein) [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 613

 Score = 90.4 bits (224), Expect = 1e-18
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 17/239 (7%)

Query: 356 HIVFNNVSFSYNHHNC----IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD--- 408
            + F N++ S    +     I KG+S    P +  A++G SG GK+T+   L    +   
Sbjct: 25  KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL 84

Query: 409 IKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAV 467
              G I ++G+        S R+  G + QD +L    T+R  + +         L    
Sbjct: 85  KLSGEILLNGR---PRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE 141

Query: 468 EVAQLKSFI--MKLPNGYDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
           +  +++  I  + L    DT++G  G++ LSGGE++RVSIA  +L +P I+  DE TS L
Sbjct: 142 KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201

Query: 525 DIITERHIQTALATLS-KNRTTLVIAHRLST--ITDADNIIVFDQGTVVESGSHENLIS 580
           D  +   +   L  L+   RT +   H+ S+      D +++  +G VV SGS   L+ 
Sbjct: 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260


>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 250

 Score = 90.6 bits (225), Expect = 1e-18
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 22/220 (10%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI-----KKITKES 428
             +S E+ P +   LIG +G GK+T+  L+   Y    G +   G+DI      +I +  
Sbjct: 21  NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80

Query: 429 LRQTIGII---PQDTILFN------DTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479
           + +T  I    P  T+L N        L  + L G P A  +E  A     +L  F + L
Sbjct: 81  IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF-VGL 139

Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL 539
               D   G     LS G+++R+ IARA+   P +++ DE  + L+      +   +  L
Sbjct: 140 GELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195

Query: 540 SKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHE 576
                 T L+I H +  +   AD I+V + G V+  G+ E
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235


>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
           component/photorepair protein PhrA [Inorganic ion
           transport and metabolism].
          Length = 257

 Score = 88.8 bits (220), Expect = 4e-18
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 25/233 (10%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   NVS   N    I   +S+++ P +  A++G +G GK+T+  LL   +    G +T+
Sbjct: 32  IELKNVSVRRNGKK-ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90

Query: 417 DGQDIKKI-TKESLRQTIGIIP---QDTILFNDTLRYNILYG--------NPNASDQELC 464
            G+   K  T   LR+ IG++     +     +T+R  +L G          + + ++L 
Sbjct: 91  LGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLA 150

Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
           AA  +  L+    K       +       LS GE++RV IARA++K+P ++I DE    L
Sbjct: 151 AAQWL--LELLGAK------HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202

Query: 525 DIIT-ERHIQT--ALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESG 573
           D+I  E+ +     LA        L + H    I     + ++  +G VV  G
Sbjct: 203 DLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255


>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 223

 Score = 88.9 bits (220), Expect = 4e-18
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 8/181 (4%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
           I   IS  +   +  A+ G SG GKST+ K++  L     G +  +G+D+  +  E+ RQ
Sbjct: 18  ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77

Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
            +    Q   LF DT+  N+++      ++    A  +  L  F   LP   D+++ +  
Sbjct: 78  QVSYCAQTPALFGDTVEDNLIFPW-QIRNRRPDRAAALDLLARF--ALP---DSILTKNI 131

Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL--SKNRTTLVIA 549
            +LSGGEKQR+++ R +   P I++ DE TS+LD   +R+I+  +      +N   L I 
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWIT 191

Query: 550 H 550
           H
Sbjct: 192 H 192


>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
           subfamily is involved in the transport of the
           hydrophobic amino acids leucine, isoleucine and valine. 
           MJ1267 is a branched-chain amino acid transporter with
           29% similarity to both the LivF and LivG components of
           the E. coli  branched-chain amino acid transporter.
           MJ1267 contains an insertion from residues 114 to 123
           characteristic of LivG (Leucine-Isoleucine-Valine)
           homologs.  The branched-chain amino acid transporter
           from E. coli comprises a heterodimer of ABCs (LivF and
           LivG), a heterodimer of six-helix TM domains (LivM and
           LivH), and one of two alternative soluble periplasmic
           substrate binding proteins (LivK or LivJ)..
          Length = 236

 Score = 87.4 bits (217), Expect = 9e-18
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 19/215 (8%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
             +SF + P +   LIG +G GK+T+  L+        G +  DG+DI  +        +
Sbjct: 17  DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL-PPHEIARL 75

Query: 434 GIIP--QDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSF---------IMKLPN 481
           GI    Q   LF + T+  N++      +   L  A    + +            + L +
Sbjct: 76  GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135

Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS- 540
             D   GE    LS G+++R+ IARA+  +P +++ DE  + L+      +   +  L  
Sbjct: 136 LADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191

Query: 541 KNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
           +  T L++ H +  +   AD + V DQG V+  G+
Sbjct: 192 RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226


>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 325

 Score = 86.9 bits (215), Expect = 2e-17
 Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 21/226 (9%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
           + ISFEI   +    +G +G GKST  K+L  L     G + ++G+D  +  +E LR   
Sbjct: 41  QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100

Query: 434 GIIPQDTILF-----NDTLRYN-ILYGNPNASDQE-LCAAVEVAQLKSFIMKLPNGYDTV 486
            ++ Q   L+      D+L    ++Y  P+    E L    E+  L+ F+          
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-------- 152

Query: 487 VGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR--T 544
                 KLS G++ R  +A A+L  P ++  DE T  LD+  + +I+  L   ++ R  T
Sbjct: 153 ---PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT 209

Query: 545 TLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIYTSMW 589
            L+  H    I    D +++ DQG +V  G+   L  Q G Y    
Sbjct: 210 VLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255


>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
           complex cysAWTP involved in sulfate import.  Responsible
           for energy coupling to the transport system.  The
           complex is composed of two ATP-binding proteins (cysA),
           two transmembrane proteins (cysT and cysW), and a
           solute-binding protein (cysP).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 239

 Score = 86.1 bits (213), Expect = 2e-17
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 28/236 (11%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   NVS  +     +   +S +I   +  AL+G SG GK+T+ +L+  L     G I  
Sbjct: 3   IEVRNVSKRFGDFVAL-DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYG--------NPNAS--DQELCA 465
            G+D   +  +   + +G + Q   LF   T+  N+ +G         P  +    ++  
Sbjct: 62  GGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHE 119

Query: 466 AVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
            +++ QL     + P            +LSGG++QRV++ARA+   P +++ DE   +LD
Sbjct: 120 LLKLVQLDWLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168

Query: 526 IITERHIQTALATLSK--NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENL 578
               + ++  L  L    + TT+ + H      + AD ++V ++G + + G+ + +
Sbjct: 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224


>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
           transporters homologous to the Drosophila white gene,
           which acts as a dimeric importer for eye pigment
           precursors.  The eye pigmentation of Drosophila is
           developed from the synthesis and deposition in the cells
           of red pigments, which are synthesized from guanine, and
           brown pigments, which are synthesized from tryptophan.
           The pigment precursors are encoded by the white, brown,
           and scarlet genes, respectively.  Evidence from genetic
           and biochemical studies suggest that the White and Brown
           proteins function as heterodimers to import guanine,
           while the White and Scarlet proteins function to import
           tryptophan.  However, a recent study also suggests that
           White may be involved in the transport of a metabolite,
           such as 3-hydroxykynurenine, across intracellular
           membranes.  Mammalian ABC transporters belonging to the
           White subfamily (ABCG1, ABCG5, and ABCG8) have been
           shown to be involved in the regulation of
           lipid-trafficking mechanisms in macrophages,
           hepatocytes, and intestinal mucosa cells.  ABCG1 (ABC8),
           the human homolog of the Drosophila white gene is
           induced in monocyte-derived macrophages during
           cholesterol influx mediated by acetylated low-density
           lipoprotein.  It is possible that human ABCG1 forms
           heterodimers with several heterologous partners..
          Length = 226

 Score = 86.0 bits (213), Expect = 2e-17
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 13/210 (6%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD---IKGGIITIDGQDIKKITKES 428
           I   +S  +   +  A++G SG GK+T+   +    +      G I  +GQ  K    + 
Sbjct: 22  ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQ 78

Query: 429 LRQTIGIIPQ-DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
            ++ +  + Q D +L   T+R  + Y       ++   A+   +++  +++      T +
Sbjct: 79  FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA--LTRI 136

Query: 488 GERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK-NRTT 545
           G   +K +SGGE++RVSIA  +L +P ++I DE TS LD  T  ++ + L+ L++ NR  
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196

Query: 546 LVIAH--RLSTITDADNIIVFDQGTVVESG 573
           ++  H  R       D I++   G +V SG
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226


>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
           proteins, ABC superfamily [Lipid transport and
           metabolism, General function prediction only].
          Length = 885

 Score = 85.9 bits (212), Expect = 3e-17
 Identities = 88/454 (19%), Positives = 166/454 (36%), Gaps = 39/454 (8%)

Query: 155 VVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLH 214
            V ++  +L +  S   L Y    I+      +VIL ++  I        L      +L 
Sbjct: 375 TVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISG-----LLVFFAVFILQ 429

Query: 215 ECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLG----WLNFGQGL 270
                      N  T   F+        L   + +    A     +L         G   
Sbjct: 430 SFA--------NGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDE 481

Query: 271 IFSIGMVIT--MIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEI 328
            F   ++     +I    + +  + V D +F           L  +    R    +   +
Sbjct: 482 SFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFL---------LIFVPFKRRMRALTQNML 532

Query: 329 EELLNILNEKIEIQNAVN---SKDLKIKNGH-IVFNNVSFSYNHHNCIFKGISFEIAPSK 384
           +    +  EK+++    N   +   +      +V NN+S  Y   +   +G+SF + P +
Sbjct: 533 KGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGE 592

Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI-KKITKESLRQTIGIIPQDTILF 443
              L+G +G GK+T  K+L        G   I G DI      + +R+ +G  PQ   L+
Sbjct: 593 CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALW 652

Query: 444 NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVS 503
            +      L     A  + L  +   + ++  +  +  G      ++    SGG K+R+S
Sbjct: 653 EELTGREHLE--FYARLRGLPRSDIGSAIEKLLRLVGLGPYAN--KQVRTYSGGNKRRLS 708

Query: 504 IARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDA--DNI 561
            A A++ +P +I+ DE ++ LD    RH+   +A L KN   +++        +A     
Sbjct: 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRT 768

Query: 562 IVFDQGTVVESGSHENLISQGGIYTSMWKKQCES 595
            +   G +   GS + L S+ G   ++  +  E 
Sbjct: 769 AIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKEL 802


>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
           assembly, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 251

 Score = 85.6 bits (212), Expect = 4e-17
 Identities = 67/243 (27%), Positives = 103/243 (42%), Gaps = 32/243 (13%)

Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLY 407
           L+IK+ H+              I KG++  +   +  A++G +G GKST+A  +  +  Y
Sbjct: 4   LEIKDLHV-------EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56

Query: 408 DIKGGIITIDGQDIKKITKESLRQTIGI---------IPQDTILFNDTLRYNILYGNPNA 458
           ++  G I  DG+DI +++ +  R   GI         IP  T         N   G    
Sbjct: 57  EVTEGEILFDGEDILELSPDE-RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115

Query: 459 SDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL--KLSGGEKQRVSIARAILKNPPIII 516
             +       + +LK     L  G D    ER +    SGGEK+R  I + +L  P + I
Sbjct: 116 LPEF------IKELKEKAELL--GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI 167

Query: 517 FDEATSSLDIITERHIQTALATL-SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESG 573
            DE  S LDI   + +   +  L  + R  L+I H  RL      D + V   G +V+SG
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227

Query: 574 SHE 576
             E
Sbjct: 228 DPE 230


>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score = 84.6 bits (209), Expect = 7e-17
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 17/224 (7%)

Query: 356 HIVFNNVSFSYNH-HNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
            +  +++S SY        + +S  IA  +   ++G SG GK+T+  L+        G I
Sbjct: 3   MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62

Query: 415 TIDGQDIKKITKESLRQTIGIIPQDTILFN-DTLRYNILYGNPNASDQELCAAVEVAQLK 473
            ++G   ++I      +  G++ Q+  L     +  N+ +G      ++        Q+ 
Sbjct: 63  QLNG---RRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML 117

Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
           + +  L       + +    LSGG +QRV IARA+   P +++ DE   +LD +T   +Q
Sbjct: 118 ALV-GLEGAEHKYIWQ----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172

Query: 534 TALATLSK--NRTTLVIAHRL-STITDADNIIVFD--QGTVVES 572
             L  L +   +  L+I H +   +  A  ++V     G VVE 
Sbjct: 173 ELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216


>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
           family are similar to members of the Mj1267_LivG family,
           which is involved in the transport of branched-chain
           amino acids.  The genes yhbG and yhbN are located in a
           single operon and may function together in cell envelope
           during biogenesis.  YhbG is the putative ATP-binding
           cassette component and YhbN is the putative
           periplasmic-binding protein.  Depletion of each gene
           product leads to growth arrest, irreversible cell damage
           and loss of viability in E. coli.  The YhbG homolog
           (NtrA) is essential in Rhizobium meliloti, a symbiotic
           nitrogen-fixing bacterium..
          Length = 232

 Score = 84.4 bits (209), Expect = 7e-17
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 10/224 (4%)

Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
           N+S  Y     +  G+S  +   +   L+G +G GK+T   ++  L     G I +DGQD
Sbjct: 5   NLSKRYGKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQD 63

Query: 421 IKKIT-KESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
           I K+   +  R  IG +PQ+  +F   T+  NIL        + L       +L+  + +
Sbjct: 64  ITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV---LEIRGLSKKEREEKLEELLEE 120

Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALAT 538
                  +   +   LSGGE++RV IARA+  NP  ++ DE  + +D I  + IQ  +  
Sbjct: 121 F--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178

Query: 539 LSKNRTTLVIA-HRLS-TITDADNIIVFDQGTVVESGSHENLIS 580
           L      ++I  H +  T++  D   +  +G V+  G+ E + +
Sbjct: 179 LKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222


>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 267

 Score = 84.6 bits (209), Expect = 7e-17
 Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 8/237 (3%)

Query: 350 LKIKNGHIVFNNVS--FSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLY 407
           L+++N    F   +  F       + K +SF +   +  A+IGE+G GKST+AK+L  + 
Sbjct: 5   LEVRNLSKTFRYRTGLFRRQTVEAV-KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63

Query: 408 DIKGGIITIDGQDIKKITKESLRQTIGIIPQD-TILFNDTLRYNILYGNPNASDQELCAA 466
           +   G I I+   +         + I +I QD     N  LR   +   P   + +L   
Sbjct: 64  EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE 123

Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
               Q+    +++              L+ G+KQRV++ARA++  P III DEA +SLD+
Sbjct: 124 QRRKQIFE-TLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182

Query: 527 ITERHIQTALATLSKNR--TTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
                +   +  L + +  + + +   +  I   +D ++V  +G VVE GS  ++++
Sbjct: 183 SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239


>gnl|CDD|144311 pfam00664, ABC_membrane, ABC transporter transmembrane region.
           This family represents a unit of six transmembrane
           helices. Many members of the ABC transporter family
           (pfam00005) have two such regions.
          Length = 275

 Score = 84.3 bits (209), Expect = 9e-17
 Identities = 48/282 (17%), Positives = 112/282 (39%), Gaps = 8/282 (2%)

Query: 31  IIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKTTSYLTIGIVILITSYGTMRVVN 90
           ++  +  +I +    L  P LL    +SLI+ +   +++      ++I +       V+ 
Sbjct: 1   LLIGILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVG------VLQ 54

Query: 91  LISNHIRDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMI 150
            +      +L   +GQ     L+  ++  +  L   F     VG+L+S ++N +  I   
Sbjct: 55  GLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDG 114

Query: 151 IRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMN 210
           +   +     ++      +  ++Y YG     ++   + L +  + + +     L++K  
Sbjct: 115 LGDKLGLFFQSLATVVGGLIVMFY-YGWKLTLVLLAILPLLILLSAVLAKILRKLNRKEQ 173

Query: 211 NLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNFGQGL 270
               +  +   ++L    T++ F  E++E+ R +K +   +++ I  A   G        
Sbjct: 174 KAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAIIAGLSFGITQF 233

Query: 271 IFSIGMVITM-IISSHAVYIGEQTVGDFVFINTLLTQLAIPL 311
           I  +   + +      +V  G  +VG      +L  QL+ PL
Sbjct: 234 ISYLSYALALWFGGYLSVISGGLSVGTVFAFLSLGLQLSGPL 275


>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
           [Amino acid transport and metabolism].
          Length = 242

 Score = 83.9 bits (207), Expect = 1e-16
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 28/235 (11%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I  N ++  Y  H  +F  I+ +    +   L+G SG GKS++ ++L  L   + G + I
Sbjct: 3   IQLNGINCFYGAHQALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61

Query: 417 DGQ--DIKKITKE----SLRQTIGIIPQDTILF-NDTLRYNILYGNPN----ASDQELCA 465
            G   D  K   +     LR+ +G++ Q   L+ + T++ N++         + DQ L  
Sbjct: 62  AGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALAR 121

Query: 466 AVEVA---QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
           A ++    +LK +  + P           L LSGG++QRV+IARA++  P +++FDE T+
Sbjct: 122 AEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170

Query: 523 SLDIITERHIQTALATLSK-NRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSH 575
           +LD      I + +  L++   T +++ H +      A  ++  + G +VE G  
Sbjct: 171 ALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225


>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
           ATPase domains [General function prediction only].
          Length = 530

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 26/232 (11%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           + F NVS  Y+    + K +SF I    + A++G +G GKST+ KLL        G + +
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381

Query: 417 DGQDIKKITKESLRQTIGIIPQD--TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKS 474
            G+ +K          IG   Q    +  + T+   +  G P+  +QE+      A L  
Sbjct: 382 -GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV-----RAYLGR 425

Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
           F             +    LSGGEK R+ +A+ +L+ P +++ DE T+ LDI +   ++ 
Sbjct: 426 FGFT-----GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480

Query: 535 ALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQGGIY 585
           AL       T L+++H    +   A  I + +       G +E+ + Q    
Sbjct: 481 ALLDFEG--TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530



 Score = 82.2 bits (203), Expect = 3e-16
 Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 50/264 (18%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N+S +Y     + + +S  + P ++  L+G +G GKST+ K+L    +   G +T 
Sbjct: 4   ITLENLSLAYGDRP-LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSF 475
                           +G + Q+  L    T+   ++ G     +         A L   
Sbjct: 63  PKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADP 111

Query: 476 IMKLPNGYDTVVGE--------------RGLK----------LSGGEKQRVSIARAILKN 511
             +L    + ++ E               GL           LSGG ++RV++ARA+L+ 
Sbjct: 112 DDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEE 171

Query: 512 PPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVF-DQGTVV 570
           P +++ DE T+ LD+ +   ++  L       T +V++H    + +    I+  D+G   
Sbjct: 172 PDLLLLDEPTNHLDLESIEWLEDYLK--RYPGTVIVVSHDRYFLDNVATHILELDRG--- 226

Query: 571 ESGSHENLISQGGIYTSMWKKQCE 594
                  L    G Y+S + +Q  
Sbjct: 227 ------KLTPYKGNYSS-YLEQKA 243


>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
           the carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           Pentoses include xylose, arabinose, and ribose.
           Important hexoses include glucose, galactose, and
           fructose.  In members of the Carb_monos family, the
           single hydrophobic gene product forms a homodimer while
           the ABC protein represents a fusion of two
           nucleotide-binding domains.  However, it is assumed that
           two copies of the ABC domains are present in the
           assembled transporter..
          Length = 163

 Score = 81.6 bits (202), Expect = 5e-16
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 64/203 (31%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKIT-KESLRQT 432
            G+S  +   +  AL+GE+G GKST+ K+L  LY    G I +DG+++   + +++ R  
Sbjct: 17  DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG 76

Query: 433 IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492
           I ++ Q                                        L       VGER  
Sbjct: 77  IAMVYQ----------------------------------------LS------VGER-- 88

Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL----SKNRTTLVI 548
                  Q V IARA+ +N  ++I DE T++L   T   ++     +    ++    + I
Sbjct: 89  -------QMVEIARALARNARLLILDEPTAAL---TPAEVERLFKVIRRLRAQGVAVIFI 138

Query: 549 AHRLSTITD-ADNIIVFDQGTVV 570
           +HRL  + + AD + V   G VV
Sbjct: 139 SHRLDEVFEIADRVTVLRDGRVV 161


>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
           component [General function prediction only].
          Length = 243

 Score = 80.2 bits (198), Expect = 2e-15
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 16/236 (6%)

Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
               +V  N++ SY     +   +S E+   +   L+G +G GK+T   ++  L     G
Sbjct: 1   DMSTLVAENLAKSYKK-RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59

Query: 413 IITIDGQDIKKIT-KESLRQTIGIIPQDTILFND-TLRYNIL----YGNPNASDQELCAA 466
            I +D +DI K+   +  R  IG +PQ+  +F   T+  NI+        +    E    
Sbjct: 60  KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119

Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
           ++ A L+ F          +   +   LSGGE++RV IARA+  NP  I+ DE  + +D 
Sbjct: 120 LD-ALLEEF------HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172

Query: 527 ITERHIQTALATL-SKNRTTLVIAHRL-STITDADNIIVFDQGTVVESGSHENLIS 580
           I    IQ  +  L  +    L+  H +  T+   D   +   G V+  GS E +++
Sbjct: 173 IAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228


>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
           Fe-S cluster assembly, ATPase component.  Biosynthesis
           of iron-sulfur clusters (Fe-S) depends on multiprotein
           systems.  The SUF system of E. coli and Erwinia
           chrysanthemi is important for Fe-S biogenesis under
           stressful conditions.  The SUF system is made of six
           proteins: SufC is an atypical cytoplasmic ABC-ATPase,
           which forms a complex with SufB and SufD; SufA plays the
           role of a scaffold protein for assembly of iron-sulfur
           clusters and delivery to target proteins; SufS is a
           cysteine desulfurase which mobilizes the sulfur atom
           from cysteine and provides it to the cluster; SufE has
           no associated function yet..
          Length = 200

 Score = 79.7 bits (197), Expect = 2e-15
 Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 49/233 (21%)

Query: 350 LKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLY 407
           L+IK+ H+              I KG++  I   +  AL+G +G GKST+AK +  +  Y
Sbjct: 1   LEIKDLHVSVGGKE--------ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY 52

Query: 408 DIKGGIITIDGQDIKKI-TKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAA 466
           ++  G I   G+DI  +  +E  R  I +  Q                 P          
Sbjct: 53  EVTEGEILFKGEDITDLPPEERARLGIFLAFQ----------------YP--------PE 88

Query: 467 VEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
           +   +   F+  +  G            SGGEK+R  I + +L  P + I DE  S LDI
Sbjct: 89  IPGVKNADFLRYVNEG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137

Query: 527 ITERHIQTALATL-SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESGSHE 576
              R +   +  L  + ++ L+I H  RL      D + V   G +V+SG  E
Sbjct: 138 DALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190


>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
           superfamily (involved in peroxisome organization and
           biogenesis) [Lipid transport and metabolism, General
           function prediction only].
          Length = 659

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 110/595 (18%), Positives = 213/595 (35%), Gaps = 78/595 (13%)

Query: 9   LRTLKKLWPYMWPANRWDLKVRIIGAMFS-VIASKFVILGIPFLLKWVTESLIEQSTASK 67
            +   ++   ++P+        ++ A+ +  + +   +  I  +      +    +  +K
Sbjct: 62  FQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNI-----PTKFYVALINK 116

Query: 68  TTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSH--VYKLS- 124
                   +   +     + ++N +     + LY+   +  T  L+         YKLS 
Sbjct: 117 DAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSN 176

Query: 125 QRFHINYKVGKLSSAISNGIRSI-EMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSI 183
               I+    +L+  +    R +  +   ++          F +  +  W     I+   
Sbjct: 177 LDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYF 236

Query: 184 MAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRL 243
           +  TVI       I     V   +K+       H+++    +N E I ++   + E  R 
Sbjct: 237 LIGTVINKTLRGPIV-KLTV-EQEKLEGDFRYKHSRL---RVNAEEIAFYRGGQVEHQRT 291

Query: 244 EKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMII-------------SSHAVYIG 290
           ++      +    + +   WL F   +   +G +++ ++              S A   G
Sbjct: 292 DQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSG 351

Query: 291 EQTVGDFVFIN-----TLLTQLAIPLNIL-GTIYR------------DSRQSFIEIEELL 332
             +   FVFI        L  L+  L+ L G  +R               Q     EE L
Sbjct: 352 LISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEEL 411

Query: 333 NILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSY-NHHNCIFKGISFEIAPSKKTALI-G 390
                 + +     S   +  +  I F  VS S   + + + + +S E+ PS +  LI G
Sbjct: 412 GEAEWGLSLPP--GSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEV-PSGQNLLITG 468

Query: 391 ESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYN 450
            SG GK+++ ++L  L+   GG +T          K+        +PQ   +   TLR  
Sbjct: 469 PSGCGKTSLLRVLGGLWPSTGGKLTKPT---DGGPKDLF-----FLPQRPYMTLGTLRDQ 520

Query: 451 ILYGNPN-------ASDQELCAAVEVAQLKSFIMKLPNGYDT-VVGERGLKLSGGEKQRV 502
           ++Y           ASD+++   +E  QL   +++   G D  V  +    LS GE+QR+
Sbjct: 521 VIYPLKAEDMDSKSASDEDILRILENVQL-GHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579

Query: 503 SIARAILKNPPIIIFDEATSSLDIITE----RHIQTALATLSKNRTTLVIAHRLS 553
           + AR     P   I DE TS++    E    R  +          T + + HR S
Sbjct: 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR------EMGITFISVGHRKS 628


>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
           resistance, nodulation, lipid transport, and bacteriocin
           and lantibiotic immunity.  In eubacteria and archaea,
           the typical organization consists of one ABC and one or
           two IMs.  Eukaryote systems of the ABCA subfamily
           display ABC domains strongly similar to this family.
           ABC transporters are a large family of proteins involved
           in the transport of a wide variety of different
           compounds, like sugars, ions, peptides and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region in addition to the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 210

 Score = 79.1 bits (195), Expect = 3e-15
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 31/227 (13%)

Query: 359 FNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG 418
             NV+  +     +   ISF +   +   L+G +G GK+T  +++  +     G +  DG
Sbjct: 3   VENVTKRFGRVTAL-DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61

Query: 419 QDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYGNPN----ASDQELCAAVE 468
           + +      + R  IG +P++  L+      D L Y   L G           E    +E
Sbjct: 62  KPLD----IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE 117

Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
           +++  +              +R  +LS G +Q+V    A++ +P ++I DE  S LD + 
Sbjct: 118 LSEYAN--------------KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163

Query: 529 ERHIQTALATLSKNRTTLVI-AHRLSTITD-ADNIIVFDQGTVVESG 573
              ++  +  L++   T+++  H++  + +  D +++ ++G  V  G
Sbjct: 164 VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210


>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 256

 Score = 77.3 bits (190), Expect = 1e-14
 Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 21/238 (8%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +   ++   Y  H  + KG+S +       ++IG SG GKST  + +  L     G I +
Sbjct: 7   LEVEDLHKRYGEHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65

Query: 417 DGQDIKKITK-------------ESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQE 462
           +G++I+                 + LR  +G++ Q   L++  T+  N++    +     
Sbjct: 66  NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125

Query: 463 LCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS 522
              A+E A+   ++ K+  G           LSGG++QRV+IARA+   P +++FDE TS
Sbjct: 126 KAEAIERAE--KYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTS 181

Query: 523 SLDIITERHIQTALATLSKN-RTTLVIAHRLSTITDADNIIVF-DQGTVVESGSHENL 578
           +LD      +   +  L++  RT +V+ H +    D  + ++F  QG + E G  E +
Sbjct: 182 ALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239


>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
           transporter (Pat) is involved in the import of very
           long-chain fatty acids (VLCFA) into the peroxisome.  The
           peroxisomal membrane forms a permeability barrier for a
           wide variety of metabolites required for and formed
           during fatty acid beta-oxidation.  To communicate with
           the cytoplasm and mitochondria, peroxisomes need
           dedicated proteins to transport such hydrophilic
           molecules across their membranes.  X-linked
           adrenoleukodystrophy (X-ALD) is caused by mutations in
           the ALD gene, which encodes ALDP (adrenoleukodystrophy
           protein ), a peroxisomal integral membrane protein that
           is a member of the ATP-binding cassette (ABC)
           transporter protein family.  The disease is
           characterized by a striking and unpredictable variation
           in phenotypic expression.  Phenotypes include the
           rapidly progressive childhood cerebral form (CCALD), the
           milder adult form, adrenomyeloneuropathy (AMN), and
           variants without neurologic involvement (i.e.
           asymptomatic)..
          Length = 166

 Score = 76.0 bits (187), Expect = 3e-14
 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 50/210 (23%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I   N+S +      + K +SFEI P  +  + G SG GKS++ + L  L+    G I +
Sbjct: 1   IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
              +            +  +PQ   L   TLR  ++Y                       
Sbjct: 61  PEGE-----------DLLFLPQRPYLPLGTLREQLIY----------------------- 86

Query: 477 MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
              P  +D V       LSGGE+QR++ AR +L  P  +  DEATS+LD  +E  +    
Sbjct: 87  ---P--WDDV-------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL---Y 131

Query: 537 ATLSKNRTTLV-IAHRLSTITDADNIIVFD 565
             L +   T++ + HR S     D ++  D
Sbjct: 132 QLLKELGITVISVGHRPSLWKFHDRVLDLD 161


>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 300

 Score = 73.4 bits (180), Expect = 2e-13
 Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 29/238 (12%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           +    V+ S+     +   ISFE+ P +   L+G +G GK+T  +++  L +   G IT 
Sbjct: 3   LEIEGVTKSFGDKKAVD-NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW 61

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFN-----DTLRY-NILYGNPNASDQELCAAVEVA 470
           +G  + +  K      IG +P++  L+      D L+Y   L G P A  Q+        
Sbjct: 62  NGGPLSQEIK----NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-------- 109

Query: 471 QLKSFIMKLPNGYDTVVGERGLK---LSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
           +L++++ +L      +VG++  K   LS G +Q++    A++  P ++I DE  S LD +
Sbjct: 110 KLQAWLERL-----EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164

Query: 528 TERHIQTALATLSKNRTTLVIA-HRLSTITD-ADNIIVFDQGTVVESGSHENLISQGG 583
               ++ A+  L +   T++ + HR+  + +  D +++  +G  V  G+ E++    G
Sbjct: 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222


>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
           system, ATPase component [Carbohydrate transport and
           metabolism / Cell envelope biogenesis, outer membrane].
          Length = 249

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 24/215 (11%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
             K ISFEI   ++  +IG +G GKST+ KL+  +Y    G + + G  +  + +     
Sbjct: 42  ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAPLIELG--- 97

Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
             G  P+ T   N  LR  IL       D+++   +E A+L  FI +    Y        
Sbjct: 98  -AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTY-------- 148

Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS----KNRTTLV 547
              S G   R++ + A    P I++ DE  +  D       +  L  L+    KN+T ++
Sbjct: 149 ---SSGMYARLAFSVATHVEPDILLLDEVLAVGD---AAFQEKCLERLNELVEKNKTIVL 202

Query: 548 IAHRLSTITDA-DNIIVFDQGTVVESGSHENLISQ 581
           ++H L  I    D  I  + G +   GS E +I  
Sbjct: 203 VSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237


>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
           [General function prediction only].
          Length = 614

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 50/232 (21%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
           I+  NVSF Y+ +  I+K ++F I    + AL+G +G GKST+ KL+             
Sbjct: 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLIT------------ 437

Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
              D++       R +   +P          RYN      + ++Q     ++ + L+  +
Sbjct: 438 --GDLQPTIGMVSRHSHNKLP----------RYNQ-----HLAEQ---LDLDKSSLEFMM 477

Query: 477 MKLPNGYD-----TVVGERGLK----------LSGGEKQRVSIARAILKNPPIIIFDEAT 521
            K P+  +     +++G  GL           LS G+++RV  AR  +K P +++ DE T
Sbjct: 478 PKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537

Query: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVES 572
           + LDI T   +  A+         ++++H    I+  A+ I V + GTV + 
Sbjct: 538 NHLDIETIDALAEAIN--EFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587



 Score = 61.9 bits (150), Expect = 5e-10
 Identities = 53/273 (19%), Positives = 98/273 (35%), Gaps = 51/273 (18%)

Query: 346 NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYR 405
            S+D+KI++       +S S+ H   + K ++ E+   ++  LIG +G GKST  + +  
Sbjct: 72  ISRDVKIES-------LSLSF-HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG 123

Query: 406 ----------LYDIKGGIITIDGQDIKKI--TKESLRQTIGIIPQDTILFND-------- 445
                      Y +   I   + Q ++ +    +  R+ +  + +D     D        
Sbjct: 124 REVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD 183

Query: 446 -TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSI 504
                     N     +       +  L     K               LSGG + R ++
Sbjct: 184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD-----------LSGGWRMRAAL 232

Query: 505 ARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIV 563
           ARA+ + P +++ DE T+ LD+     ++  LA        ++++H    +     NII 
Sbjct: 233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRIILVIVSHSQDFLNGVCTNIIH 291

Query: 564 FDQGTVVESGSHENLISQGGIYTSMWKKQCESI 596
            D            LI   G Y    K + E  
Sbjct: 292 LDNK---------KLIYYEGNYDQYVKTRSELE 315


>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
           carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           In members of Carb_Monos family the single hydrophobic
           gene product forms a homodimer, while the ABC protein
           represents a fusion of two nucleotide-binding domains.
           However, it is assumed that two copies of the ABC
           domains are present in the assembled transporter..
          Length = 182

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 44/204 (21%)

Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK-KITKESLRQ 431
            + +SFE+   +   + G  G G++ +A+ L+ L     G IT+DG+ +  +  ++++R 
Sbjct: 16  VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75

Query: 432 TIGIIPQDT----ILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
            I  +P+D     ++ + ++  NI                    L S             
Sbjct: 76  GIAYVPEDRKREGLVLDLSVAENIA-------------------LSSL------------ 104

Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS-KNRTTL 546
                 LSGG +Q+V +AR + ++P ++I DE T  +D+  +  I   +  L+   +  L
Sbjct: 105 ------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158

Query: 547 VIAHRLSTITD-ADNIIVFDQGTV 569
           +I+  L  +    D I+V  +G +
Sbjct: 159 LISSELDELLGLCDRILVMYEGRI 182


>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
           (PDR1-15), ABC superfamily [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 1391

 Score = 71.4 bits (175), Expect = 7e-13
 Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 19/277 (6%)

Query: 319 RDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISF 378
           R  R     IE   + L  + ++       ++       +   +         I K IS 
Sbjct: 77  RIDRVELPTIEVRFSALGVEADVTYGPTLVNILSNPLESILRMLGKRKKKKIQILKDISG 136

Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYD---IKGGIITIDGQDIKKITKESLRQTIGI 435
            I P + T ++G  G GK+T+ K L    D      G IT +G D+K+      ++T+  
Sbjct: 137 IIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAY 193

Query: 436 IPQDTILF-----NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK---LPNGYDTVV 487
             +  + F      +TL +      P +   E+    ++A +  +++K   L +  DT+V
Sbjct: 194 NSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLV 253

Query: 488 GERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRT 544
           G   ++ +SGGE++RVSI   ++    I+ +DE T  LD  T   I  AL  L+     T
Sbjct: 254 GNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGAT 313

Query: 545 TLVIAHRLS--TITDADNIIVFDQGTVVESGSHENLI 579
            LV   + S       D++I+  +G  +  G  + ++
Sbjct: 314 ALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350



 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 62/279 (22%), Positives = 110/279 (39%), Gaps = 37/279 (13%)

Query: 263 WLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDS- 321
           W NFG  L F++      +I+               ++  L    AI +   G   +   
Sbjct: 705 WRNFGILLGFTVFFNFVFLIALE-------------YLKPLKKSGAILVFKKGKEKKKVK 751

Query: 322 RQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHI-VFNNVSFSYNHHNC---IFKGIS 377
                   E L+  + + + +  +    L +    +  + ++ +          +   +S
Sbjct: 752 SAGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVS 811

Query: 378 FEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIIT----IDGQDIKKITKESLRQTI 433
               P   TAL+GESG GK+T+  +L       GG I     I G       +E+  +  
Sbjct: 812 GAFKPGVLTALMGESGAGKTTLLDVLAG--RKTGGYIEGDILISGF---PKDQETFARVS 866

Query: 434 GIIPQD-----TILFNDTLRYN-ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVV 487
           G + Q       +   ++LR++  L      SD+E    VE       +++L    D +V
Sbjct: 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEV---IELLELKEYADALV 923

Query: 488 GERGLKLSGGEKQRVSIARAILKNPPIIIF-DEATSSLD 525
           G  G  LS  +++R++I   ++ NP  I+F DE TS LD
Sbjct: 924 GLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962


>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
           ATPase component of a bacterial ABC-type Na+ transport
           system called NatAB, which catalyzes ATP-dependent
           electrogenic Na+ extrusion without mechanically coupled
           to proton or K+ uptake.  NatB possess six putative
           membrane spanning regions at its C-terminus.  In B.
           subtilis, NatAB is inducible by agents such as ethanol
           and protonophores, which lower the protonmotive force
           across the membrane.  The closest sequence similarity to
           NatA is exhibited by DrrA of the two-component
           daunomycin- and doxorubicin-efflux system.  Hence, the
           functional NatAB is presumably assembled with two copies
           of the single ATP-binding protein and the single
           intergral membrane protein..
          Length = 236

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 31/215 (14%)

Query: 374 KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTI 433
           KGISF I   +    IG +G GK+T  K+L  L     G + + G    K  K+ LR+ I
Sbjct: 38  KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR-I 96

Query: 434 GII------------PQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
           G++              D+      + Y++          EL   +++ +    ++  P 
Sbjct: 97  GVVFGQKTQLWWDLPVIDSFYLLAAI-YDLPPARFKKRLDELSELLDLEE----LLDTPV 151

Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK 541
                      +LS G++ R  IA A+L  P I+  DE T  LD++ + +I+  L   ++
Sbjct: 152 ----------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201

Query: 542 NRTTLVI--AHRLSTITD-ADNIIVFDQGTVVESG 573
            R T V+  +H +  I   A  ++V D+G ++  G
Sbjct: 202 ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236


>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 213

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 25/182 (13%)

Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKST----VAKLLYRLYDIK 410
           G +   NVS       C+   ++F IA  +   L+G SG GKST    +   L   +   
Sbjct: 1   GMLCLKNVSLRLPGS-CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT 59

Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFND-TLRYNILYGNP-----NASDQELC 464
           G +  ++ Q +  +     ++ IGI+ QD +LF   ++  N+L+  P     NA      
Sbjct: 60  GELW-LNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAAN 116

Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
           AA+E + L     + P             LSGG++ RV++ RA+L  P  ++ DE  S L
Sbjct: 117 AALERSGLDGAFHQDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRL 165

Query: 525 DI 526
           D+
Sbjct: 166 DV 167


>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 258

 Score = 68.4 bits (167), Expect = 6e-12
 Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 44/229 (19%)

Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI---DGQDIKKIT-KES 428
            + +SF++ P +   ++GESG GK+T+ K +        G +T    DGQ     T  E+
Sbjct: 22  CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81

Query: 429 LRQTI-----GIIPQDTILFNDTLRYNIL----------------YGNPNASDQELCAAV 467
            R+ +     G + Q+     D LR  +                 YGN  A  Q+    V
Sbjct: 82  ERRRLLRTEWGFVHQNPR---DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV 138

Query: 468 EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
           E+   +  I  LP  +           SGG +QR+ IAR ++  P ++  DE T  LD+ 
Sbjct: 139 EIDLDR--IDDLPRTF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 185

Query: 528 TERHIQTALATLSKNR--TTLVIAHRLSTIT-DADNIIVFDQGTVVESG 573
            +  +   L  L +      +++ H L+     AD ++V  QG VVESG
Sbjct: 186 VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234


>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
           transporter, ABC superfamily [Lipid transport and
           metabolism].
          Length = 728

 Score = 67.3 bits (164), Expect = 1e-11
 Identities = 109/512 (21%), Positives = 205/512 (40%), Gaps = 81/512 (15%)

Query: 115 QVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRII---VVHLIPTILEFAISMAF 171
           ++  H Y +       YKV  L S I N   S+   I      V HL   + +  + +  
Sbjct: 191 RLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLIL 250

Query: 172 LWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHE----------CHAKVF 221
           + ++  D   S+ A  + L      +T+     +S K   L+ E           H+ + 
Sbjct: 251 ISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNI- 309

Query: 222 DTLINFETIQYFNSEKFEINRLEKYISKYKESAISVATSLGWLNF-----------GQGL 270
             + N E I ++   K E+ ++++  ++  E    +     W              G GL
Sbjct: 310 --ITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGL 367

Query: 271 IF-SIGMVITMIISSHAVYIGEQTVG---DFVFINTLLTQLAIPLNILGTIYRDSRQ--- 323
           +  SI ++ + + S   + + E+      +F+    LL   A  +  L + Y++  Q   
Sbjct: 368 VMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAG 427

Query: 324 SFIEIEELLNILNE-------------------KIEIQNAVN-SKDLKIKNGH-IVFNNV 362
               +  + ++L++                     E +N+        I+N + I+  N+
Sbjct: 428 YTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENI 487

Query: 363 SFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIK 422
                  + +   ++F+I P     + G +G GKS++ ++L  L+ +  G+++I      
Sbjct: 488 PVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI------ 541

Query: 423 KITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNA---------SDQELCAAVEVAQLK 473
                     I  IPQ   +   TLR  I+Y  P++         +DQ+L A +++  L+
Sbjct: 542 -----PRPNNIFYIPQRPYMSGGTLRDQIIY--PDSSEQMKRKGYTDQDLEAILDIVHLE 594

Query: 474 SFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQ 533
             I++   G+D V   + + LSGGEKQR+ +AR     P   + DE TS++ I  E  I 
Sbjct: 595 -HILQREGGWDAVRDWKDV-LSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIF 652

Query: 534 TALATLSKNRTTLVIAHRLSTITDADNIIVFD 565
            A      +   L I HR S      +++ FD
Sbjct: 653 QAAKDAGIS--LLSITHRPSLWKYHTHLLEFD 682


>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter
           subfamily is involved in extracellular polysaccharide
           export.  Among the variety of membrane-linked or
           extracellular polysaccharides excreted by bacteria, only
           capsular polysaccharides, lipopolysaccharides, and
           teichoic acids have been shown to be exported by ABC
           transporters.  A typical system is made of a conserved
           integral membrane and an ABC.  In addition to these
           proteins, capsular polysaccharide exporter systems
           require two 'accessory' proteins to perform their
           function: a periplasmic (E.coli) or a lipid-anchored
           outer membrane protein called OMA (Neisseria
           meningitidis and Haemophilus influenzae) and a
           cytoplasmic membrane protein MPA2..
          Length = 224

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 18/204 (8%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
             K +SFE+   ++  LIG +G GKST+ +LL  +Y    G +T+ G+         L  
Sbjct: 37  ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-----SSLLGL 91

Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
             G  P+ T   N  L   +L  +    D+++   +E ++L  FI       D  V    
Sbjct: 92  GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------DLPVKT-- 142

Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA-H 550
              S G K R++ A A    P I++ DE  +  D   +   Q  L  L K   T+++  H
Sbjct: 143 --YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200

Query: 551 RLSTITD-ADNIIVFDQGTVVESG 573
             S+I    D  +V ++G +   G
Sbjct: 201 DPSSIKRLCDRALVLEKGKIRFDG 224


>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 235

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 36/197 (18%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI--DGQDIKKITKESL 429
           + + +S  +   +   L G SG GKST+ + LY  Y    G I +  +G+ +  +T E  
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 430 ------RQTIG-------IIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
                 R TIG       +IP+ + L  D +   +L            AA  + +L    
Sbjct: 86  EVLEVRRTTIGYVSQFLRVIPRVSAL--DVVAEPLLARGVPREVARAKAADLLTRLN--- 140

Query: 477 MKLPNGYDTVVGERGLKL-----SGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
                     + ER   L     SGGE+QRV+IAR  + + PI++ DE T+SLD  T R 
Sbjct: 141 ----------LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD-ATNRA 189

Query: 532 IQTALATLSKNRTTLVI 548
           +   L   +K R   ++
Sbjct: 190 VVVELIREAKARGAALV 206


>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI's are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity of more than 48%.  The high degree of
           evolutionary conservation suggests that RLI performs a
           central role in archaeal and eukaryotic physiology..
          Length = 246

 Score = 64.9 bits (158), Expect = 6e-11
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 23/190 (12%)

Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
            I+ S+   ++G +G+GK+T  K+L        G++  D  DI     E    T+   PQ
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKML-------AGVLKPDEGDI-----EIELDTVSYKPQ 68

Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498
                 +    ++L                    K+ I K P   + ++     +LSGGE
Sbjct: 69  YIKADYEGTVRDLLSSITKDF-------YTHPYFKTEIAK-PLQIEQILDREVPELSGGE 120

Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA--TLSKNRTTLVIAHRLSTIT 556
            QRV+IA  + K+  I + DE ++ LD+         +     +  +T  V+ H +  I 
Sbjct: 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180

Query: 557 D-ADNIIVFD 565
             AD +IVF+
Sbjct: 181 YLADRLIVFE 190


>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 330

 Score = 64.6 bits (157), Expect = 6e-11
 Identities = 65/240 (27%), Positives = 99/240 (41%), Gaps = 48/240 (20%)

Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLL--------------YRLYDIKGGIIT----- 415
            +S  +   +   L+GESG GKS +AK +               R  DI    ++     
Sbjct: 25  RVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84

Query: 416 -IDGQDIKKITKESL----------RQTIGIIPQDTILFNDTLRYNILYGNPNASDQELC 464
            + G ++  I +E            RQ I  IP  T       R+   +G       EL 
Sbjct: 85  KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTY----KGRWWQRFGWRKRRAIELL 140

Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
             V +   K  +   P            +L+ GE Q+V IA A+   P ++I DE T+S+
Sbjct: 141 HRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNSM 189

Query: 525 DIITERHIQTALATLSKNRTT--LVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLISQ 581
           +  T+  I   L+ L++N  T  L+I+H L  I+  AD I V   G  VES   E L++ 
Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249


>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
          Length = 252

 Score = 64.7 bits (158), Expect = 7e-11
 Identities = 71/253 (28%), Positives = 107/253 (42%), Gaps = 41/253 (16%)

Query: 346 NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLL-- 403
           N   L+IKN H   N         N I KG++  I   +  A++G +G GKST++K++  
Sbjct: 4   NKPILEIKNLHASVNE--------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55

Query: 404 YRLYDIKGGIITIDGQDIKKITKESLRQTIGI---------IPQDTILFN-DTLR--YN- 450
           +  Y I  G I   G+ I  +  E  R  +GI         IP  +   N D LR  YN 
Sbjct: 56  HPAYKILEGDILFKGESILDLEPE-ERAHLGIFLAFQYPIEIPGVS---NADFLRLAYNS 111

Query: 451 --ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK--LSGGEKQRVSIAR 506
                G P          +E  ++ +  +KL    D     R +    SGGEK+R  I +
Sbjct: 112 KRKFQGLPELD------PLEFLEIINEKLKLVG-MDPSFLSRNVNEGFSGGEKKRNEILQ 164

Query: 507 AILKNPPIIIFDEATSSLDIITERHIQTALATLS-KNRTTLVIAH--RLSTITDADNIIV 563
             L +  + I DE  S LDI   + I   +  L     + ++I H  RL      D + V
Sbjct: 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHV 224

Query: 564 FDQGTVVESGSHE 576
              G ++++G  E
Sbjct: 225 MQNGKIIKTGDAE 237


>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
           superfamily) [Translation, ribosomal structure and
           biogenesis].
          Length = 807

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 45/221 (20%)

Query: 360 NNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ 419
           ++V+F Y     +FK + F I    + A++G +GVGKST+ KLL       G +   DG+
Sbjct: 590 HDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLI------GKLDPNDGE 643

Query: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKL 479
                 +++ R  IG              ++         ++     VE  Q K     L
Sbjct: 644 -----LRKNHRLRIG-------------WFDQHANEALNGEE---TPVEYLQRK---FNL 679

Query: 480 P-NGYDTVVGERGL----------KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
           P       +G  GL           LSGG+K RV++A   L  P ++I DE T++LDI  
Sbjct: 680 PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI-- 737

Query: 529 ERHIQTALATLSKNRTTLVIAH--RLSTITDADNIIVFDQG 567
           E     A A    N   ++++H  RL   TD +  +V +QG
Sbjct: 738 ESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQG 778



 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 47/246 (19%)

Query: 346 NSKDLKIKNGHIVFNNVSFSYNHH-NCIFKGISFEIAPSKKTALIGESGVGKSTVAK-LL 403
           N+ D+KI+N         F  +     +F   S  I   ++  L+G +G+GK+T+ K + 
Sbjct: 261 NAMDIKIEN---------FDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIA 311

Query: 404 YRLYDIKGGI-ITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNIL---------- 452
            R   I   I + +  Q++   +  ++         DT+L  D  R  +L          
Sbjct: 312 ARALAIPPNIDVLLCEQEVVADSTSAI---------DTVLKADKKRLALLEEEAKLMSQI 362

Query: 453 -YGNPNASDQ---------ELCAAVEVAQLKSFIMKLPNGYDTVVGERGL-KLSGGEKQR 501
             G+  A+++          + A    A+ +  +  L  G+   + ER   K SGG + R
Sbjct: 363 EEGDTTAAERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTTKFSGGWRMR 420

Query: 502 VSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDA-DN 560
           VS+ARA+   P +++ DE T+ LD+     +   L    K  T L+++H    +     +
Sbjct: 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK--TLLIVSHDQGFLDSVCTD 478

Query: 561 IIVFDQ 566
           II  D 
Sbjct: 479 IIHLDN 484


>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
           family of ATP-binding cassette (ABC) transporters.  PDR
           is a well-described phenomenon occurring in fungi and
           shares several similarities with processes in bacteria
           and higher eukaryotes.  This PDR subfamily represents
           domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide-binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 202

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 35/209 (16%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKG---GIITIDGQDIKKITKES 428
           I K  S  + P +   ++G  G G ST+ K L    +      G I  +G   K+  +  
Sbjct: 22  ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE-- 79

Query: 429 LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
                       I++             +  D      + V +   F ++   G + V G
Sbjct: 80  -------KYPGEIIYV------------SEEDVHF-PTLTVRETLDFALRC-KGNEFVRG 118

Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTL 546
                +SGGE++RVSIA A++    ++ +D +T  LD  T   I   + T++     TT 
Sbjct: 119 -----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTF 173

Query: 547 VIAHRLS-TITDA-DNIIVFDQGTVVESG 573
           V  ++ S  I D  D ++V  +G  +  G
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQIYYG 202


>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
           [General function prediction only].
          Length = 591

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 35/195 (17%)

Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
           EI   +   ++G +G+GK+T  KLL        G+I  D    + +      Q I     
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLKVSYKPQYISPDYD 415

Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK---LPNGYDTVVGERGLKLS 495
            T+        ++L     +       A   +  K+ I+K   L +  +  V E    LS
Sbjct: 416 GTV-------EDLLRSAIRS-------AFGSSYFKTEIVKPLNLEDLLERPVDE----LS 457

Query: 496 GGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA----TLSKNRTTLVIAHR 551
           GGE QRV+IA A+ +   + + DE ++ LD+  E+ I  A        +  +T LV+ H 
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDV--EQRIIVAKVIRRFIENNEKTALVVDHD 515

Query: 552 LSTITD-ADNIIVFD 565
           +  I   +D +IVF+
Sbjct: 516 IYMIDYVSDRLIVFE 530



 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)

Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES-LRQTIGIIPQD- 439
           P K   ++G +G+GKST  K+L       G +    G+     + +  +++  G   Q+ 
Sbjct: 99  PGKVVGILGPNGIGKSTALKIL------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152

Query: 440 -TILFNDTLR--YNILYGN--PNASDQE----LCAAVEVAQLKSFIMKLPNGYDTVVGER 490
              L+   LR  +   Y +  P     +    L    E  +    + +L  G + V+   
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL--GLENVLDRD 210

Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-RTTLVIA 549
             +LSGGE QRV+IA A+L++  +  FDE +S LDI    +    +  L+++ +  +V+ 
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVE 270

Query: 550 HRLSTI 555
           H L+ +
Sbjct: 271 HDLAVL 276


>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
           the bacterial CcmAB transporter.  The CCM family is
           involved in bacterial cytochrome c biogenesis.
           Cytochrome c maturation in E. coli requires the ccm
           operon, which encodes eight membrane proteins
           (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone
           that binds heme covalently and transfers it onto
           apocytochrome c in the presence of CcmF, CcmG, and CcmH.
            The CcmAB proteins represent an ABC transporter and the
           CcmCD proteins participate in heme transfer to CcmE..
          Length = 201

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
           +F G+SF +A  +   + G +G GK+T+ ++L  L     G + ++G  +        R 
Sbjct: 15  LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74

Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
            + +     I    ++  N+ + + + SD+++  A+    L  F    P           
Sbjct: 75  LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVAQ-------- 125

Query: 492 LKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
             LS G+++RV++AR +L   P+ I DE T++LD         A+A
Sbjct: 126 --LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA 169


>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
           biogenesis, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 209

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 24/164 (14%)

Query: 370 NCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429
             +F  +SF +   +   + G +G GK+T+ ++L  L     G +   G+ I+ + +ES 
Sbjct: 15  RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESY 73

Query: 430 RQTI-------GIIPQDTILFNDTLR-YNILYGNPNASDQELCAAVEVAQLKSFIMKLPN 481
            Q +       GI  + T L N  L  +   +G+ NA+   +  A+    L      LP 
Sbjct: 74  HQALLYLGHQPGIKTELTALEN--LHFWQRFHGSGNAAT--IWEALAQVGLAGLE-DLPV 128

Query: 482 GYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLD 525
           G           LS G+++RV++AR  L   P+ I DE  ++LD
Sbjct: 129 GQ----------LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162


>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
           with duplicated ATPase domains/Translation elongation
           factor EF-3b [Amino acid transport and metabolism,
           Translation, ribosomal structure and biogenesis].
          Length = 582

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 68/317 (21%), Positives = 112/317 (35%), Gaps = 71/317 (22%)

Query: 243 LEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSH----AVYIG-------- 290
           LE Y+  +K +++ V+    +LN           V T II         Y G        
Sbjct: 237 LENYLQTWKITSLIVSHDRNFLN----------TVCTDIIHLENLKLDYYKGNYSQFVKT 286

Query: 291 ---EQTVGDFVFINTLLTQLAIPLNILGTIYRDSR----QSFIEIEELLNILNE---KIE 340
               +      F   +  +  + + I    Y  +R    QS I++   L  L     ++ 
Sbjct: 287 KPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVL 346

Query: 341 IQNAVNSKDLKIKNGHIVFNNVSFSYN-HHNCIFKGISFEIAPSKKTALIGESGVGKSTV 399
           I     ++   +   ++  + V+F Y        K +  +     + + +GE+G GKST+
Sbjct: 347 IGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTL 406

Query: 400 AKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNAS 459
            K           I+  D    + I     R  I    Q  +   D L  N+        
Sbjct: 407 LK-----------ILKGDLTPTRGIVGRHPRLRIKYFAQHHV---DFLDKNV-------- 444

Query: 460 DQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK----------LSGGEKQRVSIARAIL 509
                 AV+  + KSF  K        +G  GL           LSGG+K RV+ A    
Sbjct: 445 -----NAVDFME-KSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTW 498

Query: 510 KNPPIIIFDEATSSLDI 526
            NP +++ DE T+ LD 
Sbjct: 499 NNPHLLVLDEPTNHLDR 515



 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 43/199 (21%), Positives = 91/199 (45%), Gaps = 23/199 (11%)

Query: 353 KNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
           K+  I  +N   +Y     +    +  ++  ++  L+G +G+GKST+ + +         
Sbjct: 77  KSKDIHIDNFDLAYGGKI-LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------- 128

Query: 413 IITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQL 472
                   +     E   +        ++L +DT R + L     A ++EL A + + ++
Sbjct: 129 ------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFL-----AEEKELLAGLTLEEI 177

Query: 473 KSFIMKLPNGYDTVVGERGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERH 531
              I+    G+   +  +  K LSGG + R+++ARA+   P +++ DE T+ LD++    
Sbjct: 178 YDKILA-GLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAW 236

Query: 532 IQTALATLSKNRTTLVIAH 550
           ++  L T     T+L+++H
Sbjct: 237 LENYLQTWKI--TSLIVSH 253


>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
           component [Coenzyme metabolism].
          Length = 248

 Score = 58.5 bits (141), Expect = 5e-09
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 25/218 (11%)

Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL-RQTIG 434
           +S E+   +   L+G +G GKST+   +  +    G I    GQ ++  +   L R    
Sbjct: 18  LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQ-FAGQPLEAWSATELARHRAY 76

Query: 435 IIPQDTILFN-DTLRYNILYGNPNASDQELCAAV-EVAQLKSFIMKLPNGYDTVVGERGL 492
           +  Q T  F      Y  L+      D+     + +VA   +   KL    +        
Sbjct: 77  LSQQQTPPFAMPVWHYLTLH----QPDKTRTELLNDVAGALALDDKLGRSTN-------- 124

Query: 493 KLSGGEKQRVSIARAILK-----NPP--IIIFDEATSSLDIITERHIQTALATLSKNRTT 545
           +LSGGE QRV +A  +L+     NP   +++ DE  +SLD+  +  +   L+ L +    
Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLA 184

Query: 546 LVIA-HRLS-TITDADNIIVFDQGTVVESGSHENLISQ 581
           +V++ H L+ T+  A    +  +G ++ SG  E +++ 
Sbjct: 185 IVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222


>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
           component/CCR4 associated factor [General function
           prediction only, Transcription].
          Length = 291

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 35/179 (19%), Positives = 77/179 (43%), Gaps = 7/179 (3%)

Query: 351 KIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIK 410
            + +  I  + + F Y   + IF   + ++    +  L+G +G GK+T+ K+L   + + 
Sbjct: 8   AVSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG 67

Query: 411 GGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVA 470
           GG++ + G+        SL  +  +                +    + S + +   V   
Sbjct: 68  GGVVQVLGRS--AFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD 125

Query: 471 --QLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
             + +  ++ +    D  +  R  K+S G+++RV I   +LK   +++ DE T  LD++
Sbjct: 126 DPERREKLIDI---LDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVL 181


>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 18/206 (8%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
           + + ++ EI P    A++G+SG GK+T+ +++      +G           ++ K ++  
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457

Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERG 491
            I    +        L +  L         +L AAVE+   ++ +       D V+  R 
Sbjct: 458 LIPGEYEPEFGEVTILEH--LRSKTG----DLNAAVEILN-RAGLS------DAVLYRRK 504

Query: 492 L-KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRT-TLVIA 549
             +LS G+K+R  +A+ + + P +++ DE  + LD +T   +   ++ L++    TL++ 
Sbjct: 505 FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564

Query: 550 HRLSTITDA---DNIIVFDQGTVVES 572
                + +A   D +I+   G V  +
Sbjct: 565 THRPEVGNALRPDTLILVGYGKVPVN 590


>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
           excision repair in eubacteria is a process that repairs
           DNA damage by the removal of a 12-13-mer oligonucleotide
           containing the lesion.  Recognition and cleavage of the
           damaged DNA is a multistep ATP-dependent reaction that
           requires the UvrA, UvrB, and UvrC proteins.  Both UvrA
           and UvrB are ATPases, with UvrA having two ATP binding
           sites, which have the characteristic signature of the
           family of ABC proteins, and UvrB having one ATP binding
           site that is structurally related to that of helicases..
          Length = 176

 Score = 54.9 bits (132), Expect = 7e-08
 Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 55/216 (25%)

Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITK 426
           N HN   + +   I  +    + G SG GKST+                   + +    K
Sbjct: 7   NVHN--LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-----------------EGLYASGK 47

Query: 427 ESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTV 486
             L   +    ++ ++F D L                           F++ +  GY T+
Sbjct: 48  ARLISFLPKFSRNKLIFIDQL--------------------------QFLIDVGLGYLTL 81

Query: 487 VGERGLKLSGGEKQRVSIARAILKNPP--IIIFDEATSSLDIITERHIQTALATL-SKNR 543
            G++   LSGGE QRV +A  +   PP  + I DE ++ L       +   +  L     
Sbjct: 82  -GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140

Query: 544 TTLVIAHRLSTITDADNIIVF------DQGTVVESG 573
           T ++I H L  ++ AD II F        G VV SG
Sbjct: 141 TVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176


>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
           (RLI) is a key enzyme in ribosomal biogenesis, formation
           of translation preinitiation complexes, and assembly of
           HIV capsids.  RLI's are not transport proteins, and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLI's have an N-terminal
           Fe-S domain and two nucleotide-binding domains, which
           are arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 177

 Score = 54.6 bits (131), Expect = 8e-08
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 480 PNGYDT-------VVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHI 532
           PNG +        V   + + LSGGE QRV+IA A+L+N    +FDE ++ LDI    + 
Sbjct: 51  PNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNA 110

Query: 533 QTALATLSKN--RTTLVIAHRLSTITD-ADNIIVFD 565
             A+  LS+   +T LV+ H L+ +   +D I VF+
Sbjct: 111 ARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146


>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
           recombination, and repair].
          Length = 935

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 494 LSGGEKQRVSIARAILK---NPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIA 549
           LSGGE QRV +A+ + K      + I DE T+ L     + +   L  L  K  T +VI 
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882

Query: 550 HRLSTITDADNIIVF------DQGTVVESGSHENLISQGGIYTSMWKKQ 592
           H L  I  AD II          G +V SG+ E +      YT  + K+
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931



 Score = 39.4 bits (92), Expect = 0.003
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 21/111 (18%)

Query: 494 LSGGEKQRVSIARAILKN--PPIIIFDEATSSLDIITERHIQTALATLSKNR----TTLV 547
           LSGGE QR+ +A  I       + + DE +  L    +R  +  + TL + R    T +V
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH---QRDNERLIETLKRLRDLGNTVIV 538

Query: 548 IAHRLSTITDADNII-------VFDQGTVVESGSHENLI----SQGGIYTS 587
           + H   TI  AD+II           G +V  G+ E L+    S  G Y S
Sbjct: 539 VEHDEDTIRAADHIIDIGPGAGEHG-GEIVAEGTPEELLANPESLTGQYLS 588



 Score = 27.8 bits (62), Expect = 9.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVA 400
           HN   K I  EI  +K   + G SG GKS++A
Sbjct: 14  HN--LKNIDLEIPRNKLVVITGLSGSGKSSLA 43


>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 261

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 48/240 (20%)

Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKST---------VAKLLYRLYDIKGGIITID 417
             +N   K I  +I     T + G SG GKS+         +A+ L+   +  G    I+
Sbjct: 7   RENN--LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIE 64

Query: 418 G-QDIKKITKESLRQTIGIIPQ----------DTI--LFNDTL---RYN-----ILYGNP 456
           G + I K+     +  IG  P+          D I  LF +     RYN     + Y   
Sbjct: 65  GLEHIDKVIVID-QSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGK 123

Query: 457 NASD---QELCAAVE-------VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIAR 506
           + +D     +  A+E       +A+    +  +  GY  + G+    LSGGE QR+ +A+
Sbjct: 124 SIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKL-GQPATTLSGGEAQRIKLAK 182

Query: 507 AILK---NPPIIIFDEATSSLDIITERHIQTALATL-SKNRTTLVIAHRLSTITDADNII 562
            + K      + I DE T+ L     + +   L  L  K  T +VI H L  I  AD II
Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242


>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3  Elongation factor 3 (EF-3) is a
           cytosolic protein required by fungal ribosomes for in
           vitro protein synthesis and for in vivo growth.  EF-3
           stimulates the binding of the EF-1: GTP: aa-tRNA ternary
           complex to the ribosomal A site by facilitated release
           of the deacylated tRNA from the E site.  The reaction
           requires ATP hydrolysis.  EF-3 contains two ATP
           nucleotide binding sequence (NBS) motifs.  NBSI is
           sufficient for the intrinsic ATPase activity. NBSII is
           essential for the ribosome-stimulated functions..
          Length = 144

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 493 KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRL 552
           +LSGGEK R+++A+ +L+NP +++ DE T+ LD+ +   ++ AL       T ++++H  
Sbjct: 70  QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR 127

Query: 553 STITD-ADNIIVFDQGT 568
             +   A  II  + G 
Sbjct: 128 YFLDQVATKIIELEDGK 144



 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLY-RLYDIKGGIIT 415
           I   N+S +Y     + K IS  I P  +  L+G +G GKST+ KL+   L   +G +  
Sbjct: 1   IELENLSKTYGGKL-LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59

Query: 416 IDGQDI 421
                I
Sbjct: 60  GSTVKI 65


>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
           (PDR) family of ATP-binding cassette (ABC) transporters.
           PDR is a well-described phenomenon occurring in fungi
           and shares several similarities with processes in
           bacteria and higher eukaryotes.  This PDR subfamily
           represents domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 192

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 44/202 (21%)

Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDIKGGIITIDGQDIKKITKESL 429
           +   IS  + P   TAL+GESG GK+T+  +L   +   +  G I I+G+ + K    + 
Sbjct: 22  LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NF 77

Query: 430 RQTIGIIPQDTILF-NDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
           +++ G + Q  +   N T+R  + +                A L                
Sbjct: 78  QRSTGYVEQQDVHSPNLTVREALRFS---------------ALL---------------- 106

Query: 489 ERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKN-RTTLV 547
            RGL +   +++R++I   +   P I+  DE TS LD     +I   L  L+ + +  L 
Sbjct: 107 -RGLSVE--QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163

Query: 548 IAHRLS--TITDADNIIVFDQG 567
             H+ S       D +++  +G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRG 185


>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
           processing and modification].
          Length = 592

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 48/200 (24%)

Query: 382 PSKKTALIGESGVGKSTVAKLL-----------------------YRLYDIKGGIITIDG 418
           P +   L+G +G+GKST  K+L                       +R  +++     I  
Sbjct: 99  PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILE 158

Query: 419 QDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMK 478
            ++K I K    Q +  IP+       T+   +   +   + +E+C  +++  L      
Sbjct: 159 DNLKAIIKP---QYVDQIPR---AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLL----- 207

Query: 479 LPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL-- 536
                D  V +    LSGGE QR +IA   ++   + +FDE +S LD+  ++ ++ A+  
Sbjct: 208 -----DREVEQ----LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV--KQRLKAAITI 256

Query: 537 -ATLSKNRTTLVIAHRLSTI 555
            + ++ +R  +V+ H LS +
Sbjct: 257 RSLINPDRYIIVVEHDLSVL 276



 Score = 39.5 bits (92), Expect = 0.003
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 28/183 (15%)

Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTL 447
           ++GE+G GK+T  ++L        G +  D      +   S +    I P+        L
Sbjct: 372 MLGENGTGKTTFIRML-------AGRLKPDEGGEIPVLNVSYK-PQKISPKREGTVRQLL 423

Query: 448 RYNI--LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIA 505
              I   Y +P              Q  + +MK P   + ++ +    LSGGE QRV++A
Sbjct: 424 HTKIRDAYMHP--------------QFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALA 468

Query: 506 RAILKNPPIIIFDEATSSLDIITERHIQTALA--TLSKNRTTLVIAHRLSTITD-ADNII 562
             + K   + + DE ++ LD          +    L   +T  V+ H     T  AD +I
Sbjct: 469 LCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 528

Query: 563 VFD 565
           VF+
Sbjct: 529 VFE 531


>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI s are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLIs have an N-terminal
           Fe-S domain and two nucleotide binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 255

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 49/208 (23%)

Query: 381 APSKKTALIGESGVGKSTVAKLL-----------------------YRLYDIKGGIITID 417
              +   L+G +G+GKST  K+L                       +R  +++     + 
Sbjct: 24  REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83

Query: 418 GQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIM 477
             D+K I K    Q + +IP+        +   +   +      EL   +E+  +     
Sbjct: 84  EGDVKVIVKP---QYVDLIPKA---VKGKVGELLKKKDERGKLDELVDQLELRHVL---- 133

Query: 478 KLPNGYDTVVGERGL-KLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTAL 536
                      +R + +LSGGE QRV+IA A+ ++     FDE +S LDI    +    +
Sbjct: 134 -----------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182

Query: 537 ATLSKN-RTTLVIAHRLSTITD--ADNI 561
             L+++    LV+ H L+ + D  +D I
Sbjct: 183 RELAEDDNYVLVVEHDLA-VLDYLSDYI 209


>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
           component [General function prediction only].
          Length = 249

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 35/220 (15%)

Query: 376 ISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQ-DIKKITKESLR---- 430
           +SF + P +   LIG +G GK+T+  ++      + G +  DG  D+ K+ +  +     
Sbjct: 24  LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83

Query: 431 ----QTIGIIPQDTILFNDTLRYNI-----------LYGNPNASDQELCAAVEVAQLKSF 475
               Q   +    T+  N  L  N            L         EL A + +   +  
Sbjct: 84  GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR 143

Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
           +  L              LS G+KQ + I   + ++P +++ DE  + +           
Sbjct: 144 LAAL--------------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAEL 189

Query: 536 LATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGS 574
           L +L+   + LV+ H +  + + AD + V  +G+V+  GS
Sbjct: 190 LKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229


>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
            chromosome partitioning].
          Length = 1163

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 494  LSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
            LSGGEK   ++A   AI K  P P  + DE  ++LD      +   +  +SK    +VI 
Sbjct: 1067 LSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126

Query: 550  HRLSTITDADNII 562
            HR  T+  AD ++
Sbjct: 1127 HRKGTMEAADRLV 1139


>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
           protein expressed in rat epithelial cells which is
           thought to have an important regulatory role in tight
           junction barrier function.  Barmotin belongs to the SMC
           protein family.  SMC proteins are large (approximately
           110 to 170 kDa), and each is arranged into five
           recognizable domains.  Amino-acid sequence homology of
           SMC proteins between species is largely confined to the
           amino- and carboxy-terminal globular domains. The
           amino-terminal domain contains a 'Walker A'
           nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 197

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 494 LSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
           LSGGEK   ++A   AI +  P P  + DE  ++LD          L   SK    +VI 
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173

Query: 550 HRLSTITDADNII 562
           HR  T+  AD + 
Sbjct: 174 HRKGTMEAADRLY 186


>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins,
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 226

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 53/235 (22%)

Query: 369 HNCIFKGISFEIAPSKKTALIGESGVGKSTVA-KLLY----RLYD------IKGGIITID 417
           HN   K +  +I  +K   + G SG GKS++A   +Y    R Y        +  +  +D
Sbjct: 9   HN--LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMD 66

Query: 418 GQDIKKI-------------TKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELC 464
             D+  I             T  + R T+G + +      D LR  +L+           
Sbjct: 67  KPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTE----IYDYLR--LLF----------- 109

Query: 465 AAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN--PPIIIFDEATS 522
           A V + +   F++ +  GY T+       LSGGE QR+ +A  I       + + DE + 
Sbjct: 110 ARVGIRERLGFLVDVGLGYLTLSRSAP-TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 168

Query: 523 SLDIITERHIQTALATLSKNR----TTLVIAHRLSTITDADNIIVFDQGTVVESG 573
            L     R     + TL + R    T LV+ H   TI  AD++I    G  V  G
Sbjct: 169 GLH---PRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGG 220


>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain is
            found at the N terminus of SMC proteins. The SMC
            (structural maintenance of chromosomes) superfamily
            proteins have ATP-binding domains at the N- and
            C-termini, and two extended coiled-coil domains separated
            by a hinge in the middle. The eukaryotic SMC proteins
            form two kind of heterodimers: the SMC1/SMC3 and the
            SMC2/SMC4 types. These heterodimers constitute an
            essential part of higher order complexes, which are
            involved in chromatin and DNA dynamics. This family also
            includes the RecF and RecN proteins that are involved in
            DNA metabolism and recombination.
          Length = 1162

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 12/77 (15%)

Query: 494  LSGGEKQRVSIA--RAILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTT---- 545
            LSGGEK  V++A   AI K  P P  + DE  ++LD   ++++   +A   K  +     
Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALD---DQNVS-RVANYLKELSKNAQF 1134

Query: 546  LVIAHRLSTITDADNII 562
            +VI+ R   +  AD ++
Sbjct: 1135 IVISLREEMLEKADRLV 1151


>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
           the ATP-binding cassette of ABC transporters, but are
           not associated with membrane-spanning domains.  The
           conserved ATP-binding motifs common to Rad50 and the ABC
           transporter family include the Walker A and Walker B
           motifs, the Q loop, a histidine residue in the switch
           region, a D-loop, and a conserved LSGG sequence.  This
           conserved sequence, LSGG, is the most specific and
           characteristic motif of this family and is thus known as
           the ABC signature sequence..
          Length = 204

 Score = 36.7 bits (85), Expect = 0.018
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 15/81 (18%)

Query: 494 LSGGEKQ------RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL------SK 541
            SGGEK       R+++A     N  I+  DE T++LD   E +I+ +LA +       K
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQK 172

Query: 542 NRTTLVIAHRLSTITDADNII 562
           N   +VI H    +  AD+I 
Sbjct: 173 NFQLIVITHDEELVDAADHIY 193


>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain. 
          Length = 168

 Score = 36.2 bits (85), Expect = 0.030
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406
           +AP+  T LI GESG GK   A+ +++L
Sbjct: 18  VAPTDATVLITGESGTGKELFARAIHQL 45


>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
           cellular processes other than transport.  These families
           are characterised by the fact that the ABC subunit is
           made up of duplicated, fused ABC modules (ABC2).  No
           known transmembrane proteins or domains are associated
           with these proteins..
          Length = 162

 Score = 35.3 bits (81), Expect = 0.047
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 492 LKLSGGEKQRVSIARAI----LKNPPIIIFDEATSSLDIITERHIQTALA-TLSKNRTTL 546
           L+LSGGEK+  ++A  +    LK  P+ I DE    LD    + +  A+   L K    +
Sbjct: 76  LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135

Query: 547 VIAHRLSTITDADNII 562
           VI H       AD +I
Sbjct: 136 VITHLPELAELADKLI 151


>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
           (ATP-binding cassette) transporter nucleotide-binding
           domain; ABC transporters are a large family of proteins
           involved in the transport of a wide variety of different
           compounds including sugars, ions, peptides, and more
           complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 276

 Score = 35.2 bits (81), Expect = 0.054
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 494 LSGGEKQRVSIA-RAIL---KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
            SGGE  R+ +A +AIL      P +IFDE  + +     + +   L  LS++   L I 
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCIT 230

Query: 550 H 550
           H
Sbjct: 231 H 231


>gnl|CDD|32858 COG3044, COG3044, Predicted ATPase of the ABC class [General
           function prediction only].
          Length = 554

 Score = 34.6 bits (79), Expect = 0.085
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 475 FIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDII 527
           FI  LP G DT     G   SG       I  AI      ++ DE TS+ +++
Sbjct: 303 FINHLPGGKDTPDFVTGDA-SGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLL 354


>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
           recombination, and repair].
          Length = 908

 Score = 34.3 bits (78), Expect = 0.100
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 494 LSGGEKQRVSIARAI--------LKNPPIIIFDEATSSLDIITERHIQTALATL----SK 541
           LSGGE+   S+A  +             ++  DE   +LD   E  ++     L    S 
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLD---EERLEKLAEILEELLSD 872

Query: 542 NRTTLVIAH 550
            R  ++I+H
Sbjct: 873 GRQIIIISH 881


>gnl|CDD|36349 KOG1134, KOG1134, KOG1134, Uncharacterized conserved protein
           [General function prediction only].
          Length = 728

 Score = 34.2 bits (78), Expect = 0.10
 Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 8   SLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKW-------VTESLI 60
           +L  L K++P++ P         +I      +A    +  +P  L++       ++ S  
Sbjct: 386 NLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEE 445

Query: 61  EQSTASKTTSYLTIGIVILITSYGT-MRVVNLISNHIRDF 99
           E+S  +K   +L + + +++T  G+ +R +  I +  R  
Sbjct: 446 ERSALNKYYIFLLVNVFLVVTLSGSALRQLLSILSTPRLI 485


>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
           secretion].
          Length = 407

 Score = 33.4 bits (76), Expect = 0.19
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 382 PSKKTALIGESGVGKST-VAKLLYRLYDIKG----GIITID 417
             +  AL+G +GVGK+T +AKL  R   +K      IIT D
Sbjct: 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD 242


>gnl|CDD|33404 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type
           ATPase, and DNA binding domains [Transcription / Signal
           transduction mechanisms].
          Length = 550

 Score = 33.0 bits (75), Expect = 0.26
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406
           +A S  T LI GE+G GK  VA+ +++L
Sbjct: 242 VAKSDSTVLIRGETGTGKELVARAIHQL 269


>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
           (vWA) domain [General function prediction only].
          Length = 4600

 Score = 32.0 bits (72), Expect = 0.49
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 282 ISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEI 341
           +   AV      +  F  +  +  ++   L I         QS   +  L      +I+I
Sbjct: 369 LFEEAVDCFGAFIPHFRSLLKIKKRMGSSLGIGVEERLRLYQSVPNVLNL----KHEIDI 424

Query: 342 QNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAK 401
                +K  +I    +  N+ +F+ +    + + + + I  ++ T L+GE+G GK+T+ +
Sbjct: 425 GRCALTK-TEIPIISLSGNSFAFT-SCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQ 482

Query: 402 LLYRLYDIKGGIITIDGQ 419
            L      K  +I    Q
Sbjct: 483 YLALKLHFKLTVINKSQQ 500


>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
           AAA-type ATPase, and DNA-binding domains [Signal
           transduction mechanisms].
          Length = 464

 Score = 31.8 bits (72), Expect = 0.54
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRL 406
           +APS  + LI GESG GK  VA+ +++ 
Sbjct: 160 VAPSDASVLITGESGTGKELVARAIHQA 187


>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
           factor type A (vWA) domain [General function prediction
           only].
          Length = 1856

 Score = 31.9 bits (72), Expect = 0.57
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 367 NHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
                + + I+  +  ++   L+GE+GVGK++V + L  L   K  ++
Sbjct: 49  RSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVV 96


>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
           metabolism].
          Length = 172

 Score = 31.7 bits (72), Expect = 0.59
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 382 PSKKTALIGESGVGKSTVAKLL-----YRLYDIKGGIITIDGQDIKKITKE 427
            +    LIG  G GKST+ + L         D    I    G  I +I +E
Sbjct: 1   RNMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEE 51


>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
           cellular Activities) superfamily represents an ancient
           group of ATPases belonging to the ASCE (for additional
           strand, catalytic E) division of the P-loop NTPase fold.
           The ASCE division also includes ABC, RecA-like,
           VirD4-like, PilT-like, and SF1/2 helicases. Members of
           the AAA+ ATPases function as molecular chaperons, ATPase
           subunits of proteases, helicases, or nucleic-acid
           stimulated ATPases. The AAA+ proteins contain several
           distinct features in addition to the conserved
           alpha-beta-alpha core domain structure and the Walker A
           and B motifs of the P-loop NTPases..
          Length = 151

 Score = 31.3 bits (71), Expect = 0.78
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKKITKES 428
           L G  G GK+T+A+ +   L+      + ++  D+ +    +
Sbjct: 24  LYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA 65


>gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 567

 Score = 31.4 bits (71), Expect = 0.79
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 510 KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT-LVIAHRLSTITD 557
           ++  I++ DEA   LD+  E  + T L+ L K R T L  A +   + D
Sbjct: 156 RSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVED 204


>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
           shikimate pathway, a seven-step biosynthetic pathway
           which converts erythrose-4-phosphate to chorismic acid,
           found in bacteria, fungi and plants. Chorismic acid is a
           important intermediate in the synthesis of aromatic
           compounds, such as aromatic amino acids, p-aminobenzoic
           acid, folate and ubiquinone. Shikimate kinase catalyses
           the phosphorylation of the 3-hydroxyl group of shikimic
           acid using ATP..
          Length = 154

 Score = 31.3 bits (71), Expect = 0.85
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 387 ALIGESGVGKSTVAKLL-----YRLYDIKGGIITIDGQDIKKITKE 427
            LIG  G GK+TV +LL         D+   I    G  I +I  E
Sbjct: 3   VLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAE 48


>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type
           ATPase domain and a DNA-binding domain [Transcription /
           Signal transduction mechanisms].
          Length = 403

 Score = 31.1 bits (70), Expect = 0.89
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRLY 407
            APS    LI GE+G GK   A+L++ L 
Sbjct: 97  YAPSGLPVLIIGETGTGKELFARLIHALS 125


>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
           metabolism].
          Length = 222

 Score = 30.9 bits (70), Expect = 0.98
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 41/146 (28%)

Query: 387 ALIGESGVGKSTVAKLL--------------YRLYDIKGGIITIDGQDIKKITKESLRQT 432
           A+ G +G GKSTVAK+L              YR   +      +D  D   +   +    
Sbjct: 8   AIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELD 67

Query: 433 IGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGL 492
           I  +  D +  N       +               EV    S +  +P   + +V     
Sbjct: 68  ISFVNDDRVFLNGEDVSEEIRTE------------EVGNAASKVAAIPEVREALV----- 110

Query: 493 KLSGGEKQRVSIARAILKNPPIIIFD 518
                + Q     RA  KN P I+ D
Sbjct: 111 -----KLQ-----RAFAKNGPGIVAD 126


>gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 786

 Score = 31.0 bits (70), Expect = 0.99
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKKITKESLRQTIGIIP 437
            +G +GVGK+ +AK L   L+  +  +I ID  +   + K S+ + IG  P
Sbjct: 526 FLGPTGVGKTELAKALAEALFGDEQALIRIDMSE--YMEKHSVSRLIGAPP 574


>gnl|CDD|31539 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion
           transport and metabolism].
          Length = 278

 Score = 30.6 bits (69), Expect = 1.1
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
           ++ A+ G+ G+GKST ++ L       G  + I G D K    +S R  +G     T+L 
Sbjct: 2   RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPK---ADSTRLLLGGKAIPTVL- 57

Query: 444 NDTLRYNILYGNPNASD 460
            DTLR      +    D
Sbjct: 58  -DTLREKGEVEDLELED 73


>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC.  YjeQ (YloQ in Bacillus subtilis)
           represents a protein family whose members are broadly
           conserved in bacteria and have been shown to be
           essential to the growth of E. coli and B. subtilis.
           Proteins of the YjeQ family contain all sequence motifs
           typical of the vast class of P-loop-containing GTPases,
           but show a circular permutation, with a G4-G1-G3 pattern
           of motifs as opposed to the regular G1-G3-G4 pattern
           seen in most GTPases. All YjeQ family proteins display a
           unique domain architecture, which includes an N-terminal
           OB-fold RNA-binding domain, the central permuted GTPase
           domain, and a zinc knuckle-like C-terminal cysteine
           domain. This domain architecture suggests a role for
           YjeQ as a regulator of translation..
          Length = 287

 Score = 30.5 bits (69), Expect = 1.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 384 KKTALIGESGVGKSTVAKLL 403
           K + L+G+SGVGKST+   L
Sbjct: 162 KTSVLVGQSGVGKSTLINAL 181


>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
           transfer from ATP to gluconate. The resulting product
           gluconate-6-phoshate is an important precursor of
           gluconate metabolism. GntK acts as a dimmer composed of
           two identical subunits..
          Length = 150

 Score = 30.2 bits (68), Expect = 1.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423
           ++G SG GKSTV K L      + G   IDG D+  
Sbjct: 4   VMGVSGSGKSTVGKALAE----RLGAPFIDGDDLHP 35


>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. 
          Length = 161

 Score = 30.2 bits (69), Expect = 1.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 386 TALIGESGVGKST 398
           + L G+SGVGKST
Sbjct: 38  SVLAGQSGVGKST 50


>gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains.  The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 243

 Score = 30.2 bits (68), Expect = 1.6
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 493 KLSGGEKQRVSIAR--AILK--NPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548
           +LSGG+K  V++A   AI K    P  +FDE  ++LD      +   +  LS     +  
Sbjct: 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITT 217

Query: 549 AHRLSTITDADNI 561
             R   +  AD  
Sbjct: 218 TFRPELLEVADKF 230


>gnl|CDD|36440 KOG1226, KOG1226, KOG1226, Integrin beta subunit (N-terminal
           portion of extracellular region) [Signal transduction
           mechanisms, Extracellular structures].
          Length = 783

 Score = 29.9 bits (67), Expect = 1.9
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 309 IPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNH 368
           IP + +G +  DS      I E  N L+ K+ +++    + L +       N VSF    
Sbjct: 344 IPGSAVGVLSEDSSNIVQLIIEAYNSLSSKVILEDENQPEGLSLSYTSSCSNGVSFPGKR 403

Query: 369 HNC----IFKGISFEIAPSKK 385
             C    I   ++FE++ + K
Sbjct: 404 RKCSGITIGDEVTFEVSVTAK 424


>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
           Holliday junction resolvase [DNA replication,
           recombination, and repair].
          Length = 436

 Score = 29.8 bits (67), Expect = 2.0
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIITIDG-----QDIKKITKESLRQTIGIIPQDTIL 442
           L G  G GK+T+A+L+            +       +D+++I +E+ R+   +  + TIL
Sbjct: 53  LWGPPGTGKTTLARLIAG--TTNAAFEALSAVTSGVKDLREIIEEA-RKNRLLGRR-TIL 108

Query: 443 FNDTL-RYN 450
           F D + R+N
Sbjct: 109 FLDEIHRFN 117


>gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated
           permease component [Inorganic ion transport and
           metabolism].
          Length = 523

 Score = 29.9 bits (67), Expect = 2.1
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 4   ARFPSLRTLKKLW----PYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESL 59
           AR   L  L ++     P+  P    +L   +    F + AS+ + +GI     +   SL
Sbjct: 114 ARNYRLSFLLRMARLYIPFAMPGIAANLMPSMSDGFFFITASEVITVGIHTYRLFGIGSL 173

Query: 60  IEQSTASKTTSYLTIGIVIL 79
           +++  A    +   IG+ IL
Sbjct: 174 LDELLAIGQYNLAYIGLAIL 193


>gnl|CDD|32599 COG2607, COG2607, Predicted ATPase (AAA+ superfamily) [General
           function prediction only].
          Length = 287

 Score = 29.9 bits (67), Expect = 2.1
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGG-IITIDGQDIKKITK--ESLRQTIGIIPQ 438
           P+    L G  G GKS++ K L   Y  +G  ++ +D +D+  +    E LR      P+
Sbjct: 84  PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR----PE 139

Query: 439 DTILFNDTLRY 449
             ILF D L +
Sbjct: 140 KFILFCDDLSF 150


>gnl|CDD|133310 cd04110, Rab35, Rab35 subfamily.  Rab35 is one of several Rab
           proteins to be found to participate in the regulation of
           osteoclast cells in rats. In addition, Rab35 has been
           identified as a protein that interacts with
           nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in
           human cells.  Overexpression of NPM-ALK is a key
           oncogenic event in some anaplastic large-cell lymphomas;
           since Rab35 interacts with N|PM-ALK, it may provide a
           target for cancer treatments. GTPase activating proteins
           (GAPs) interact with GTP-bound Rab and accelerate the
           hydrolysis of GTP to GDP. Guanine nucleotide exchange
           factors (GEFs) interact with GDP-bound Rabs to promote
           the formation of the GTP-bound state.  Rabs are further
           regulated by guanine nucleotide dissociation inhibitors
           (GDIs), which facilitate Rab recycling by masking
           C-terminal lipid binding and promoting cytosolic
           localization.  Most Rab GTPases contain a lipid
           modification site at the C-terminus, with sequence
           motifs CC, CXC, or CCX. Lipid binding is essential for
           membrane attachment, a key feature of most Rab proteins.
          Length = 199

 Score = 29.8 bits (67), Expect = 2.3
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 385 KTALIGESGVGKSTVAKLLYRLYD--IKGGIITIDGQDIK 422
           K  +IG+SGVGKS+   LL R  D    G  IT  G D K
Sbjct: 8   KLLIIGDSGVGKSS---LLLRFADNTFSGSYITTIGVDFK 44


>gnl|CDD|143965 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine
           dehydrogenase. 
          Length = 237

 Score = 29.8 bits (68), Expect = 2.4
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 15/71 (21%)

Query: 373 FKGISFEIAPSKKTALIGESG-VGKSTVAKLLYRL-------YDIKGGIITIDGQDIKKI 424
             G S E     KT  +   G VG S  A+ L  L        D  G I   +G DI+++
Sbjct: 25  LGGDSLE----GKTVAVQGFGNVG-SYAAEKLLELGAKVVAVSDSSGYIYDPNGIDIEEL 79

Query: 425 T--KESLRQTI 433
              KE     +
Sbjct: 80  LELKEEGGGRV 90


>gnl|CDD|133271 cd01868, Rab11_like, Rab11-like.  Rab11a, Rab11b, and Rab25 are
           closely related, evolutionary conserved Rab proteins
           that are differentially expressed. Rab11a is
           ubiquitously synthesized, Rab11b is enriched in brain
           and heart and Rab25 is only found in epithelia. Rab11/25
           proteins seem to regulate recycling pathways from
           endosomes to the plasma membrane and to the trans-Golgi
           network. Furthermore, Rab11a is thought to function in
           the histamine-induced fusion of tubulovesicles
           containing H+, K+ ATPase with the plasma membrane in
           gastric parietal cells and in insulin-stimulated
           insertion of GLUT4 in the plasma membrane of
           cardiomyocytes. Overexpression of Rab25 has recently
           been observed in ovarian cancer and breast cancer, and
           has been correlated with worsened outcomes in both
           diseases. In addition, Rab25 overexpression has also
           been observed in prostate cancer, transitional cell
           carcinoma of the bladder, and invasive breast tumor
           cells. GTPase activating proteins (GAPs) interact with
           GTP-bound Rab and accelerate the hydrolysis of GTP to
           GDP. Guanine nucleotide exchange factors (GEFs) interact
           with GDP-bound Rabs to promote the formation of the
           GTP-bound state.  Rabs are further regulated by guanine
           nucleotide dissociation inhibitors (GDIs), which
           facilitate Rab recycling by masking C-terminal lipid
           binding and promoting cytosolic localization.   Most Rab
           GTPases contain a lipid modification site at the
           C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
           binding is essential for membrane attachment, a key
           feature of most Rab proteins.  Due to the presence of
           truncated sequences in this CD, the lipid modification
           site is not available for annotation.
          Length = 165

 Score = 29.4 bits (67), Expect = 2.5
 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 17/52 (32%)

Query: 385 KTALIGESGVGKSTVAKLLYRL------YDIKGGI--------ITIDGQDIK 422
           K  LIG+SGVGKS    LL R        D K  I        I IDG+ IK
Sbjct: 5   KIVLIGDSGVGKS---NLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIK 53


>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
           only].
          Length = 301

 Score = 29.5 bits (66), Expect = 2.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 379 EIAPSKKTALIGESGVGKST 398
           E+   K T L+G+SGVGKST
Sbjct: 160 ELLAGKITVLLGQSGVGKST 179


>gnl|CDD|145830 pfam02881, SRP54_N, SRP54-type protein, helical bundle domain. 
          Length = 77

 Score = 29.5 bits (67), Expect = 3.0
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESL 429
           + AL+ E+ VG  T  K++ RL ++ G     D ++IKK  KE L
Sbjct: 34  EEALL-EADVGVETTEKIIERLKELVGRKGLSDPEEIKKALKEEL 77


>gnl|CDD|35303 KOG0080, KOG0080, KOG0080, GTPase Rab18, small G protein
           superfamily [General function prediction only].
          Length = 209

 Score = 29.2 bits (65), Expect = 3.1
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 17/60 (28%)

Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRL--------------YDIKGGIITIDGQDIK 422
           S     + K  LIGESGVGKS+   LL R                D K  ++ +DG+ +K
Sbjct: 5   SSGYDTTFKILLIGESGVGKSS---LLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLK 61


>gnl|CDD|143853 pfam00071, Ras, Ras family.  Includes sub-families Ras, Rab, Rac,
           Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
           GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
           pfam00063. As regards Rab GTPases, these are important
           regulators of vesicle formation, motility and fusion.
           They share a fold in common with all Ras GTPases: this
           is a six-stranded beta-sheet surrounded by five
           alpha-helices.
          Length = 162

 Score = 29.4 bits (67), Expect = 3.1
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 21/54 (38%)

Query: 385 KTALIGESGVGKSTVAKLLYRL--------YD--------IKGGIITIDGQDIK 422
           K  L+G+ GVGKS+   LL R         Y          K   I +DG+ +K
Sbjct: 1   KLVLVGDGGVGKSS---LLIRFTQNKFPEEYIPTIGVDFYTK--TIEVDGKTVK 49


>gnl|CDD|143913 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding proteins,
           NifH/frxC family. 
          Length = 269

 Score = 29.3 bits (66), Expect = 3.3
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 384 KKTALIGESGVGKS-TVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTIL 442
           +K A+ G+ G+GKS T       L ++ G  + I G D K    +S R  +G   Q TI+
Sbjct: 1   RKIAIYGKGGIGKSTTSQNTSAALAEM-GKKVLIVGCDPK---ADSTRLILGGKAQPTII 56

Query: 443 FNDTLR 448
             DTLR
Sbjct: 57  --DTLR 60


>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase.  Enzyme that
           catalyses the phosphorylation of adenylylsulphate to
           3'-phosphoadenylylsulfate. This domain contains an ATP
           binding P-loop motif.
          Length = 157

 Score = 29.2 bits (66), Expect = 3.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIK 422
             G SG GKST+A  L R L+     +  +DG +++
Sbjct: 7   FTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVR 42


>gnl|CDD|73297 cd02034, CooC, The accessory protein CooC, which contains a
           nucleotide-binding domain (P-loop) near the N-terminus,
           participates in the maturation of the nickel center of
           carbon monoxide dehydrogenase (CODH). CODH from
           Rhodospirillum rubrum catalyzes the reversible oxidation
           of CO to CO2. CODH contains a nickel-iron-sulfur cluster
           (C-center) and an iron-sulfur cluster (B-center). CO
           oxidation occurs at the C-center. Three accessory
           proteins encoded by cooCTJ genes are involved in nickel
           incorporation into a nickel site. CooC functions as a
           nickel insertase that mobilizes nickel to apoCODH using
           energy released from ATP hydrolysis. CooC is a homodimer
           and has NTPase activities. Mutation at the P-loop
           abolishs its function..
          Length = 116

 Score = 29.0 bits (65), Expect = 3.5
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 385 KTALIGESGVGKSTVAKLLYRLYDIKGG-IITID 417
           K A+ G+ GVGK+T+A LL R    KG  ++ ID
Sbjct: 1   KIAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34


>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
           also known as guanylate kinase (GKase), catalyzes the
           reversible phosphoryl transfer from adenosine
           triphosphate (ATP) to guanosine monophosphate (GMP) to
           yield adenosine diphosphate (ADP) and guanosine
           diphosphate (GDP). It plays an essential role in the
           biosynthesis of guanosine triphosphate (GTP). This
           enzyme is also important for the activation of some
           antiviral and anticancer agents, such as acyclovir,
           ganciclovir, carbovir, and thiopurines..
          Length = 137

 Score = 29.0 bits (65), Expect = 3.5
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 19/79 (24%)

Query: 388 LIGESGVGKSTVAKLLYRLYDIKGGIIT-----------IDGQDIKKITKESLRQTIGII 436
           L G SGVGKST+ K L   +D   G              +DG D   ++KE         
Sbjct: 4   LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEF------- 56

Query: 437 PQDTILFNDTLRYNILYGN 455
            +  I   + L +   +GN
Sbjct: 57  -ERLIENGEFLEWAEFHGN 74


>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
           transport and metabolism].
          Length = 178

 Score = 29.1 bits (65), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 384 KKTALIGESGVGKSTVAKLLYRLYDI 409
            +  ++G  G GKST+AK L +   +
Sbjct: 1   MRILILGPPGAGKSTLAKKLAKKLGL 26


>gnl|CDD|38518 KOG3308, KOG3308, KOG3308, Uncharacterized protein of the uridine
           kinase family [Nucleotide transport and metabolism].
          Length = 225

 Score = 28.8 bits (64), Expect = 4.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 383 SKKTALIGESGV---GKSTVAKLLYRLY 407
           S KT ++G SG    GK+T+AK L+R +
Sbjct: 1   SMKTLIVGISGCTNSGKTTLAKSLHRFF 28


>gnl|CDD|30106 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
           myosin, involved in organelle transport. This catalytic
           (head) domain has ATPase activity and belongs to the
           larger group of P-loop NTPases. Myosins are
           actin-dependent molecular motors that play important
           roles in muscle contraction, cell motility, and
           organelle transport. The head domain is a molecular
           motor, which utilizes ATP hydrolysis to generate
           directed movement toward the plus end along actin
           filaments. A cyclical interaction between myosin and
           actin provides the driving force. Rates of ATP
           hydrolysis and consequently the speed of movement along
           actin filaments vary widely, from about 0.04 micrometer
           per second for myosin I to 4.5 micrometer per second for
           myosin II in skeletal muscle. Myosin II moves in
           discrete steps about 5-10 nm long and generates 1-5
           piconewtons of force. Upon ATP binding, the myosin head
           dissociates from an actin filament. ATP hydrolysis
           causes the head to pivot and associate with a new actin
           subunit. The release of Pi causes the head to pivot and
           move the filament (power stroke). Release of ADP
           completes the cycle..
          Length = 674

 Score = 28.7 bits (64), Expect = 4.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 390 GESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKES 428
           GESG GK+   K+L R     GG   ++G+ +++   ES
Sbjct: 95  GESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLES 133


>gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
           function prediction only].
          Length = 219

 Score = 28.8 bits (63), Expect = 4.2
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 382 PSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDT 440
              K  ++G+ GVGK+T+   L      +G   TI G      T E  R+ I +   DT
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI-GNLDPAKTIEPYRRNIKLQLWDT 61


>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
           reversible phosphorylation of cytidine monophosphate
           (CMP) to produce cytidine diphosphate (CDP), using ATP
           as the preferred phosphoryl donor..
          Length = 147

 Score = 28.9 bits (65), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
           A+ G +G GKSTVAKLL +      G+  +D   I+      L   +  IP+
Sbjct: 3   AIDGPAGSGKSTVAKLLAKKL----GLPYLDTGGIRTEEVGKLASEVAAIPE 50


>gnl|CDD|133266 cd01863, Rab18, Rab18 subfamily.  Mammalian Rab18 is implicated in
           endocytic transport and is expressed most highly in
           polarized epithelial cells. However, trypanosomal Rab,
           TbRAB18, is upregulated in the BSF (Blood Stream Form)
           stage and localized predominantly to elements of the
           Golgi complex.  In human and mouse cells, Rab18 has been
           identified in lipid droplets, organelles that store
           neutral lipids. GTPase activating proteins (GAPs)
           interact with GTP-bound Rab and accelerate the
           hydrolysis of GTP to GDP. Guanine nucleotide exchange
           factors (GEFs) interact with GDP-bound Rabs to promote
           the formation of the GTP-bound state.  Rabs are further
           regulated by guanine nucleotide dissociation inhibitors
           (GDIs), which facilitate Rab recycling by masking
           C-terminal lipid binding and promoting cytosolic
           localization. Most Rab GTPases contain a lipid
           modification site at the C-terminus, with sequence
           motifs CC, CXC, or CCX. Lipid binding is essential for
           membrane attachment, a key feature of most Rab proteins.
            Due to the presence of truncated sequences in this CD,
           the lipid modification site is not available for
           annotation.
          Length = 161

 Score = 28.8 bits (65), Expect = 4.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 17/52 (32%)

Query: 385 KTALIGESGVGKSTVAKLLYRL--------------YDIKGGIITIDGQDIK 422
           K  LIG+SGVGKS+   LL R                D K   +T+DG+ +K
Sbjct: 2   KILLIGDSGVGKSS---LLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVK 50


>gnl|CDD|145224 pfam01935, DUF87, Domain of unknown function DUF87.  The function
           of this prokaryotic domain is unknown. It contains
           several conserved aspartates and histidines that could
           be metal ligands.
          Length = 218

 Score = 28.5 bits (64), Expect = 5.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 383 SKKTALIGESGVGKST-VAKLLYRLY-DIKGGIITID 417
           S+  A++G +G GKS  VA LL  L       ++  D
Sbjct: 23  SRHFAILGSTGSGKSNTVAVLLEELLEKKGATVLIFD 59


>gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
           ATPase, and DNA-binding domains [Transcription / Signal
           transduction mechanisms].
          Length = 560

 Score = 28.7 bits (64), Expect = 5.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 380 IAPSKKTALI-GESGVGKSTVAKLLYRLYDIKGG 412
           IA +  T LI GESG GK   A+ ++ L     G
Sbjct: 264 IAKTDSTVLILGESGTGKELFARAIHNLSPRANG 297


>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
           [Inorganic ion transport and metabolism].
          Length = 197

 Score = 28.7 bits (64), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIK 422
             G SG GKST+A  L   L+     +  +DG +++
Sbjct: 28  FTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63


>gnl|CDD|36182 KOG0964, KOG0964, KOG0964, Structural maintenance of chromosome
            protein 3 (sister chromatid cohesion complex Cohesin,
            subunit SMC3) [Cell cycle control, cell division,
            chromosome partitioning].
          Length = 1200

 Score = 28.4 bits (63), Expect = 5.7
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 493  KLSGGEKQRVSIAR--AILK-NP-PIIIFDEATSSLDIITERHIQTALATLSKNRTTLVI 548
            +LSGG+K  V++A   AI + +P P  +FDE  ++LD      +   +  LS +   +  
Sbjct: 1097 QLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITT 1156

Query: 549  AHRLSTITDADNI 561
              R   ++ AD  
Sbjct: 1157 TFRPELLSVADKF 1169


>gnl|CDD|28928 cd00268, DEADc, DEAD-box helicases. A diverse family of proteins
           involved in ATP-dependent RNA unwinding, needed in a
           variety of cellular processes including splicing,
           ribosome biogenesis and RNA degradation. The name
           derives from the sequence of the Walker  B motif (motif
           II). This domain contains the ATP- binding region..
          Length = 203

 Score = 28.5 bits (64), Expect = 5.8
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 476 IMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA 535
           I KL  G   VV   G  L   E+ ++      L     ++ DEA   LD+  E  I+  
Sbjct: 113 IRKLKRGPHIVVATPGRLLDLLERGKLD-----LSKVKYLVLDEADRMLDMGFEDQIREI 167

Query: 536 LATLSKNRTTLV 547
           L  L K+R TL+
Sbjct: 168 LKLLPKDRQTLL 179


>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
           modification, protein turnover, chaperones].
          Length = 494

 Score = 28.2 bits (62), Expect = 6.4
 Identities = 37/151 (24%), Positives = 50/151 (33%), Gaps = 23/151 (15%)

Query: 425 TKESLRQTIGIIPQDTILFNDTLRYN----ILYGNPNASDQELCAAV-EVAQLKSFIMKL 479
            KE L++ I    +   LF           +LYG P      L  AV   ++ +   +K 
Sbjct: 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG 309

Query: 480 PNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATS-------SLDIITERHI 532
                  VGE    +      R    +A    P II  DE  S       S D    R +
Sbjct: 310 SELLSKWVGESEKNI------RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVV 363

Query: 533 QTALATL---SKNRTTLVIA--HRLSTITDA 558
              L  L    K    LVIA  +R   +  A
Sbjct: 364 GQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394


>gnl|CDD|30586 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
          Length = 201

 Score = 28.3 bits (63), Expect = 6.9
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 15/81 (18%)

Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI---------KKITKESLRQTIGIIP 437
            L G  G GKSTVAK+L      + G   ID  D+         + + + + R  + I+ 
Sbjct: 6   GLTGGIGSGKSTVAKIL-----AELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILD 60

Query: 438 QDTILFNDTLRYNILYGNPNA 458
           +D  L    LR   ++ +P A
Sbjct: 61  EDGGLDRRKLR-EKVFNDPEA 80


>gnl|CDD|145898 pfam02990, EMP70, Endomembrane protein 70. 
          Length = 518

 Score = 28.0 bits (63), Expect = 7.2
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 136 LSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIYVSIMAVTVILYVWFT 195
           LS+ + +G++ + M+I  IV         FA        + G    S++   ++LY    
Sbjct: 261 LSALVGSGVQLLLMVIGTIV---------FACLGFLSPSNRG----SLLTAAIVLYALTG 307

Query: 196 IITSNWRVGLSKKMN 210
            +       L K   
Sbjct: 308 FVAGYVSARLYKTFK 322


>gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains.  The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 251

 Score = 27.9 bits (62), Expect = 7.4
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 494 LSGGEKQRV--SIARAIL--KNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIA 549
           LSGG++  V  S+  A+L  K  P+ I DE  ++LD+   ++I   + T  K    +V++
Sbjct: 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVS 226

Query: 550 HRLSTITDADNI 561
            +     +A+ +
Sbjct: 227 LKEGMFNNANVL 238


>gnl|CDD|30200 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
           the phosphorylation of adenosine 5'-phosphosulfate to
           form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
           end-product PAPS is a biologically "activated" sulfate
           form important for the assimilation of inorganic
           sulfate..
          Length = 149

 Score = 28.1 bits (63), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 388 LIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKK 423
           L G SG GKST+A+ L   L+     +  +DG +++ 
Sbjct: 4   LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40


>gnl|CDD|133282 cd01882, BMS1, Bms1.  Bms1 is an essential, evolutionarily
           conserved, nucleolar protein.  Its depletion interferes
           with processing of the 35S pre-rRNA at sites A0, A1, and
           A2, and the formation of 40S subunits.  Bms1, the
           putative endonuclease Rc11, and the essential U3 small
           nucleolar RNA form a stable subcomplex that is believed
           to control an early step in the formation of the 40S
           subumit.  The C-terminal domain of Bms1 contains a
           GTPase-activating protein (GAP) that functions
           intramolecularly.  It is believed that Rc11 activates
           Bms1 by acting as a guanine-nucleotide exchange factor
           (GEF) to promote GDP/GTP exchange, and that activated
           (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
          Length = 225

 Score = 28.0 bits (63), Expect = 7.7
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query: 387 ALIGESGVGKSTVAKLLYRLY------DIKGGIITIDGQDIKKIT 425
           A++G  GVGK+T+ K L + Y      DIKG I  + G+  +++T
Sbjct: 43  AVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKK-RRLT 86


>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
           implicated in the metabolism of DNA ends. They cleave
           ends sealed by hairpin structures and are thought to
           play a role in removing protein bound to DNA termini..
          Length = 213

 Score = 27.9 bits (62), Expect = 7.8
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 11/68 (16%)

Query: 494 LSGGEKQRVSIARAI--------LKNPPI--IIFDEATSSLDIITERHIQTALATL-SKN 542
           LSGGE    S++ A+             +  +  DE   +LD      + TAL  + ++N
Sbjct: 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN 183

Query: 543 RTTLVIAH 550
           R   VI+H
Sbjct: 184 RMVGVISH 191


>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
           (SMC) proteins are essential for successful chromosome
           transmission during replication and segregation of the
           genome in all organisms.  SMCs are generally present as
           single proteins in bacteria, and as at least six
           distinct proteins in eukaryotes.  The proteins range in
           size from approximately 110 to 170 kDa, and each has
           five distinct domains: amino- and carboxy-terminal
           globular domains, which contain sequences characteristic
           of ATPases, two coiled-coil regions separating the
           terminal domains , and a central flexible hinge.  SMC
           proteins function together with other proteins in a
           range of chromosomal transactions, including chromosome
           condensation, sister-chromatid cohesion, recombination,
           DNA repair, and epigenetic silencing of gene
           expression..
          Length = 178

 Score = 27.9 bits (62), Expect = 9.2
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 494 LSGGEKQRVSIARAI----LKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTT-LVI 548
           LSGGEK   ++A       +K  P  + DE  ++LD    R +   +  ++K+ +  +VI
Sbjct: 95  LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154

Query: 549 AHRLSTITDADNII 562
             +     +AD +I
Sbjct: 155 TLKKEMFENADKLI 168


>gnl|CDD|48369 cd02040, NifH, NifH gene encodes component II (iron protein) of
           nitrogenase. Nitrogenase is responsible for the
           biological nitrogen fixation, i.e. reduction of
           molecular nitrogen to ammonia. NifH consists of two
           oxygen-sensitive metallosulfur proteins: the
           mollybdenum-iron (alternatively, vanadium-iron or
           iron-iron) protein (commonly referred to as component
           1), and the iron protein (commonly referred to as
           component 2). The iron protein is a homodimer, with an
           Fe4S4 cluster bound between the subunits and two
           ATP-binding domains. It supplies energy by ATP
           hydrolysis, and transfers electrons from reduced
           ferredoxin or flavodoxin to component 1 for the
           reduction of molecular nitrogen to ammonia..
          Length = 270

 Score = 27.9 bits (62), Expect = 9.5
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 384 KKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILF 443
           ++ A+ G+ G+GKST  + L       G  + I G D K    +S R  +G     T+L 
Sbjct: 2   RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK---ADSTRLLLGGKAIPTVL- 57

Query: 444 NDTLR 448
            DTLR
Sbjct: 58  -DTLR 61


>gnl|CDD|38232 KOG3022, KOG3022, KOG3022, Predicted ATPase, nucleotide-binding
           [Cell cycle control, cell division, chromosome
           partitioning].
          Length = 300

 Score = 27.6 bits (61), Expect = 9.7
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 390 GESGVGKSTVAKLLYRL---YDIKGGIITID 417
           G+ GVGKSTV   L         K G++  D
Sbjct: 55  GKGGVGKSTVTVNLALALASEGKKVGLLDAD 85


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,978,354
Number of extensions: 379179
Number of successful extensions: 1883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 306
Length of query: 597
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 498
Effective length of database: 4,124,446
Effective search space: 2053974108
Effective search space used: 2053974108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.9 bits)