HHsearch results for GI: 254780577 and protein with PDBid: 2auk_A

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=94.91  E-value=0.042  Score=32.47  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=29.8

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCC
Q ss_conf             898999963997367622988993077879717877
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTK  224 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~  224 (232)
                      +......||.++.+.|+.||+|.+|+ +||+++...
T Consensus       155 ~~~~~Y~lP~ga~l~V~dG~~V~~Gd-vlAkiPres  189 (190)
T 2auk_A          155 DMPAQYFLPGKAIVQLEDGVQISSGD-TLARIPQES  189 (190)
T ss_dssp             SCBCEEECCTTCEESSCTTCEECTTC-EEEEEECCC
T ss_pred             CCCEEEECCCCEEEEECCCCEECCCC-EEEECCCCC
T ss_conf             97579977999799993979986888-999885345