BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780576|ref|YP_003064989.1| ABC transporter related
protein [Candidatus Liberibacter asiaticus str. psy62]
(597 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 1215 bits (3143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/597 (100%), Positives = 597/597 (100%)
Query: 1 MAFARFPSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLI 60
MAFARFPSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLI
Sbjct: 1 MAFARFPSLRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLI 60
Query: 61 EQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHV 120
EQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHV
Sbjct: 61 EQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIRDFLYVEIGQGATCTLYHQVVSHV 120
Query: 121 YKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIY 180
YKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIY
Sbjct: 121 YKLSQRFHINYKVGKLSSAISNGIRSIEMIIRIIVVHLIPTILEFAISMAFLWYSYGDIY 180
Query: 181 VSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEI 240
VSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEI
Sbjct: 181 VSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEI 240
Query: 241 NRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFI 300
NRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFI
Sbjct: 241 NRLEKYISKYKESAISVATSLGWLNFGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFI 300
Query: 301 NTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFN 360
NTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFN
Sbjct: 301 NTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILNEKIEIQNAVNSKDLKIKNGHIVFN 360
Query: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD
Sbjct: 361 NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQD 420
Query: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480
IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP
Sbjct: 421 IKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480
Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS
Sbjct: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
Query: 541 KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCESIK 597
KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCESIK
Sbjct: 541 KNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQCESIK 597
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 235 bits (600), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 171/264 (64%), Gaps = 2/264 (0%)
Query: 331 LLNILNEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIG 390
+ ++L+ I I+ + ++ +L + G VF +V FSY + + GI+ K TAL+G
Sbjct: 327 MFSLLDHPIMIEESPHAVNLPVGKGTTVFRDVFFSYKQGHPVLSGINLCFKSGKMTALVG 386
Query: 391 ESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYN 450
SG GKST+ LL R+YD G I IDG +I+ IT SLR+ I + QD LF++T+RYN
Sbjct: 387 PSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYN 446
Query: 451 ILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILK 510
IL G P A+++E+ + A FIM LP GYDT VGE G LSGG+KQR++IARA+L+
Sbjct: 447 ILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR 506
Query: 511 NPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDADNIIVFDQGTVV 570
+ I++ DEATS+LD TE ++ AL+ L + RTT+VIAHR+STI +AD+II + G V
Sbjct: 507 DGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVS 566
Query: 571 ESGSHENLISQ--GGIYTSMWKKQ 592
ESG + L+ Q G +Y M+ Q
Sbjct: 567 ESGDQKYLLQQKDGSLYKKMYASQ 590
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 195 bits (496), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/508 (28%), Positives = 248/508 (48%), Gaps = 37/508 (7%)
Query: 97 RDFLYVEIGQGATCTLYHQVVSHVYKLSQRFHINYKVGKLSSAISNGIRSIEMIIRI-IV 155
R + +G+ + V++ + KLS F + G++ S + I+ II I +
Sbjct: 31 RYYCATMLGERMILFMQRDVIAKIIKLSPSFFNSRGHGEIFSILVKDTERIKAIIGIGMS 90
Query: 156 VHLIPTILEF-AISMAFLWYSYGDIYVSIMAVTVILYVWFTIITSNWRVGLSKKMNNLLH 214
+ L ++ F A+ M F+ I +S++ V+++ +I S+K N L+
Sbjct: 91 IVLRSLLMGFGAMCMMFVI----SIKLSLIVVSIVTLFLMVMIK------FSRKKTNTLY 140
Query: 215 ECHAKVF----DTLINFETIQYFNSEK-----FEINRLEKYISKYKESAISVATSLGWLN 265
K+ D + + +Q FN+ K ++I + Y + + I + +
Sbjct: 141 ADEKKLLNIFSDMIKSVMVLQSFNAGKEAIRLYDIQSQKTYKGFLRSALIRTCIACFVIF 200
Query: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDF----VFINTLLTQLAIPLNILGTIYRDS 321
F S G+ I +I +H V E G V+ + L +G I
Sbjct: 201 F-----VSCGIFIVFLIGAHYVATAEMPRGKLAEFVVYAFIFFASIRSCLGFIGGI---- 251
Query: 322 RQSFIEIEELLNILNEKIEIQNAVNSKDLKIKN-GHIVFNNVSFSY--NHHNCIFKGISF 378
Q+ + L ++ K++I + ++S+ G + F +VSF Y I K ++F
Sbjct: 252 SQAIASLRRLRELIVCKLDISSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNF 311
Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQ 438
+ P + AL+G+SG GK+++ L+ R YD G + I+G D++ ++ E +R+ I +PQ
Sbjct: 312 TVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRRFIAWVPQ 371
Query: 439 DTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGE 498
I+ ++ NI G P+A+ +E+ A +AQ FI L NGYDT++G+ + LS G+
Sbjct: 372 HPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQ 431
Query: 499 KQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAHRLSTITDA 558
QR++IARAILK+ PI++ DE S+LDI E+ I L + RTT+ +HRLS I DA
Sbjct: 432 IQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDA 491
Query: 559 DNIIVFDQGTVVESGSHENLISQGGIYT 586
D + V +VE G HE L+ + G Y
Sbjct: 492 DMVFVLHDQVIVEKGVHEELLKKSGFYA 519
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 80.5 bits (197), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 24/240 (10%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYD-----IKG 411
++ N VS Y +F I+ +I + TALIG SG GKST + L R+ + +
Sbjct: 7 MISNKVSVCYGEKRALFD-INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFT 65
Query: 412 GIITIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILYG--------NPNASDQ 461
G I +DG++I + + + LR +G++ Q F ++ N+ YG N DQ
Sbjct: 66 GEIILDGKNIYQSSVDVVRLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQ 125
Query: 462 ELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
+ +++ A L + + D + + L LSGG++QRV IARA+ NP +I+ DE
Sbjct: 126 IVEMSLKKASLFNEV------KDRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPC 178
Query: 522 SSLDIITERHIQTALATLSKNRTTLVIAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
S+LD I ++ + L ++ T +++ H + + +F G +VE + + +
Sbjct: 179 SALDPIATASVEELIHELRESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT 238
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 66.6 bits (161), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 15/210 (7%)
Query: 377 SFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGII 436
F++ +++ ++G SG GKST+ L+ G I ++GQ+ + + ++ + I+
Sbjct: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPS--KRPLSIL 76
Query: 437 PQDTILFND-TLRYNILYG-NPNAS-DQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLK 493
Q+ LF+ T+ NI G PN D A V+ K F+ N + + +
Sbjct: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPS-------Q 129
Query: 494 LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNR--TTLVIAHR 551
+SGG++QRV++AR +++ PI++ DE + D I L + R T L+I+H
Sbjct: 130 MSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHN 189
Query: 552 L-STITDADNIIVFDQGTVVESGSHENLIS 580
L ++ A IV G +V G + L++
Sbjct: 190 LEDSMQIATRFIVIAGGQIVYDGDPDRLMN 219
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 28/244 (11%)
Query: 355 GHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGII 414
G + ++S +Y + C + ++ I + TALIG +G GKST+ + + L + G I
Sbjct: 10 GGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69
Query: 415 TIDGQDIKKITKESLRQTIGIIPQD-------TILFNDTL---RYNILYGNPNASDQE-- 462
+I Q ++ K L I IPQ IL D + RY + AS+ +
Sbjct: 70 SIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
Query: 463 -LCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
+ A+E + S + +GE LS G+++RV +ARA+ + +II DE
Sbjct: 127 IVTEALENVGMSSMRQRQ-------IGE----LSIGQQKRVFLARALAQKSQVIIMDEPF 175
Query: 522 SSLDIITERHIQTALAT-LSKNRTTLVIAHRLSTITDADNIIVFDQGTVVESGSHENLIS 580
+++D TER + L + L+++ LV H +++I + +F + TV+ SG ++ +
Sbjct: 176 AAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFN 235
Query: 581 QGGI 584
+ I
Sbjct: 236 EDNI 239
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 145/361 (40%), Gaps = 47/361 (13%)
Query: 230 IQYFNSEKFEINRLEKYISKYKESAISVATSL------------GWLNFGQGLIFSIGMV 277
+ Y+N ++ + I+K ISV +L WL Q L S G +
Sbjct: 211 LTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILGIGAWLVIHQKL--SAGAI 268
Query: 278 I-TMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILN 336
I T II++ A+ EQ + +N L L +N LN
Sbjct: 269 IATSIITARAMAPLEQIINSKKSLNVGLKSLKYLIN----------------------LN 306
Query: 337 EKIEIQNAVNSK----DLKIKNGHIVFNNVSF-SYNHHNCIFKGISFEIAPSKKTALIGE 391
+ + N+ +SK +++ N I N+ F I + +SF I + G
Sbjct: 307 DFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGP 366
Query: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451
SG GKS + L ++ G I+ + I + E IG + Q LF ++ NI
Sbjct: 367 SGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426
Query: 452 LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN 511
+ + S ++ I+ L NGY T + + +K R+S R I N
Sbjct: 427 ILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANN 484
Query: 512 PPIIIFDEATSSLDIITERHIQTALATLSKNRTTLV-IAHRLSTITDADNIIVFD--QGT 568
P I++ DE LD + + T L +N+ T+V I+H + I+ +D ++F QG+
Sbjct: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGS 544
Query: 569 V 569
+
Sbjct: 545 L 545
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 60.8 bits (146), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 34/246 (13%)
Query: 336 NEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVG 395
N +EIQ+ S LK +G+++ + ++F ++ + L+G SG G
Sbjct: 9 NRLLEIQDICQSFSLKKISGNLL-------------VLDKVNFNVSSGEIVGLLGRSGSG 55
Query: 396 KSTVAKLLYRLYDIKGGIITIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILY 453
KST+ +++ L G + G+ IK K+ + QT + P T+L N L
Sbjct: 56 KSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKG 115
Query: 454 GNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPP 513
+ + +A+++ L +G+++ ++SGG QRV ARA + P
Sbjct: 116 IDKEERRKRALSAIDLIGL--------DGFESA---HTTEISGGMLQRVGFARAFVVFPS 164
Query: 514 IIIFDEATSSLDIITERHIQTALATL-SKNR----TTLVIAHRL-STITDADNIIVF--D 565
+++ DE S+LD++T +++T L L + R + L++ H + + D ++VF +
Sbjct: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
Query: 566 QGTVVE 571
G + E
Sbjct: 225 PGRIAE 230
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 33/219 (15%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITK-ESLR 430
+ KG+ + P + L+G +G GK+T ++ L G I IDG DI K+ R
Sbjct: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
Query: 431 QTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
I +PQ+ +F T+ NIL A +EV + K D+++ E
Sbjct: 100 LGISYLPQEASIFRGLTVEENIL------------AVLEVYEKDK--KKRHEKLDSLLKE 145
Query: 490 RGLK---------LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
+ LSGG+++R+ IAR+++ P I+ DE + +D + I + L+
Sbjct: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
Query: 541 KNRTTLVIA----HRLSTITDADNII----VFDQGTVVE 571
++I H + T+ D II V GTV E
Sbjct: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 17/218 (7%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDIKGGIITIDGQDIKKITKESL 429
I +G++ ++ PS+ A++G +G GKST++ LL ++ Y+I G I G+ I +
Sbjct: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE- 76
Query: 430 RQTIGI---------IPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480
R + GI IP I+ L+ + +++EL +++ +L
Sbjct: 77 RASKGIFLAFQYPVEIP--GIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
Query: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER-HIQTALATL 539
D + L SGGEK+ I + L P + I DE S LDI + Q A
Sbjct: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194
Query: 540 SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESGSH 575
S++R+ L+I H RL D I V G ++++G +
Sbjct: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDY 232
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 57.8 bits (138), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 39/228 (17%)
Query: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG----QDIKKITKES 428
+ I+ + ++ + G SG GKST+ + + + + G I I+G DI+ I
Sbjct: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI--HE 90
Query: 429 LRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVG 488
+R+ +G++ Q LF+ N S E C + ++ K+P +
Sbjct: 91 VRRDVGMVFQHFNLFS------------NLSVLENCTLGPI-----WVRKMPKKDAEELA 133
Query: 489 ERGL-KLSGGEK-------------QRVSIARAILKNPPIIIFDEATSSLDIITERHIQT 534
L K+ +K QR +IAR++ P I++FDE TS+LD + +
Sbjct: 134 MHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLD 193
Query: 535 ALATLSKNRTTLV-IAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
+ L++ T+V + H + AD ++ DQG +VE S E +
Sbjct: 194 IMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 57.4 bits (137), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 48/224 (21%)
Query: 357 IVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITI 416
I +N SF N + I + I+F I P++ LIG +G GKST+AKL+ + IK I ++
Sbjct: 11 ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSV 67
Query: 417 DGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI 476
K + +G +PQ + N + ++ ++
Sbjct: 68 ---------KRHPQLIVGYVPQKVTIEN---------------------TLPLSLMRFMT 97
Query: 477 MKLPNGYDTV---------VGE--RGLK-LSGGEKQRVSIARAILKNPPIIIFDEATSSL 524
+ +P+ D V +G+ R +K LSGGE QR +A+A+L+ P +++ DE +
Sbjct: 98 LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
Query: 525 DIITERHIQTALATLSKNRTT--LVIAHRLSTI-TDADNIIVFD 565
D E + + ++ ++ L+I+H L + D +I +
Sbjct: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 55.1 bits (131), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 15/225 (6%)
Query: 357 IVFNNVSFSYNHHNCIF---KGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGI 413
++ NV SY F + + + + AL+ SG GKST+ + L G
Sbjct: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
Query: 414 ITIDGQDIKKITKES---LRQT-IGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVE 468
+ I Q K++ + LR + IG + Q+ L D ++ NI++ A A
Sbjct: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
L S++ R +SGGE+QRV+I RAI P II+ DE T +LD+ T
Sbjct: 127 AMDLLSYM-----DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
Query: 529 ERHIQTALATL--SKNRTTLVIAHRLSTITDADNIIVFDQGTVVE 571
+ + + L L L+ H + D I G + +
Sbjct: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 50.8 bits (120), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 494 LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSK--NRTTLVIAHR 551
LSGG KQRV ARA PI++ DE SSLD + +Q L L + +T + ++H
Sbjct: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229
Query: 552 LSTITDADN-IIVFDQGTVVESGSHENLI 579
++ N I + + G +++ G+ + +I
Sbjct: 230 INEAFRLGNRIAIMEGGRIIQCGTPQEII 258
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 14/203 (6%)
Query: 387 ALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDI---KKITKESLRQTIGIIPQDTILF 443
+IG SG GKS + + + L G + + G+ + K + +G++ Q LF
Sbjct: 43 GVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALF 102
Query: 444 ND-TLRYNILYGNPNASDQELCAAV--EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQ 500
+ T++ NI P L A + + K I+ LP ++ +LSGG +
Sbjct: 103 SSMTVQENISM--PIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIK 157
Query: 501 RVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATL--SKNRTTLVIAHRLST-ITD 557
RVS+ARA+ +P ++ DE TS LD I L L S + +I H L+ I+
Sbjct: 158 RVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLIST 217
Query: 558 ADNIIVFDQGTVVESGSHENLIS 580
+ + V + +++ G+ +++
Sbjct: 218 CNRVAVIQKKGIMKEGTISDIVD 240
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 43.5 bits (101), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)
Query: 355 GHIVFN--NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412
GH+V +S SYN + +SF++ P +IG +G GK+T+ ++L G
Sbjct: 314 GHVVIEAKGISKSYNDR-LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372
Query: 413 IITIDGQDIK----KITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVE 468
I + G+ + +++SL + + +D +D ++ N N A C+A
Sbjct: 373 TIHV-GETVCLSYVDQSRDSL-EAEKTVWEDISGGDDIVKLNGHEINSRA----YCSA-- 424
Query: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528
F K G D +R LSGG++ RV +A+ + +I+ DE T+ LD T
Sbjct: 425 ------FNFK---GGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
Query: 529 ERHIQTALATLSKNRTTLVIAH-RLSTITDADNIIVFDQGTVVE 571
++ AL + ++I+H R+ A +I+ F+ VE
Sbjct: 474 LSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVE 515
Score = 30.8 bits (68), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 36/182 (19%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLY---RLYDIKG--------GIITIDGQ- 419
+ I+ P K ++G +G GKST+ +++ + Y+ + G + + Q
Sbjct: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80
Query: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI--- 476
D+ K KE++ + G+ + IL RYN L N + +E E+A+L+ I
Sbjct: 81 DLSKTVKENIIE--GVAHKQAILD----RYNELMMNYSEKTEE-----EIAKLQDIIDSK 129
Query: 477 ----------MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526
+ + + + G LSGGEK+RV++ + +L +P +++ DE T+ LD
Sbjct: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189
Query: 527 IT 528
T
Sbjct: 190 ET 191
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 41.2 bits (95), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+ K S I + ++G +G GK+T+ KLL G IT+ G ++K T + R+
Sbjct: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKRE 357
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQ-LKSFIMKLPNGYDTVVGER 490
I P ++ + L G+ S + VA +K F+ P+ +++
Sbjct: 358 DID--PDKSLA-------SYLTGSSGDSLMVRGESRHVAGYIKDFLFH-PDQAHSLMKH- 406
Query: 491 GLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLSKNRTTLVIAH 550
LSGGEK R +AR + + +I DE T+ LD T ++ + L T L+++H
Sbjct: 407 ---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIVSH 461
Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 52/245 (21%)
Query: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQ 431
+ + + I P ++ L+G +G GKST+ K+ + + + G
Sbjct: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG------------------- 60
Query: 432 TIGIIPQDTILFNDTLRYNILYGNPNAS---------DQELCAAVEVAQLKSFIMKLPNG 482
+ + + R L NP+ S D + +E ++K
Sbjct: 61 --------NVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLK---K 109
Query: 483 YDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT----ERH---IQTA 535
++ +R LS G+ + V++ + ++ P I+I DE T+ LD T E+ I +A
Sbjct: 110 FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA 169
Query: 536 LATLSKNRTTLVIAHRLSTIT---DADNIIVFDQGTVVESGSHENLISQGGIYTSMWKKQ 592
L +S +R L LST T D + DQG +N++ Q I KK+
Sbjct: 170 LIFVSHDRRFL---ETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKK 226
Query: 593 CESIK 597
E+ K
Sbjct: 227 NEAEK 231
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 37.0 bits (84), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 487 VGERGLKLSGGEKQRVSIARAILKNP---PIIIFDEATSSLDIITERHIQTALATL-SKN 542
+G+ LSGGE QRV +A+ + K + I DE T+ L + L TL +
Sbjct: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
Query: 543 RTTLVIAHRLSTITDADNIIVF------DQGTVVESGSHENLISQGGIYTSMWKK 591
+ +VI H L I AD I+ F G ++ SG E + + YT + K
Sbjct: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLK 953
>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
psy62]
Length = 554
Score = 29.3 bits (64), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 21/150 (14%)
Query: 430 RQTIGIIPQD----TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDT 485
RQ + QD F L N++ P + +C V + K I P+G D
Sbjct: 351 RQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDIS--PDGIDR 408
Query: 486 V----VGERG------LKL-SGGEKQRVSIARAIL----KNPPIIIFDEATSSLDIITER 530
V RG +KL SGGE R +A I+ + P ++FDE S +
Sbjct: 409 VEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVAD 468
Query: 531 HIQTALATLSKNRTTLVIAHRLSTITDADN 560
I L LSK L + H AD
Sbjct: 469 AIGYRLKQLSKKIQLLAVTHAPQVAARADR 498
>gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str.
psy62]
Length = 587
Score = 28.5 bits (62), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 9 LRTLKKLW----PYMWPANRWDLKVRIIGAMFSVIASKFVILG-----IPFLLKWVTESL 59
L +K W P+ P W++ + + G F V+AS+ +++G +P + ++ ++
Sbjct: 174 LSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVVGDTVIPLPGIGSYIALAI 233
Query: 60 IEQSTASKTTSYLTIGIVILITSYGTMRVVNLISNHIR 97
EQ + + LT+ VI + R + + SN R
Sbjct: 234 KEQDLLAILYAMLTMLGVIFLYDQLLFRPMIVWSNKFR 271
>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 492
Score = 27.7 bits (60), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 90 NLISNHIRDFLYVEIGQG-ATCTLYHQVVSHVYKLSQRFHINYKVGK 135
NL++ H R L IG ++ H + ++K SQ F I++ +GK
Sbjct: 139 NLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGK 185
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 26.9 bits (58), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 375 GISFEIAPSKKTALIGESGVGKSTVAKLLYR-LYDIKGGIITIDGQDIKKITKESLRQTI 433
G+ P +G +GVGK+ + K L R L+D + +I ID + + K S+ + I
Sbjct: 590 GLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY--MEKHSVSRLI 647
Query: 434 GIIP 437
G P
Sbjct: 648 GSPP 651
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 26.6 bits (57), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 379 EIAPSKKTALIGESGVGKSTVAKLLYRL 406
E+ P K L+G +GVGK+ +++ L RL
Sbjct: 50 ELMP-KNILLVGPTGVGKTAISRRLARL 76
>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 186
Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 388 LIGESGVGKSTVAK 401
LIG SGVGK+T+AK
Sbjct: 7 LIGASGVGKTTIAK 20
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 187 TVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKY 246
+L WF N+R K+++ +L + H K I+ + +Q ++E N+ EKY
Sbjct: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ----AEYEKNK-EKY 264
Query: 247 IS 248
S
Sbjct: 265 FS 266
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 25.4 bits (54), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 92 ISNHIRDFLYVEIGQGATCTLYHQVVSHVY 121
I NH ++ Y E +G++ YH +H+Y
Sbjct: 268 IKNHQKE--YDESEKGSSKARYHAAYAHIY 295
>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 25.0 bits (53), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 33/187 (17%)
Query: 274 IGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLN 333
IG + +I SH V G+ +GDF + P+ +LG + +F+ E L+
Sbjct: 40 IGAGVELI--SHCVVAGKTKIGDFTKV--------FPMAVLGGDTQSKYHNFVGTELLVG 89
Query: 334 ILNEKIEIQNAV--NSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGE 391
+K I+ V N ++ IV +N F N H +A K +G
Sbjct: 90 ---KKCVIREGVTINRGTVEYGGKTIVGDNNFFLANSH----------VAHDCK---LGN 133
Query: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451
V + V + + D + ++ G + + T+ IG + T + +D + Y I
Sbjct: 134 GIVLSNNVMIAGHVIVDDR--VVFGGGSAVHQFTRIGKYAFIGGM---TGVVHDVIPYGI 188
Query: 452 LYGNPNA 458
L GNP A
Sbjct: 189 LNGNPGA 195
>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 185
Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 388 LIGESGVGKSTVAK 401
LIG SGVG++T+AK
Sbjct: 7 LIGASGVGETTIAK 20
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 25.0 bits (53), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 388 LIGESGVGKSTVAKLLYRLYDI 409
L+G +G GK+ +A+ L R+ D+
Sbjct: 118 LVGPTGCGKTYLAQTLARIIDV 139
>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 963
Score = 25.0 bits (53), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 425 TKESLRQTIGIIPQDTILFNDTL 447
TK SL +G IP DT+ FN +L
Sbjct: 865 TKCSLLSYLGYIPFDTVKFNGSL 887
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 24.6 bits (52), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 382 PSKKTALIGESGVGKSTVAKL 402
PS+ L+G SG GKS +A +
Sbjct: 63 PSRVVILVGPSGSGKSCLANI 83
>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 288
Score = 24.6 bits (52), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTI 317
F + +++ +V +ISSHA+ +G F F+ + + AI + G I
Sbjct: 168 FTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKI 219
>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 23.9 bits (50), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 9 LRTLKKLWPYMWPANRWDLKVRIIGAMFSVIASKFVILGIPFLLKWVTESLIEQSTASKT 68
L+ KK W + WD+++R IG++ S S+ V L +IE + KT
Sbjct: 58 LQEAKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLF----------DVIETVSREKT 105
Query: 69 TSYLTIGIV---------ILITSYGTMRVVNLISNHIRDFL 100
S L++ ++ I + + ++ ++ N +DF+
Sbjct: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
>gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 400
Score = 23.9 bits (50), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 484 DTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA--LATLSK 541
D+++ + G K KQ ++ AR ++ N P+ +F+ ++ ++ A +A L+K
Sbjct: 291 DSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFE-----IEPFDRATVEVAHYVAKLTK 345
Query: 542 NRTTLVIAHRLSTIT 556
R + IA TIT
Sbjct: 346 ERRIISIAGGGDTIT 360
>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 652
Score = 23.9 bits (50), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 365 SYNHHNCIFKGISFEIAPSKKTALIGESG-VGKSTVAKLLYRLYDIKGGIITIDGQDIKK 423
SYNH + I K I A K+ +IG G G ST L Y L I G I +D ++
Sbjct: 558 SYNHQDAIAKNIKAGTA-VKQGQIIGWIGTTGLSTGPHLHYEL--IVNG-IKVDSTKVRI 613
Query: 424 ITKESLR 430
+E+L+
Sbjct: 614 PERENLK 620
>gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 216
Score = 23.5 bits (49), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 490 RGLKLSGGEKQRVSIARAILKNPPIII 516
+ LS ++R+S++++++KNP I I
Sbjct: 63 KNYNLSSSLEKRISLSQSLIKNPRIRI 89
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,920
Number of Sequences: 1233
Number of extensions: 15441
Number of successful extensions: 120
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 53
length of query: 597
length of database: 328,796
effective HSP length: 79
effective length of query: 518
effective length of database: 231,389
effective search space: 119859502
effective search space used: 119859502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 41 (20.4 bits)