HHsearch alignment of GI: 254780577 and MMDB domain: 2auk_A_83-190
>2auk_A (A:83-190) DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=92.33 E-value=0.072 Score=31.92 Aligned_cols=102 Identities=15% Similarity=0.065 Sum_probs=58.1
Q ss_pred EEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEEEC
Q ss_conf 89753154510131465556501012001570689999708982999985157655036513899857038668888328
Q gi|254780577|r 110 NRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRFG 189 (232)
Q Consensus 110 ~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~irfG 189 (232)
+-+=.+|+|...-..+|.......++..-.-++..+..+... .-+.-+-.+|...-..|..++.. .-|
T Consensus 6 IIsE~~G~v~f~DiieGvT~~e~~De~TG~~~~vVie~k~~~------~~~~~l~P~I~I~d~~G~~~~~~------~~~ 73 (108)
T 2auk_A 6 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT------AGGKDLRPALKIVDAQGNDVLIP------GTD 73 (108)
T ss_dssp EECSSCEEEEEESCCBTTTEEEEECTTTCCEEEEECCTTTSC------STTTTCCCEEEEECTTSCBCBCT------TSS
T ss_pred EEEECCCEEEEEEEEECEEEEEEEECCCCCEEEEEECCCCCC------CCCCCCCCEEEEECCCCCEEEEC------CCC
T ss_conf 887216658999974031588987247891689985153455------55556684699985789727715------999
Q ss_pred CEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCC
Q ss_conf 98999963997367622988993077879717877
Q gi|254780577|r 190 SRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTK 224 (232)
Q Consensus 190 S~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232)
.....+||.++.+.|+.||+|++|. +||+++...
T Consensus 74 ~~a~Y~LP~ga~l~V~dG~~V~~Gd-vlAkiPres 107 (108)
T 2auk_A 74 MPAQYFLPGKAIVQLEDGVQISSGD-TLARIPQES 107 (108)
T ss_dssp CBCEEECCTTCEESSCTTCEECTTC-EEEEEECCC
T ss_pred CCEEEECCCCEEEEECCCCEECCCC-EEEECCCCC
T ss_conf 6189977999699983989983888-999885235